Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002946

Physical Location & Seq

Genomic Coordinates Forward (+)

7332580 .. 7335819

Gene Structure 3240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G132600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAGTCACCGTTCAAGGCTGATGTGGTGAAAGGGAAGGTGGCTCTGATAACAGGAGGAGGGTCGGGGATTGGGTTCGAAATATCAACCCAATTTGGCAAGCATGGAGCCTCCATTGCCATCATGGGTCGACGCAAGCAAGTCCTTGACTCTGCTGTCTCGGCTCTTCAGTCTCTCGGAATTCAGGCTGTTGGTTTTGAGGGGGATGTTCGTAAACATGAAGATGCAAAAAGAGTGGTGGAATCAACTTTCCAGCATTTTGGTAGGCTTGACATACTTGTGAATGGTGCAGCTGGCAATTTTCTTGTATCAGCCGAGGATCTATCCCCTAATGGATTTCGAACAGTTATGGATATTGATGCTGTTGGAACATTCACAATGTGCTACGAAGCACTCAAGTATCTTAAAAAAGGAGGACCAGGAAGGAGGTCATCTGGTGGTGGAACAATATTGAACATCAGTGCTACTTTACATTATACAGCTTCTTGGTATCAAGTCCATGTAGCAGCTGCGAAGGCAGCGATTGATGCCACTACAAGAAACTTGGCATTGGAGTGGGGAGCTGACTATGACATTAGGGTGAATGGAATAGCTCCAGGCCCCATTGATGATACGCCTGGCATGAGTAAACTTGCACCTTCGGAGATAAATAGCAAAGCTAGAGATTACATGCCTTTGTATAAACTAGGGGACAAATGGGATATTGCTATGGCCGCCCTTTACCTTGCTTCGGATGCAGGGAAATTTATAAATGGAACTGTCATTATAGCTGATGGAGGACTTTGGCTGAGCCGGCCTCGCCATCTGCCAAAAGATGCGGTGAAGCAGCTTTCACGATCAGTAGAAAAGAGATCTAGAGATGCACCAGTAGGGGTTCCAAGGAGCAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0016020 GO:0031090 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

298

Amino Acids

31.73

Weight (kDa)

