pycom10g17790

Peroxisomal 2,4-dienoyl-CoA

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
20961514 .. 20964430
2917 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g17790.4

Sequence Viewer

Length: 894 bp
ATGGAGTCGCCGTTCAAGGCTGATGCGGTGAAAGGGAAGGTGGCTCTGATAACCGGAGGTGGGTCAGGAATCGGGTTGGAAATGTCGACCCAATTCGGCAAACATGGCGCCTCCATTGCCATCATGGGCCGCCGGAAGCAAGTGCTTGACTCAGCCGTCTCCGAGCTTCGATCTCTTGGAATTCAGGCTGTTGGTTTTGAGGGAGATGTTCGTAAACAGGAAGATGCAAAAAGAGTGGTGGAATCAACTTTCCAGCATTTTGGTAGGCTTGACGTACTTGTGAATGCTGCAGCTGGCAATTTTCTTGTATCAGCAGAGGATCTATCACCTAATGGATTTCGAACAGTTATGGATATTGATGCTGTTGGTACATTCACAATGTGCCACGAAGCACTCAAGTATCTTAAAAAAGGAGGGCCCGGAAGGGGCTCATCTGGTGGTGGAACAATATTGAACATCAGTGTTACTTTACATTATACAGCCGCTTGGTATCAAGTCCATGTATCAGCAGCCAAGGCAGCTGTTGATGCCACTATGAGAAACTTGGCACTCGAGTGGGGAACTGACTACGACATTAGGGTCAATGGAATAGCACCGGGTCCCATTGGTGATACACCTGGCATGAGTAAACTTGCACCTGCGGAGATAAATAGCAAAGCTAGAGATTACATGCCTTTGTATAAACTAGGGGACAAATGGGATATTGCTATGGCCGCTCTCTACCTTACTTCGGATGCAGGTAAATTCATCAATGGAACTGTCATTGTAGTTGATGGGGGACTTTGGCTGAGCCGGCCTCGCCATCTGCCAAAAGAAGCAGTGAAGCAGCTTTCTCGAACAGTAGAGAACAGATCTAGAAATGCACCAGTAGGGGTTCCAAACAGCAAGTTGTAA

Protein Analysis

298

Amino Acids

31.66

Weight (kDa)

