Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002946

Physical Location & Seq

Genomic Coordinates Forward (+)

38156352 .. 38161398

Gene Structure 5047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1249900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAGTCGCCATTCAAGGCGGAGTTACTGAAGGGAAAGGTGGCCTTGCTGACCGGAGGAGCATCAGGAATCGGGTACGAGATTTCGGTTCAGCTGGGCAAACATGGAGCTTCGGTTGCCGTCATGGGCCGTCGTAAGCATGTCATTGACTCTGCCGTCGAAGCCCTTCGTTCTCAAGGCATTTCTGCTATCGGATTTGAGGGCGACGTGCGAAAAAGAGACGATGCAGCTCGAGTTTTGGAATCGACACTGAAGCATTTTGGTAGGCTTGACATCCTTGTGAATGCTGCAGCCGGAAATTTCCTTGTCCCGTCCGAGGATCTATCCCCGAACGGGTTTCGAACAGTTATAGACATAGACGCCGTTGGCACCTTCACAATGTGTCACGAAGCGCTCAAGTATCTTAAGAAAGGGGCATCAGGGAAGAACTCGGCTGCTGGTGGATCGATAATAAACATAAGCGCGACGTTGCACTACACAGCTACTTGGTATCAGATTCATGTGTCTGCAGCAAAGGCAGCCGTCGACAGCATTACGAGAAGCTTGGCGTTGGAGTGGGGCACAGACTACGATATTAGAGTGAATGGTATCGCACCAGGACCTATCGAAGACACTGCCGGTTTCAGTAAACTTTTACCTCAGGAGATGCTGAGCAAACCCAAAGAGCAGATTCTTGTATCCAAACTGGGGAAGAAATGGGATATTGCTATGGCCGCTCTATATCTTTCATCCGATGCAGGAAAATACATCAACGGAACAACGTTGGTTGTAGACGGGGGAGAGTGGCTGACCAAACCGGCGTATTTTCCGAAGGAGGCAGTGAAGCAACTTTCCCGAGCTGTGGAGCGAAGGTCTAGAGACAAACCAGTTGGTGTTGCTAAGAGCAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

298

Amino Acids

31.77

Weight (kDa)