9.37

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12800
fragaria_vesca	FvH4_3g12490 FvH4_3g12490 FvH4_3g14740 FvH4_3g14740
malus_domestica	MD05G1229700.v1.1 MD05G1249900.v1.1 MD10G1209100.v1.1
prunus_persica	Prupe.4G113900_v2.0.a1 Prupe.4G132600_v2.0.a1
pyrus_communis	pycom05g22760 pycom10g17790
rosa_chinensis	RchiOBHm_Chr5g0020441 RchiOBHm_Chr5g0024271
rosa_laevigata	RLG00000032530 RLG00000032789
rosa_multiflora	Rmu_sc0000033.1_g000008 Rmu_sc0000033.1_g000009 Rmu_sc0002344.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054910 Rroxscaffold_1G00055770 Rroxscaffold_1G00057840
rosa_rugosa	Rorug05G0059300 Rorug05G0082900
rosa_samantha	Rh5AG150100 Rh5AG150300 Rh5AG173400 Rh5BG149300 Rh5BG170300 Rh5CG160900 Rh5CG186400 Rh5DG148500 Rh5DG148700 Rh5DG172900
rosa_wichuraiana	Rw0G000860 Rw5G013280 Rw5G013290 Rw5G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
AasI	GACNNNNNNGTC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	130
AciI	CCGC	2 cut(s)	714, 818
AclWI	GGATC	1 cut(s)	327
AcoI	YGGCCR	1 cut(s)	711
AcsI	RAATTY	2 cut(s)	180, 743
AcuI	CTGAAG	1 cut(s)	152
AdeI	CACNNNGTG	1 cut(s)	381
AfiI	CCNNNNNNNGG	1 cut(s)	730
AgsI	TTSAA	2 cut(s)	16, 454
AjnI	CCWGG	3 cut(s)	418, 595, 616
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	8 cut(s)	293, 482, 509, 563, 593, 659, 770, 829
AluI	AGCT	8 cut(s)	293, 482, 509, 563, 593, 659, 770, 829
Alw26I	GTCTC	2 cut(s)	163, 177
AlwI	GGATC	1 cut(s)	327
AoxI	GGCC	3 cut(s)	598, 711, 794
ApeKI	GCWGC	5 cut(s)	290, 506, 509, 518, 826
ApoI	RAATTY	2 cut(s)	180, 743
AspS9I	GGNCC	2 cut(s)	416, 599
AsuHPI	GGTGA	3 cut(s)	40, 592, 832
AsuII	TTCGAA	2 cut(s)	78, 340
AvaII	GGWCC	1 cut(s)	416
BaeI	ACNNNNGTAYC	2 cut(s)	383, 416
BbvI	GCAGC	5 cut(s)	302, 496, 518, 530, 838
BccI	CCATC	3 cut(s)	128, 767, 810
BciT130I	CCWGG	3 cut(s)	420, 597, 618
BcoDI	GTCTC	2 cut(s)	163, 177
BfaI	CTAG	3 cut(s)	660, 686, 855
BglII	AGATCT	1 cut(s)	851
BisI	GCNGC	6 cut(s)	291, 507, 510, 519, 714, 827
BlpI	GCTNAGC	1 cut(s)	788
BlsI	GCNGC	6 cut(s)	292, 508, 511, 520, 715, 828
Bme1390I	CCNGG	3 cut(s)	420, 597, 618
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	416, 599
BmiI	GGNNCC	3 cut(s)	109, 601, 876
BmrFI	CCNGG	3 cut(s)	420, 597, 618
BmsI	GCATC	6 cut(s)	214, 349, 517, 724, 805, 850
BplI	GAGNNNNNCTC	2 cut(s)	781, 813
BpmI	CTGGAG	1 cut(s)	579
Bpu1102I	GCTNAGC	1 cut(s)	788
Bpu14I	TTCGAA	2 cut(s)	78, 340
BpuEI	CTTGAG	1 cut(s)	380
BsaJI	CCNNGG	2 cut(s)	315, 878
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	730
Bse118I	RCCGGY	1 cut(s)	792
Bse1I	ACTGG	1 cut(s)	866
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	3 cut(s)	420, 597, 618
BseDI	CCNNGG	2 cut(s)	315, 878
BseGI	GGATG	2 cut(s)	211, 739
BseLI	CCNNNNNNNGG	1 cut(s)	730
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	779
BseNI	ACTGG	1 cut(s)	866
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	5 cut(s)	302, 496, 518, 530, 838
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	3 cut(s)	600, 713, 796
BsiSI	CCGG	1 cut(s)	793
BslFI	GGGAC	1 cut(s)	704