9.3

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 646
AasI GACNNNNNNGTC 2 cut(s) 155, 578
Acc36I ACCTGC 2 cut(s) 646, 728
AccB1I GGYRCC 1 cut(s) 107
AccBSI CCGCTC 1 cut(s) 716
AccI GTMKAC 1 cut(s) 86
AciI CCGC 5 cut(s) 26, 130, 483, 641, 714
AclWI GGATC 1 cut(s) 327
AcoI YGGCCR 1 cut(s) 711
AcsI RAATTY 2 cut(s) 180, 743
AcyI GRCGYC 1 cut(s) 108
AdeI CACNNNGTG 1 cut(s) 381
AfaI GTAC 2 cut(s) 276, 370
AfiI CCNNNNNNNGG 3 cut(s) 60, 425, 730
AgsI TTSAA 2 cut(s) 16, 454
AjnI CCWGG 1 cut(s) 616
AleI CACNNNNGTG 1 cut(s) 553
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 5 cut(s) 166, 293, 521, 659, 829
AluI AGCT 5 cut(s) 166, 293, 521, 659, 829
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 1 cut(s) 327
Ama87I CYCGRG 1 cut(s) 551
AoxI GGCC 4 cut(s) 127, 416, 711, 794
ApaI GGGCCC 1 cut(s) 420
ApeKI GCWGC 5 cut(s) 287, 290, 509, 518, 826
ApoI RAATTY 2 cut(s) 180, 743
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 4 cut(s) 127, 416, 417, 599
AsuC2I CCSGG 2 cut(s) 420, 597
AsuHPI GGTGA 3 cut(s) 40, 318, 620
AsuII TTCGAA 1 cut(s) 340
AvaI CYCGRG 1 cut(s) 551
AvaII GGWCC 1 cut(s) 599
BaeGI GKGCMC 1 cut(s) 420
BaeI ACNNNNGTAYC 2 cut(s) 383, 416
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 2 cut(s) 420, 431
BbvI GCAGC 5 cut(s) 274, 302, 521, 530, 838
BccI CCATC 3 cut(s) 128, 767, 810
BceAI ACGGC 1 cut(s) 140
BcgI CGANNNNNNTGC 2 cut(s) 815, 849
BciT130I CCWGG 1 cut(s) 618
BcnI CCSGG 2 cut(s) 420, 597
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 3 cut(s) 660, 686, 855
BfmI CTRYAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 2 cut(s) 646, 728
BglII AGATCT 1 cut(s) 851
BisI GCNGC 8 cut(s) 130, 288, 291, 483, 510, 519, 714, 827
BlpI GCTNAGC 1 cut(s) 788
BlsI GCNGC 8 cut(s) 131, 289, 292, 484, 511, 520, 715, 828
Bme1390I CCNGG 3 cut(s) 420, 597, 618
Bme18I GGWCC 1 cut(s) 599
BmeT110I CYCGRG 1 cut(s) 551
BmgT120I GGNCC 4 cut(s) 127, 416, 417, 599
BmiI GGNNCC 5 cut(s) 109, 418, 600, 601, 876
BmrFI CCNGG 3 cut(s) 420, 597, 618
BmsI GCATC 5 cut(s) 13, 214, 349, 517, 724
BplI GAGNNNNNCTC 2 cut(s) 781, 813
Bpu1102I GCTNAGC 1 cut(s) 788
Bpu14I TTCGAA 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 2 cut(s) 420, 597
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 513
BsaWI WCCGGW 1 cut(s) 53
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 425, 730
Bse118I RCCGGY 1 cut(s) 792
Bse1I ACTGG 1 cut(s) 866
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 618
BseDI CCNNGG 1 cut(s) 513
BseGI GGATG 1 cut(s) 739
BseLI CCNNNNNNNGG 3 cut(s) 60, 425, 730
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 165, 779
BseNI ACTGG 1 cut(s) 866
BseSI GKGCMC 1 cut(s) 420
BseXI GCAGC 5 cut(s) 274, 302, 521, 530, 838
BshFI GGCC 4 cut(s) 129, 418, 713, 796
BshNI GGYRCC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 551
BsiSI CCGG 5 cut(s) 54, 133, 420, 596, 793
BslFI GGGAC 3 cut(s) 585, 704, 792
BslI CCNNNNNNNGG 3 cut(s) 60, 425, 730
BsmAI GTCTC 1 cut(s) 163
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 3 cut(s) 585, 704, 792
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 4 cut(s) 129, 418, 713, 796
BsoBI CYCGRG 1 cut(s) 551
Bsp119I TTCGAA 1 cut(s) 340
Bsp120I GGGCCC 1 cut(s) 416
Bsp1286I GDGCHC 2 cut(s) 420, 431
Bsp143I GATC 3 cut(s) 170, 319, 851
Bsp1720I GCTNAGC 1 cut(s) 788
BspACI CCGC 5 cut(s) 26, 130, 483, 641, 714
BspANI GGCC 4 cut(s) 129, 418, 713, 796
BspCNI CTCAG 2 cut(s) 164, 780
BspLI GGNNCC 5 cut(s) 109, 418, 600, 601, 876
BspMAI CTGCAG 1 cut(s) 292
