Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002946

Physical Location & Seq

Genomic Coordinates Reverse (-)

4063320 .. 4064859

Gene Structure 1540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGACTCTCCGTTCAAACCTGATGTCGTCAGAGGTCAAGTGGCTCTCATCACCGGTGGTGGATCCGGTATCGGTTTTGAGATCTCTTCTCAGTTTGGCAAACATGGAGCTTCTATCGCTATCATGGGACGACGAAAACAAGTCCTCGATGACGCCGTCTCTGCTCTTCGATCTCTTGGAATCCAGGCTATTGGATTGGAAGGTGATGTTCGTAAGCAAGAAGATGCGAGAAGAGTTGTGGAAGCAACTTTTCAGCATTTTGGTAAACTTGATATTCTTGTTAACGCCGCTGCTGGCAATTTTCTGGCTGCTGCTGAGGATTTGTCTCCTAATGGCTTCAGAACAGTCTTAGACATTGATGCGGTAGGAACATTCAACATGTGTCACGCAGCTCTCAAGTATCTTAAGAAAGGAGCGCCTGGAAGAGACTCATCAAGCGGTGGAGGTTCGATTATTAACATTAGCGCGACTTTGCACTACACGGCTTCTTGGTACCAAATACATGTCTCTGCAGCCAAGGCTGCAGTTGATGCTACCACAAGAAACTTGGCATTGGAGTGGGGAACTGACTATGATATTAGAGTGAACGGGATTGCTCCAGGTCCTATTGGAGGTACACCTGGAATGAGTAAACTTGTACCTGAGGAGATTGAAAACAAAACCAGAGAGTACATGCCTCTTTATAAAGTTGGAGAGAAGTGGGATATCGCTATGGCTGCACTCTACCTCAGCTGTGATTCTGGGAAATATGTGAGCGGACTAACAATGGTGGTAGATGGAGGACTGTGGCTTAGCAAACCTCGCCACTTGCCTAAAGAAGCGGTGAAGCAACTCTCTCGTGCGGTGGAGAAGAGGTCTAGGGCCAAGCCTGTTGGTCTCCCAACCAGCAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0016020 GO:0031090 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

298

Amino Acids

31.8

Weight (kDa)