BslI	CCNNNNNNNGG	1 cut(s)	730
BsmAI	GTCTC	2 cut(s)	163, 177
BsmFI	GGGAC	1 cut(s)	704
BsnI	GGCC	3 cut(s)	600, 713, 796
Bsp119I	TTCGAA	2 cut(s)	78, 340
Bsp143I	GATC	3 cut(s)	319, 836, 851
Bsp1720I	GCTNAGC	1 cut(s)	788
BspACI	CCGC	2 cut(s)	714, 818
BspANI	GGCC	3 cut(s)	600, 713, 796
BspCNI	CTCAG	1 cut(s)	780
BspLI	GGNNCC	3 cut(s)	109, 601, 876
BspPI	GGATC	1 cut(s)	327
BspQI	GCTCTTC	1 cut(s)	171
BspT104I	TTCGAA	2 cut(s)	78, 340
BsrDI	GCAATG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	792
BsrI	ACTGG	1 cut(s)	866
BssAI	RCCGGY	1 cut(s)	792
BssECI	CCNNGG	2 cut(s)	315, 878
BssMI	GATC	3 cut(s)	319, 836, 851
BssT1I	CCWWGG	1 cut(s)	878
Bst2UI	CCWGG	3 cut(s)	420, 597, 618
Bst4CI	ACNGT	3 cut(s)	12, 346, 760
Bst6I	CTCTTC	1 cut(s)	171
BstBI	TTCGAA	2 cut(s)	78, 340
BstC8I	GCNNGC	4 cut(s)	101, 137, 295, 794
BstDEI	CTNAG	1 cut(s)	788
BstF5I	GGATG	2 cut(s)	211, 739
BstKTI	GATC	3 cut(s)	322, 839, 854
BstMAI	GTCTC	2 cut(s)	163, 177
BstMBI	GATC	3 cut(s)	319, 836, 851
BstMWI	GCNNNNNNNGC	9 cut(s)	116, 161, 515, 518, 527, 713, 734, 793, 798
BstNI	CCWGG	3 cut(s)	420, 597, 618
BstNSI	RCATGY	1 cut(s)	673
BstSCI	CCNGG	3 cut(s)	418, 595, 616
BstV1I	GCAGC	5 cut(s)	302, 496, 518, 530, 838
BstX2I	RGATCY	2 cut(s)	319, 851
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstYI	RGATCY	2 cut(s)	319, 851
BsuRI	GGCC	3 cut(s)	600, 713, 796
BtsCI	GGATG	2 cut(s)	211, 739
BtsIMutI	CAGTG	1 cut(s)	466
Cac8I	GCNNGC	4 cut(s)	101, 137, 295, 794
Cfr10I	RCCGGY	1 cut(s)	792
Cfr13I	GGNCC	2 cut(s)	416, 599
CseI	GACGC	1 cut(s)	141
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	6 cut(s)	104, 124, 218, 500, 622, 670
DdeI	CTNAG	1 cut(s)	788
DpnI	GATC	3 cut(s)	321, 838, 853
DpnII	GATC	3 cut(s)	319, 836, 851
DraIII	CACNNNGTG	1 cut(s)	381
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	711
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	878
Eco47I	GGWCC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	180
EcoRII	CCWGG	3 cut(s)	418, 595, 616
EcoT14I	CCWWGG	1 cut(s)	878
ErhI	CCWWGG	1 cut(s)	878
FaeI	CATG	6 cut(s)	107, 127, 221, 503, 625, 673
FaqI	GGGAC	1 cut(s)	704
FatI	CATG	6 cut(s)	103, 123, 217, 499, 621, 669
FblI	GTMKAC	1 cut(s)	130
Fnu4HI	GCNGC	6 cut(s)	291, 507, 510, 519, 714, 827
FokI	GGATG	2 cut(s)	218, 746
Fsp4HI	GCNGC	6 cut(s)	291, 507, 510, 519, 714, 827
FspBI	CTAG	3 cut(s)	660, 686, 855
GluI	GCNGC	6 cut(s)	291, 507, 510, 519, 714, 827
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	3 cut(s)	600, 713, 796
HapII	CCGG	1 cut(s)	793
HgaI	GACGC	1 cut(s)	141
Hin1II	CATG	6 cut(s)	107, 127, 221, 503, 625, 673
HincII	GTYRAC	1 cut(s)	131
HindII	GTYRAC	1 cut(s)	131
HinfI	GANTC	3 cut(s)	5, 149, 242
HpaII	CCGG	1 cut(s)	793
HphI	GGTGA	3 cut(s)	40, 592, 832
Hpy166II	GTNNAC	3 cut(s)	131, 215, 629
Hpy188I	TCNGA	4 cut(s)	48, 179, 643, 733
Hpy188III	TCNNGA	2 cut(s)	834, 855
Hpy8I	GTNNAC	3 cut(s)	131, 215, 629
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	4 cut(s)	31, 417, 508, 648
HpyCH4III	ACNGT	3 cut(s)	12, 346, 760
HpyCH4V	TGCA	5 cut(s)	227, 290, 635, 737, 863