BspMI ACCTGC 2 cut(s) 646, 728
BspPI GGATC 1 cut(s) 327
BspT104I TTCGAA 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 716
BsrDI GCAATG 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 792
BsrI ACTGG 1 cut(s) 866
BssAI RCCGGY 1 cut(s) 792
BssECI CCNNGG 1 cut(s) 513
BssMI GATC 3 cut(s) 170, 319, 851
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 1 cut(s) 618
Bst4CI ACNGT 3 cut(s) 346, 760, 841
BstACI GRCGYC 1 cut(s) 108
BstBI TTCGAA 1 cut(s) 340
BstC8I GCNNGC 2 cut(s) 295, 794
BstDEI CTNAG 2 cut(s) 151, 788
BstF5I GGATG 1 cut(s) 739
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 3 cut(s) 173, 322, 854
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 3 cut(s) 170, 319, 851
BstMWI GCNNNNNNNGC 8 cut(s) 105, 116, 515, 518, 527, 713, 793, 798
BstNI CCWGG 1 cut(s) 618
BstNSI RCATGY 1 cut(s) 673
BstSCI CCNGG 3 cut(s) 418, 595, 616
BstSFI CTRYAG 1 cut(s) 288
BstSLI GKGCMC 1 cut(s) 420
BstV1I GCAGC 5 cut(s) 274, 302, 521, 530, 838
BstX2I RGATCY 2 cut(s) 319, 851
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 2 cut(s) 319, 851
BsuRI GGCC 4 cut(s) 129, 418, 713, 796
BtsCI GGATG 1 cut(s) 739
BtsI GCAGTG 1 cut(s) 825
BtsIMutI CAGTG 2 cut(s) 466, 825
BveI ACCTGC 2 cut(s) 646, 728
Cac8I GCNNGC 2 cut(s) 295, 794
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 792
Cfr13I GGNCC 4 cut(s) 127, 416, 417, 599
Csp6I GTAC 2 cut(s) 275, 369
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 5 cut(s) 104, 124, 500, 622, 670
CviQI GTAC 2 cut(s) 275, 369
DdeI CTNAG 2 cut(s) 151, 788
DinI GGCGCC 1 cut(s) 109
DpnI GATC 3 cut(s) 172, 321, 853
DpnII GATC 3 cut(s) 170, 319, 851
DraIII CACNNNGTG 1 cut(s) 381
DrdI GACNNNNNNGTC 2 cut(s) 155, 578
DseDI GACNNNNNNGTC 2 cut(s) 155, 578
EaeI YGGCCR 1 cut(s) 711
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 2 cut(s) 420, 431
Eco47I GGWCC 1 cut(s) 599
Eco88I CYCGRG 1 cut(s) 551
EcoO109I RGGNCCY 2 cut(s) 416, 599
EcoRI GAATTC 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 513
EcoT38I GRGCYC 2 cut(s) 420, 431
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 513
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 5 cut(s) 107, 127, 503, 625, 673
FaqI GGGAC 3 cut(s) 585, 704, 792
FatI CATG 5 cut(s) 103, 123, 499, 621, 669
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 8 cut(s) 130, 288, 291, 483, 510, 519, 714, 827
FokI GGATG 1 cut(s) 746
FriOI GRGCYC 2 cut(s) 420, 431
Fsp4HI GCNGC 8 cut(s) 130, 288, 291, 483, 510, 519, 714, 827
FspBI CTAG 3 cut(s) 660, 686, 855
GlaI GCGC 1 cut(s) 109
GluI GCNGC 8 cut(s) 130, 288, 291, 483, 510, 519, 714, 827
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 4 cut(s) 129, 418, 713, 796
HapII CCGG 5 cut(s) 54, 133, 420, 596, 793
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 5 cut(s) 107, 127, 503, 625, 673
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 4 cut(s) 5, 69, 149, 242
HpaII CCGG 5 cut(s) 54, 133, 420, 596, 793
HphI GGTGA 3 cut(s) 40, 318, 620
Hpy166II GTNNAC 3 cut(s) 87, 215, 629
Hpy188I TCNGA 3 cut(s) 48, 163, 733
Hpy188III TCNNGA 3 cut(s) 66, 834, 855
Hpy8I GTNNAC 3 cut(s) 87, 215, 629
HpyAV CCTTC 2 cut(s) 31, 417
HpyCH4III ACNGT 3 cut(s) 346, 760, 841
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 5 cut(s) 227, 290, 635, 737, 863
HpyF10VI GCNNNNNNNGC 8 cut(s) 105, 116, 515, 518, 527, 713, 793, 798
HpyF3I CTNAG 2 cut(s) 151, 788
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 5 cut(s) 107, 127, 503, 625, 673
HspAI GCGC 1 cut(s) 108
KasI GGCGCC 1 cut(s) 107