9.19

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	13 - 212	1.3e-40	short chain dehydrogenase
KR	PF08659	15 - 130	2.3e-08	KR domain
adh_short_C2	PF13561	22 - 262	2.4e-47	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12800
fragaria_vesca	FvH4_3g12490 FvH4_3g12490 FvH4_3g14740 FvH4_3g14740
malus_domestica	MD05G1229700.v1.1 MD05G1249900.v1.1 MD10G1209100.v1.1
prunus_persica	Prupe.4G113900_v2.0.a1 Prupe.4G132600_v2.0.a1
pyrus_communis	pycom05g22760 pycom10g17790
rosa_chinensis	RchiOBHm_Chr5g0020441 RchiOBHm_Chr5g0024271
rosa_laevigata	RLG00000032530 RLG00000032789
rosa_multiflora	Rmu_sc0000033.1_g000008 Rmu_sc0000033.1_g000009 Rmu_sc0002344.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054910 Rroxscaffold_1G00055770 Rroxscaffold_1G00057840
rosa_rugosa	Rorug05G0059300 Rorug05G0082900
rosa_samantha	Rh5AG150100 Rh5AG150300 Rh5AG173400 Rh5BG149300 Rh5BG170300 Rh5CG160900 Rh5CG186400 Rh5DG148500 Rh5DG148700 Rh5DG172900
rosa_wichuraiana	Rw0G000860 Rw5G013280 Rw5G013290 Rw5G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	684
Acc65I	GGTACC	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	492
AccBSI	CCGCTC	1 cut(s)	756
AccII	CGCG	1 cut(s)	467
AciI	CCGC	6 cut(s)	288, 362, 438, 756, 821, 842
AclWI	GGATC	2 cut(s)	57, 70
AcuI	CTGAAG	1 cut(s)	322
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	4 cut(s)	494, 616, 639, 671
AfiI	CCNNNNNNNGG	1 cut(s)	611
AflII	CTTAAG	1 cut(s)	404
AflIII	ACRYGT	2 cut(s)	378, 502
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	3 cut(s)	16, 376, 653
AjnI	CCWGG	4 cut(s)	183, 418, 598, 619
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	4 cut(s)	110, 392, 732, 892
AluI	AGCT	4 cut(s)	110, 392, 732, 892
Alw26I	GTCTC	5 cut(s)	163, 330, 420, 511, 881
AlwI	GGATC	2 cut(s)	57, 70
AoxI	GGCC	1 cut(s)	861
ApeKI	GCWGC	7 cut(s)	290, 308, 311, 389, 512, 521, 716
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
AsiGI	ACCGGT	1 cut(s)	53
Asp718I	GGTACC	1 cut(s)	492
AspLEI	GCGC	2 cut(s)	418, 467
AspS9I	GGNCC	2 cut(s)	602, 861
AsuHPI	GGTGA	3 cut(s)	43, 215, 835
AvaII	GGWCC	1 cut(s)	602
AxyI	CCTNAGG	1 cut(s)	642
BamHI	GGATCC	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	492
BauI	CACGAG	1 cut(s)	837
BbvCI	CCTCAGC	2 cut(s)	315, 728
BbvI	GCAGC	7 cut(s)	277, 295, 298, 401, 508, 524, 703
BccI	CCATC	1 cut(s)	770
BceAI	ACGGC	2 cut(s)	140, 498
BcgI	CGANNNNNNTGC	2 cut(s)	818, 852
BciT130I	CCWGG	4 cut(s)	185, 420, 600, 621
BcoDI	GTCTC	5 cut(s)	163, 330, 420, 511, 881
BfaI	CTAG	1 cut(s)	858
BfmI	CTRYAG	3 cut(s)	510, 522, 893
BfoI	RGCGCY	1 cut(s)	419
BfrI	CTTAAG	1 cut(s)	404
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	8 cut(s)	288, 291, 309, 312, 390, 513, 522, 717
BlpI	GCTNAGC	1 cut(s)	791
BlsI	GCNGC	8 cut(s)	289, 292, 310, 313, 391, 514, 523, 718
Bme1390I	CCNGG	4 cut(s)	185, 420, 600, 621
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	2 cut(s)	602, 861
BmiI	GGNNCC	2 cut(s)	64, 494
BmrFI	CCNGG	4 cut(s)	185, 420, 600, 621
BmsI	GCATC	3 cut(s)	214, 349, 520
BpmI	CTGGAG	1 cut(s)	582
Bpu10I	CCTNAGC	2 cut(s)	315, 728
Bpu1102I	GCTNAGC	1 cut(s)	791
BpuEI	CTTGAG	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	881
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	2 cut(s)	53, 65
BsaXI	ACNNNNNCTCC	2 cut(s)	839, 869
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse118I	RCCGGY	1 cut(s)	53
Bse21I	CCTNAGG	1 cut(s)	642
BseBI	CCWGG	4 cut(s)	185, 420, 600, 621
BseDI	CCNNGG	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseMII	CTCAG	4 cut(s)	104, 306, 633, 742
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	7 cut(s)	277, 295, 298, 401, 508, 524, 703
BsgI	GTGCAG	1 cut(s)	702
Bsh1236I	CGCG	1 cut(s)	467
BshFI	GGCC	1 cut(s)	863
BshNI	GGYRCC	1 cut(s)	492