HpyF10VI	GCNNNNNNNGC	9 cut(s)	116, 161, 515, 518, 527, 713, 734, 793, 798
HpyF3I	CTNAG	1 cut(s)	788
Hsp92II	CATG	6 cut(s)	107, 127, 221, 503, 625, 673
KroI	GCCGGC	1 cut(s)	792
KroNI	GCCGGC	1 cut(s)	794
Kzo9I	GATC	3 cut(s)	319, 836, 851
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	4 cut(s)	107, 560, 598, 882
Lsp1109I	GCAGC	5 cut(s)	302, 496, 518, 530, 838
LweI	GCATC	6 cut(s)	214, 349, 517, 724, 805, 850
MaeI	CTAG	3 cut(s)	660, 686, 855
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	3 cut(s)	321, 838, 853
MboI	GATC	3 cut(s)	319, 836, 851
MboII	GAAGA	2 cut(s)	158, 233
MflI	RGATCY	2 cut(s)	319, 851
MluCI	AATT	4 cut(s)	92, 180, 298, 743
MlyI	GAGTC	2 cut(s)	14, 143
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	9 cut(s)	50, 53, 121, 193, 310, 407, 420, 770, 807
MroNI	GCCGGC	1 cut(s)	792
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	4 cut(s)	222, 278, 553, 578
MspA1I	CMGCKG	2 cut(s)	293, 509
MspI	CCGG	1 cut(s)	793
MspR9I	CCNGG	3 cut(s)	420, 597, 618
MvaI	CCWGG	3 cut(s)	420, 597, 618
MwoI	GCNNNNNNNGC	9 cut(s)	116, 161, 515, 518, 527, 713, 734, 793, 798
NaeI	GCCGGC	1 cut(s)	794
NdeII	GATC	3 cut(s)	319, 836, 851
NgoMIV	GCCGGC	1 cut(s)	792
NlaIII	CATG	6 cut(s)	107, 127, 221, 503, 625, 673
NlaIV	GGNNCC	3 cut(s)	109, 601, 876
NmeAIII	GCCGAG	2 cut(s)	140, 340
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	673
NspV	TTCGAA	2 cut(s)	78, 340
PciSI	GCTCTTC	1 cut(s)	171
PdiI	GCCGGC	1 cut(s)	794
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	6 cut(s)	292, 508, 511, 520, 715, 828
PleI	GAGTC	2 cut(s)	13, 143
PpsI	GAGTC	2 cut(s)	13, 143
PsiI	TTATAA	1 cut(s)	749
Psp6I	CCWGG	3 cut(s)	418, 595, 616
PspGI	CCWGG	3 cut(s)	418, 595, 616
PspN4I	GGNNCC	3 cut(s)	109, 601, 876
PspPI	GGNCC	2 cut(s)	416, 599
PsuI	RGATCY	2 cut(s)	319, 851
PvuII	CAGCTG	2 cut(s)	293, 509
RseI	CAYNNNNRTG	4 cut(s)	222, 278, 553, 578
SalI	GTCGAC	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	6 cut(s)	291, 507, 510, 519, 714, 827
Sau3AI	GATC	3 cut(s)	319, 836, 851
Sau96I	GGNCC	2 cut(s)	416, 599
SchI	GAGTC	2 cut(s)	14, 143
ScrFI	CCNGG	3 cut(s)	420, 597, 618
SfaNI	GCATC	6 cut(s)	214, 349, 517, 724, 805, 850
SfuI	TTCGAA	2 cut(s)	78, 340
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	4 cut(s)	222, 278, 553, 578
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	4 cut(s)	92, 180, 298, 743
SsiI	CCGC	2 cut(s)	714, 818
SspI	AATATT	1 cut(s)	450
SspMI	CTAG	3 cut(s)	660, 686, 855
StyD4I	CCNGG	3 cut(s)	418, 595, 616
StyI	CCWWGG	1 cut(s)	878
TaaI	ACNGT	3 cut(s)	12, 346, 760
TaqI	TCGA	3 cut(s)	78, 130, 340
TasI	AATT	4 cut(s)	92, 180, 298, 743
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	5 cut(s)	290, 506, 509, 518, 826
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	234
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	2 cut(s)	180, 743
XbaI	TCTAGA	1 cut(s)	854
XceI	RCATGY	1 cut(s)	673
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	130
XspI	CTAG	3 cut(s)	660, 686, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.