9.37

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	12 - 263	2.4e-06	SDR-like rossmann domain
adh_short	PF00106	13 - 210	3.7e-41	short chain dehydrogenase
KR	PF08659	15 - 118	7e-08	KR domain
adh_short_C2	PF13561	21 - 260	1.9e-49	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12800
fragaria_vesca	FvH4_3g12490 FvH4_3g12490 FvH4_3g14740 FvH4_3g14740
malus_domestica	MD05G1229700.v1.1 MD05G1249900.v1.1 MD10G1209100.v1.1
prunus_persica	Prupe.4G113900_v2.0.a1 Prupe.4G132600_v2.0.a1
pyrus_communis	pycom05g22760 pycom10g17790
rosa_chinensis	RchiOBHm_Chr5g0020441 RchiOBHm_Chr5g0024271
rosa_laevigata	RLG00000032530 RLG00000032789
rosa_multiflora	Rmu_sc0000033.1_g000008 Rmu_sc0000033.1_g000009 Rmu_sc0002344.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054910 Rroxscaffold_1G00055770 Rroxscaffold_1G00057840
rosa_rugosa	Rorug05G0059300 Rorug05G0082900
rosa_samantha	Rh5AG150100 Rh5AG150300 Rh5AG173400 Rh5BG149300 Rh5BG170300 Rh5CG160900 Rh5CG186400 Rh5DG148500 Rh5DG148700 Rh5DG172900
rosa_wichuraiana	Rw0G000860 Rw5G013280 Rw5G013290 Rw5G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	368
AccBSI	CCGCTC	1 cut(s)	716
AccI	GTMKAC	2 cut(s)	525, 771
AccII	CGCG	1 cut(s)	464
AciI	CCGC	2 cut(s)	20, 714
AclI	AACGTT	1 cut(s)	761
AclWI	GGATC	2 cut(s)	327, 451
AcoI	YGGCCR	1 cut(s)	711
AcsI	RAATTY	1 cut(s)	298
AcuI	CTGAAG	2 cut(s)	50, 272
AcyI	GRCGYC	1 cut(s)	360
AdeI	CACNNNGTG	1 cut(s)	381
AfaI	GTAC	1 cut(s)	77
AfeI	AGCGCT	1 cut(s)	393
AfiI	CCNNNNNNNGG	4 cut(s)	316, 333, 687, 841
AflII	CTTAAG	1 cut(s)	404
AgsI	TTSAA	1 cut(s)	16
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	595
AluBI	AGCT	7 cut(s)	94, 110, 230, 482, 543, 839, 889
AluI	AGCT	7 cut(s)	94, 110, 230, 482, 543, 839, 889
Alw26I	GTCTC	2 cut(s)	213, 852
AlwI	GGATC	2 cut(s)	327, 451
Ama87I	CYCGRG	2 cut(s)	231, 834
Aor51HI	AGCGCT	1 cut(s)	393
AoxI	GGCC	3 cut(s)	42, 127, 711
ApeKI	GCWGC	6 cut(s)	227, 287, 290, 434, 509, 518
ApoI	RAATTY	1 cut(s)	298
Asp700I	GAANNNNTTC	1 cut(s)	165
AspLEI	GCGC	2 cut(s)	394, 464
AspS9I	GGNCC	2 cut(s)	127, 599
AsuII	TTCGAA	1 cut(s)	340
AvaI	CYCGRG	2 cut(s)	231, 834
AvaII	GGWCC	1 cut(s)	599
AxyI	CCTNAGG	1 cut(s)	639
BaeGI	GKGCMC	1 cut(s)	563
BanI	GGYRCC	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	615
BbvI	GCAGC	6 cut(s)	239, 274, 302, 421, 521, 530
BceAI	ACGGC	5 cut(s)	104, 114, 140, 347, 506
BcgI	CGANNNNNNTGC	2 cut(s)	596, 630
BciT130I	CCWGG	1 cut(s)	597
BciVI	GTATCC	1 cut(s)	688
BcoDI	GTCTC	2 cut(s)	213, 852
BfaI	CTAG	1 cut(s)	855
BfmI	CTRYAG	2 cut(s)	288, 507
BfoI	RGCGCY	1 cut(s)	395
BfrI	CTTAAG	1 cut(s)	404
BfuI	GTATCC	1 cut(s)	688
BisI	GCNGC	7 cut(s)	228, 288, 291, 435, 510, 519, 714
BlpI	GCTNAGC	1 cut(s)	650
BlsI	GCNGC	7 cut(s)	229, 289, 292, 436, 511, 520, 715
Bme1390I	CCNGG	1 cut(s)	597
Bme18I	GGWCC	1 cut(s)	599
BmeT110I	CYCGRG	2 cut(s)	231, 834
BmgBI	CACGTC	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	127, 599
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	597
BmrI	ACTGGG	1 cut(s)	695
BmsI	GCATC	5 cut(s)	71, 214, 425, 636, 724
BmuI	ACTGGG	1 cut(s)	695
BpiI	GAAGAC	1 cut(s)	615
Bpu1102I	GCTNAGC	1 cut(s)	650
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	2 cut(s)	159, 380
Bsa29I	ATCGAT	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 836, 866
Bsc4I	CCNNNNNNNGG	4 cut(s)	316, 333, 687, 841
Bse118I	RCCGGY	2 cut(s)	617, 796
Bse1I	ACTGG	2 cut(s)	690, 866
Bse21I	CCTNAGG	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	597
BseCI	ATCGAT	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	2 cut(s)	273, 728
BseLI	CCNNNNNNNGG	4 cut(s)	316, 333, 687, 841
BseMII	CTCAG	2 cut(s)	641, 653
BseNI	ACTGG	2 cut(s)	690, 866
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	563
BseXI	GCAGC	6 cut(s)	239, 274, 302, 421, 521, 530
BseYI	CCCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	464
BshFI	GGCC	3 cut(s)	44, 129, 713