BshTI	ACCGGT	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	54, 66
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	5 cut(s)	163, 330, 420, 511, 881
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	863
Bso31I	GGTCTC	1 cut(s)	881
Bsp143I	GATC	3 cut(s)	62, 81, 170
Bsp1720I	GCTNAGC	1 cut(s)	791
BspACI	CCGC	6 cut(s)	288, 362, 438, 756, 821, 842
BspANI	GGCC	1 cut(s)	863
BspCNI	CTCAG	4 cut(s)	103, 307, 634, 741
BspFNI	CGCG	1 cut(s)	467
BspLI	GGNNCC	2 cut(s)	64, 494
BspMAI	CTGCAG	2 cut(s)	514, 526
BspPI	GGATC	2 cut(s)	57, 70
BspQI	GCTCTTC	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	492
BspTI	CTTAAG	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	881
BsrBI	CCGCTC	1 cut(s)	756
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	3 cut(s)	62, 81, 170
BssNI	GRCGYC	1 cut(s)	153
BssSI	CACGAG	1 cut(s)	837
BssT1I	CCWWGG	1 cut(s)	516
Bst2BI	CACGAG	1 cut(s)	837
Bst2UI	CCWGG	4 cut(s)	185, 420, 600, 621
Bst4CI	ACNGT	2 cut(s)	346, 786
Bst6I	CTCTTC	5 cut(s)	91, 171, 226, 418, 845
BstACI	GRCGYC	1 cut(s)	153
BstAFI	CTTAAG	1 cut(s)	404
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstC8I	GCNNGC	2 cut(s)	295, 890
BstDEI	CTNAG	6 cut(s)	90, 315, 349, 642, 728, 791
BstENI	CCTNNNNNAGG	1 cut(s)	609
BstFNI	CGCG	1 cut(s)	467
BstH2I	RGCGCY	1 cut(s)	419
BstHHI	GCGC	2 cut(s)	418, 467
BstKTI	GATC	3 cut(s)	65, 84, 173
BstMAI	GTCTC	5 cut(s)	163, 330, 420, 511, 881
BstMBI	GATC	3 cut(s)	62, 81, 170
BstMWI	GCNNNNNNNGC	7 cut(s)	116, 161, 518, 521, 530, 716, 801
BstNI	CCWGG	4 cut(s)	185, 420, 600, 621
BstNSI	RCATGY	3 cut(s)	382, 506, 676
BstSCI	CCNGG	4 cut(s)	183, 418, 598, 619
BstSFI	CTRYAG	3 cut(s)	510, 522, 893
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	7 cut(s)	277, 295, 298, 401, 508, 524, 703
BstX2I	RGATCY	2 cut(s)	62, 81
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	2 cut(s)	62, 81
Bsu36I	CCTNAGG	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	863
Cac8I	GCNNGC	2 cut(s)	295, 890
CfoI	GCGC	2 cut(s)	418, 467
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	602, 861
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	4 cut(s)	493, 615, 638, 670
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	5 cut(s)	104, 124, 379, 503, 673
CviQI	GTAC	4 cut(s)	493, 615, 638, 670
DdeI	CTNAG	6 cut(s)	90, 315, 349, 642, 728, 791
DpnI	GATC	3 cut(s)	64, 83, 172
DpnII	GATC	3 cut(s)	62, 81, 170
Eam1104I	CTCTTC	5 cut(s)	91, 171, 226, 418, 845
EarI	CTCTTC	5 cut(s)	91, 171, 226, 418, 845
Eco130I	CCWWGG	1 cut(s)	516
Eco31I	GGTCTC	1 cut(s)	881
Eco32I	GATATC	1 cut(s)	706
Eco47I	GGWCC	1 cut(s)	602
Eco57I	CTGAAG	1 cut(s)	322
Eco81I	CCTNAGG	1 cut(s)	642
EcoNI	CCTNNNNNAGG	1 cut(s)	609
EcoO109I	RGGNCCY	1 cut(s)	602
EcoRII	CCWGG	4 cut(s)	183, 418, 598, 619
EcoRV	GATATC	1 cut(s)	706
EcoT14I	CCWWGG	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	5 cut(s)	107, 127, 382, 506, 676
FaiI	YATR	9 cut(s)	105, 125, 380, 504, 573, 674, 684, 713, 750
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	5 cut(s)	103, 123, 378, 502, 672
Fnu4HI	GCNGC	8 cut(s)	288, 291, 309, 312, 390, 513, 522, 717
Fsp4HI	GCNGC	8 cut(s)	288, 291, 309, 312, 390, 513, 522, 717
FspBI	CTAG	1 cut(s)	858
GlaI	GCGC	2 cut(s)	417, 466
GluI	GCNGC	8 cut(s)	288, 291, 309, 312, 390, 513, 522, 717
GsuI	CTGGAG	1 cut(s)	582
HaeII	RGCGCY	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	863
HapII	CCGG	2 cut(s)	54, 66
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	2 cut(s)	418, 467
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	5 cut(s)	107, 127, 382, 506, 676
Hin6I	GCGC	2 cut(s)	416, 465
HinP1I	GCGC	2 cut(s)	416, 465
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	4 cut(s)	5, 180, 428, 737
HpaI	GTTAAC	1 cut(s)	283
HpaII	CCGG	2 cut(s)	54, 66