KflI GGGWCCC 1 cut(s) 599
KroI GCCGGC 1 cut(s) 792
KroNI GCCGGC 1 cut(s) 794
Kzo9I GATC 3 cut(s) 170, 319, 851
Lsp1109I GCAGC 5 cut(s) 274, 302, 521, 530, 838
LweI GCATC 5 cut(s) 13, 214, 349, 517, 724
MaeI CTAG 3 cut(s) 660, 686, 855
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 463
MalI GATC 3 cut(s) 172, 321, 853
MbiI CCGCTC 1 cut(s) 716
MboI GATC 3 cut(s) 170, 319, 851
MboII GAAGA 1 cut(s) 233
MflI RGATCY 2 cut(s) 319, 851
MhlI GDGCHC 2 cut(s) 420, 431
MluCI AATT 4 cut(s) 92, 180, 298, 743
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 2 cut(s) 14, 143
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 6 cut(s) 50, 121, 193, 310, 407, 807
MroNI GCCGGC 1 cut(s) 792
MseI TTAA 1 cut(s) 405
MslI CAYNNNNRTG 1 cut(s) 553
MspA1I CMGCKG 2 cut(s) 293, 521
MspI CCGG 5 cut(s) 54, 133, 420, 596, 793
MspR9I CCNGG 3 cut(s) 420, 597, 618
Mva1269I GAATGC 1 cut(s) 289
MvaI CCWGG 1 cut(s) 618
MwoI GCNNNNNNNGC 8 cut(s) 105, 116, 515, 518, 527, 713, 793, 798
NaeI GCCGGC 1 cut(s) 794
NarI GGCGCC 1 cut(s) 108
NciI CCSGG 2 cut(s) 420, 597
NdeII GATC 3 cut(s) 170, 319, 851
NgoMIV GCCGGC 1 cut(s) 792
NlaIII CATG 5 cut(s) 107, 127, 503, 625, 673
NlaIV GGNNCC 5 cut(s) 109, 418, 600, 601, 876
NspI RCATGY 1 cut(s) 673
NspV TTCGAA 1 cut(s) 340
OliI CACNNNNGTG 1 cut(s) 553
PaeR7I CTCGAG 1 cut(s) 551
PaqCI CACCTGC 1 cut(s) 646
PctI GAATGC 1 cut(s) 289
PdiI GCCGGC 1 cut(s) 794
PfeI GAWTC 2 cut(s) 69, 242
PkrI GCNGC 8 cut(s) 131, 289, 292, 484, 511, 520, 715, 828
PleI GAGTC 2 cut(s) 13, 143
PluTI GGCGCC 1 cut(s) 111
PpsI GAGTC 2 cut(s) 13, 143
PpuMI RGGWCCY 1 cut(s) 599
Psp5II RGGWCCY 1 cut(s) 599
Psp6I CCWGG 1 cut(s) 616
PspGI CCWGG 1 cut(s) 616
PspN4I GGNNCC 5 cut(s) 109, 418, 600, 601, 876
PspOMI GGGCCC 1 cut(s) 416
PspPI GGNCC 4 cut(s) 127, 416, 417, 599
PspPPI RGGWCCY 1 cut(s) 599
PspXI VCTCGAGB 1 cut(s) 551
PstI CTGCAG 1 cut(s) 292
PsuI RGATCY 2 cut(s) 319, 851
PvuII CAGCTG 2 cut(s) 293, 521
RsaI GTAC 2 cut(s) 276, 370
RsaNI GTAC 2 cut(s) 275, 369
RseI CAYNNNNRTG 1 cut(s) 553
SalI GTCGAC 1 cut(s) 85
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 8 cut(s) 130, 288, 291, 483, 510, 519, 714, 827
Sau3AI GATC 3 cut(s) 170, 319, 851
Sau96I GGNCC 4 cut(s) 127, 416, 417, 599
SchI GAGTC 2 cut(s) 14, 143
ScrFI CCNGG 3 cut(s) 420, 597, 618
SduI GDGCHC 2 cut(s) 420, 431
SfaNI GCATC 5 cut(s) 13, 214, 349, 517, 724
SfcI CTRYAG 1 cut(s) 288
SfoI GGCGCC 1 cut(s) 109
Sfr274I CTCGAG 1 cut(s) 551
SfuI TTCGAA 1 cut(s) 340
SinI GGWCC 1 cut(s) 599
SlaI CTCGAG 1 cut(s) 551
SmiMI CAYNNNNRTG 1 cut(s) 553
SmlI CTYRAG 2 cut(s) 395, 551
SmoI CTYRAG 2 cut(s) 395, 551
Sse9I AATT 4 cut(s) 92, 180, 298, 743
SsiI CCGC 5 cut(s) 26, 130, 483, 641, 714
SspDI GGCGCC 1 cut(s) 107
SspI AATATT 1 cut(s) 450
SspMI CTAG 3 cut(s) 660, 686, 855
StyD4I CCNGG 3 cut(s) 418, 595, 616
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 3 cut(s) 346, 760, 841
TaiI ACGT 1 cut(s) 276
TaqI TCGA 5 cut(s) 86, 169, 340, 552, 835
TasI AATT 4 cut(s) 92, 180, 298, 743
TauI GCSGC 3 cut(s) 132, 485, 716
TfiI GAWTC 2 cut(s) 69, 242
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 2 cut(s) 466, 825
TseI GCWGC 5 cut(s) 287, 290, 509, 518, 826
TspDTI ATGAA 1 cut(s) 736
TspRI CASTG 2 cut(s) 466, 825
VpaK11BI GGWCC 1 cut(s) 599
XapI RAATTY 2 cut(s) 180, 743
XbaI TCTAGA 1 cut(s) 854
XceI RCATGY 1 cut(s) 673
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XhoI CTCGAG 1 cut(s) 551
XmiI GTMKAC 1 cut(s) 86
XspI CTAG 3 cut(s) 660, 686, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.