BshNI	GGYRCC	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	446
BsiHKCI	CYCGRG	2 cut(s)	231, 834
BsiSI	CCGG	4 cut(s)	54, 294, 618, 797
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	4 cut(s)	316, 333, 687, 841
BsmAI	GTCTC	2 cut(s)	213, 852
BsmBI	CGTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	3 cut(s)	44, 129, 713
BsoBI	CYCGRG	2 cut(s)	231, 834
Bsp119I	TTCGAA	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	563
Bsp143I	GATC	2 cut(s)	319, 443
Bsp1720I	GCTNAGC	1 cut(s)	650
BspACI	CCGC	2 cut(s)	20, 714
BspANI	GGCC	3 cut(s)	44, 129, 713
BspCNI	CTCAG	2 cut(s)	642, 652
BspDI	ATCGAT	1 cut(s)	446
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	1 cut(s)	370
BspMAI	CTGCAG	2 cut(s)	292, 511
BspPI	GGATC	2 cut(s)	327, 451
BspT104I	TTCGAA	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	368
BspTI	CTTAAG	1 cut(s)	404
BsrBI	CCGCTC	1 cut(s)	716
BsrFI	RCCGGY	2 cut(s)	617, 796
BsrI	ACTGG	2 cut(s)	690, 866
BssAI	RCCGGY	2 cut(s)	617, 796
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	319, 443
BssNI	GRCGYC	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	1 cut(s)	346
BstACI	GRCGYC	1 cut(s)	360
BstAFI	CTTAAG	1 cut(s)	404
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	887
BstDEI	CTNAG	3 cut(s)	639, 650, 879
BstF5I	GGATG	2 cut(s)	273, 728
BstFNI	CGCG	1 cut(s)	464
BstH2I	RGCGCY	1 cut(s)	395
BstHHI	GCGC	2 cut(s)	394, 464
BstKTI	GATC	2 cut(s)	322, 446
BstMAI	GTCTC	2 cut(s)	213, 852
BstMBI	GATC	2 cut(s)	319, 443
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 161, 515, 518, 713
BstNI	CCWGG	1 cut(s)	597
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	595
BstSFI	CTRYAG	2 cut(s)	288, 507
BstSLI	GKGCMC	1 cut(s)	563
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	6 cut(s)	239, 274, 302, 421, 521, 530
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	446
Bsu36I	CCTNAGG	1 cut(s)	639
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	3 cut(s)	44, 129, 713
BsuTUI	ATCGAT	1 cut(s)	446
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	273, 728
BtsI	GCAGTG	2 cut(s)	612, 825
BtsIMutI	CAGTG	3 cut(s)	248, 612, 825
Cac8I	GCNNGC	1 cut(s)	887
CfoI	GCGC	2 cut(s)	394, 464
Cfr10I	RCCGGY	2 cut(s)	617, 796
Cfr13I	GGNCC	2 cut(s)	127, 599
ClaI	ATCGAT	1 cut(s)	446
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	4 cut(s)	104, 124, 140, 500
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	3 cut(s)	639, 650, 879
DpnI	GATC	2 cut(s)	321, 445
DpnII	GATC	2 cut(s)	319, 443
DraIII	CACNNNGTG	1 cut(s)	381
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	711
EciI	GGCGGA	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	599
Eco47III	AGCGCT	1 cut(s)	393
Eco57I	CTGAAG	2 cut(s)	50, 272
Eco81I	CCTNAGG	1 cut(s)	639
Eco88I	CYCGRG	2 cut(s)	231, 834
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	595
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	4 cut(s)	107, 127, 143, 503
FaiI	YATR	9 cut(s)	105, 125, 141, 350, 356, 458, 501, 710, 721
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	4 cut(s)	103, 123, 139, 499
FblI	GTMKAC	2 cut(s)	525, 771
Fnu4HI	GCNGC	7 cut(s)	228, 288, 291, 435, 510, 519, 714
FokI	GGATG	2 cut(s)	260, 715
Fsp4HI	GCNGC	7 cut(s)	228, 288, 291, 435, 510, 519, 714
FspBI	CTAG	1 cut(s)	855
GlaI	GCGC	2 cut(s)	393, 463
GluI	GCNGC	7 cut(s)	228, 288, 291, 435, 510, 519, 714
GsaI	CCCAGC	1 cut(s)	98
HaeII	RGCGCY	1 cut(s)	395
HaeIII	GGCC	3 cut(s)	44, 129, 713
HapII	CCGG	4 cut(s)	54, 294, 618, 797
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	2 cut(s)	394, 464
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	4 cut(s)	107, 127, 143, 503
Hin6I	GCGC	2 cut(s)	392, 462
HinP1I	GCGC	2 cut(s)	392, 462
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HindIII	AAGCTT	2 cut(s)	541, 887
HinfI	GANTC	6 cut(s)	5, 69, 149, 242, 496, 670
HpaII	CCGG	4 cut(s)	54, 294, 618, 797