HphI	GGTGA	3 cut(s)	43, 215, 835
Hpy166II	GTNNAC	5 cut(s)	266, 283, 586, 617, 632
Hpy188I	TCNGA	2 cut(s)	32, 341
Hpy8I	GTNNAC	5 cut(s)	266, 283, 586, 617, 632
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	2 cut(s)	346, 786
HpyCH4V	TGCA	4 cut(s)	475, 512, 524, 719
HpyF10VI	GCNNNNNNNGC	7 cut(s)	116, 161, 518, 521, 530, 716, 801
HpyF3I	CTNAG	6 cut(s)	90, 315, 349, 642, 728, 791
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	5 cut(s)	107, 127, 382, 506, 676
HspAI	GCGC	2 cut(s)	416, 465
KpnI	GGTACC	1 cut(s)	496
KspAI	GTTAAC	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	62, 81, 170
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	3 cut(s)	107, 413, 601
Lsp1109I	GCAGC	7 cut(s)	277, 295, 298, 401, 508, 524, 703
LweI	GCATC	3 cut(s)	214, 349, 520
MaeI	CTAG	1 cut(s)	858
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	3 cut(s)	64, 83, 172
MbiI	CCGCTC	1 cut(s)	756
MboI	GATC	3 cut(s)	62, 81, 170
MboII	GAAGA	6 cut(s)	78, 158, 233, 243, 435, 862
MflI	RGATCY	2 cut(s)	62, 81
MluCI	AATT	1 cut(s)	298
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	670
MseI	TTAA	3 cut(s)	282, 405, 456
MslI	CAYNNNNRTG	1 cut(s)	556
MspA1I	CMGCKG	2 cut(s)	290, 732
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	2 cut(s)	54, 66
MspR9I	CCNGG	4 cut(s)	185, 420, 600, 621
MvaI	CCWGG	4 cut(s)	185, 420, 600, 621
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	7 cut(s)	116, 161, 518, 521, 530, 716, 801
NdeII	GATC	3 cut(s)	62, 81, 170
NlaIII	CATG	5 cut(s)	107, 127, 382, 506, 676
NlaIV	GGNNCC	2 cut(s)	64, 494
NmuCI	GTSAC	1 cut(s)	383
NspI	RCATGY	3 cut(s)	382, 506, 676
PciI	ACATGT	2 cut(s)	378, 502
PciSI	GCTCTTC	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	180, 737
PflFI	GACNNNGTC	1 cut(s)	155
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	8 cut(s)	289, 292, 310, 313, 391, 514, 523, 718
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PpuMI	RGGWCCY	1 cut(s)	602
PscI	ACATGT	2 cut(s)	378, 502
PsiI	TTATAA	1 cut(s)	684
Psp5II	RGGWCCY	1 cut(s)	602
Psp6I	CCWGG	4 cut(s)	183, 418, 598, 619
PspGI	CCWGG	4 cut(s)	183, 418, 598, 619
PspN4I	GGNNCC	2 cut(s)	64, 494
PspPI	GGNCC	2 cut(s)	602, 861
PspPPI	RGGWCCY	1 cut(s)	602
PstI	CTGCAG	2 cut(s)	514, 526
PsuI	RGATCY	2 cut(s)	62, 81
PsyI	GACNNNGTC	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	732
RsaI	GTAC	4 cut(s)	494, 616, 639, 671
RsaNI	GTAC	4 cut(s)	493, 615, 638, 670
RseI	CAYNNNNRTG	1 cut(s)	556
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	282, 405, 456
SatI	GCNGC	8 cut(s)	288, 291, 309, 312, 390, 513, 522, 717
Sau3AI	GATC	3 cut(s)	62, 81, 170
Sau96I	GGNCC	2 cut(s)	602, 861
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	4 cut(s)	185, 420, 600, 621
SfaNI	GCATC	3 cut(s)	214, 349, 520
SfcI	CTRYAG	3 cut(s)	510, 522, 893
SgrAI	CRCCGGYG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	556
SmlI	CTYRAG	2 cut(s)	395, 404
SmoI	CTYRAG	2 cut(s)	395, 404
Sse9I	AATT	1 cut(s)	298
SsiI	CCGC	6 cut(s)	288, 362, 438, 756, 821, 842
SspMI	CTAG	1 cut(s)	858
StyD4I	CCNGG	4 cut(s)	183, 418, 598, 619
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	2 cut(s)	346, 786
TaqI	TCGA	3 cut(s)	147, 169, 449
TasI	AATT	1 cut(s)	298
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	2 cut(s)	180, 737
Tru1I	TTAA	3 cut(s)	282, 405, 456
Tru9I	TTAA	3 cut(s)	282, 405, 456
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	7 cut(s)	290, 308, 311, 389, 512, 521, 716
Tsp45I	GTSAC	1 cut(s)	383
Tth111I	GACNNNGTC	1 cut(s)	155
Vha464I	CTTAAG	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	602
XagI	CCTNNNNNAGG	1 cut(s)	609
XceI	RCATGY	3 cut(s)	382, 506, 676
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XspI	CTAG	1 cut(s)	858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.