Hpy166II	GTNNAC	3 cut(s)	526, 629, 772
Hpy188I	TCNGA	5 cut(s)	194, 316, 495, 733, 810
Hpy188III	TCNNGA	5 cut(s)	66, 386, 641, 834, 855
Hpy8I	GTNNAC	3 cut(s)	526, 629, 772
Hpy99I	CGWCG	5 cut(s)	135, 161, 209, 469, 527
HpyAV	CCTTC	5 cut(s)	25, 176, 382, 805, 843
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	3 cut(s)	207, 467, 761
HpyCH4V	TGCA	5 cut(s)	227, 290, 472, 509, 737
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 161, 515, 518, 713
HpyF3I	CTNAG	3 cut(s)	639, 650, 879
HpySE526I	ACGT	3 cut(s)	207, 467, 761
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	107, 127, 143, 503
HspAI	GCGC	2 cut(s)	392, 462
Kzo9I	GATC	2 cut(s)	319, 443
LmnI	GCTCC	3 cut(s)	59, 107, 844
Lsp1109I	GCAGC	6 cut(s)	239, 274, 302, 421, 521, 530
LweI	GCATC	5 cut(s)	71, 214, 425, 636, 724
MaeI	CTAG	1 cut(s)	855
MaeII	ACGT	3 cut(s)	207, 467, 761
MaeIII	GTNAC	2 cut(s)	24, 383
MalI	GATC	2 cut(s)	321, 445
MbiI	CCGCTC	1 cut(s)	716
MboI	GATC	2 cut(s)	319, 443
MboII	GAAGA	3 cut(s)	436, 620, 703
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	563
MluCI	AATT	1 cut(s)	298
MlyI	GAGTC	2 cut(s)	14, 143
MmeI	TCCRAC	1 cut(s)	531
MnlI	CCTC	5 cut(s)	50, 193, 310, 648, 808
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	2 cut(s)	405, 892
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	94
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	4 cut(s)	54, 294, 618, 797
MspR9I	CCNGG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	597
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	5 cut(s)	116, 161, 515, 518, 713
NdeII	GATC	2 cut(s)	319, 443
NlaIII	CATG	4 cut(s)	107, 127, 143, 503
NlaIV	GGNNCC	1 cut(s)	370
NmeAIII	GCCGAG	1 cut(s)	410
NmuCI	GTSAC	1 cut(s)	383
NspI	RCATGY	1 cut(s)	143
NspV	TTCGAA	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	231
PctI	GAATGC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	4 cut(s)	69, 242, 496, 670
PkrI	GCNGC	7 cut(s)	229, 289, 292, 436, 511, 520, 715
PleI	GAGTC	2 cut(s)	13, 143
PpsI	GAGTC	2 cut(s)	13, 143
PpuMI	RGGWCCY	1 cut(s)	599
Psp1406I	AACGTT	1 cut(s)	761
Psp5II	RGGWCCY	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	595
PspFI	CCCAGC	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	2 cut(s)	127, 599
PspPPI	RGGWCCY	1 cut(s)	599
PspXI	VCTCGAGB	1 cut(s)	231
PstI	CTGCAG	2 cut(s)	292, 511
PsuI	RGATCY	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	278
SalI	GTCGAC	1 cut(s)	524
SaqAI	TTAA	2 cut(s)	405, 892
SatI	GCNGC	7 cut(s)	228, 288, 291, 435, 510, 519, 714
Sau3AI	GATC	2 cut(s)	319, 443
Sau96I	GGNCC	2 cut(s)	127, 599
SchI	GAGTC	2 cut(s)	14, 143
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	1 cut(s)	563
SfaNI	GCATC	5 cut(s)	71, 214, 425, 636, 724
SfcI	CTRYAG	2 cut(s)	288, 507
Sfr274I	CTCGAG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	340
SinI	GGWCC	1 cut(s)	599
SlaI	CTCGAG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	4 cut(s)	174, 231, 395, 404
SmoI	CTYRAG	4 cut(s)	174, 231, 395, 404
Sse9I	AATT	1 cut(s)	298
SsiI	CCGC	2 cut(s)	20, 714
SspMI	CTAG	1 cut(s)	855
StyD4I	CCNGG	1 cut(s)	595
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	3 cut(s)	210, 470, 764
TaqI	TCGA	7 cut(s)	159, 232, 245, 340, 446, 525, 606
TasI	AATT	1 cut(s)	298
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	4 cut(s)	69, 242, 496, 670
Tru1I	TTAA	2 cut(s)	405, 892
Tru9I	TTAA	2 cut(s)	405, 892
TscAI	CASTG	3 cut(s)	255, 619, 825
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	6 cut(s)	227, 287, 290, 434, 509, 518
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	2 cut(s)	488, 717
TspGWI	ACGGA	1 cut(s)	768
TspRI	CASTG	3 cut(s)	255, 619, 825
Vha464I	CTTAAG	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	1 cut(s)	298
XbaI	TCTAGA	1 cut(s)	854
XceI	RCATGY	1 cut(s)	143
XhoI	CTCGAG	1 cut(s)	231
XmiI	GTMKAC	2 cut(s)	525, 771
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.