Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002946

Physical Location & Seq

Genomic Coordinates Forward (+)

7167389 .. 7171663

Gene Structure 4275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0082900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGGCAGCTCCAGCTAAACCAGAAGAGATAAGCCATCCACCAATGGATCAGCTTCAGGGATTGGAGTACTGCATTGACTCAAACCCATCTTGGGGGGAGGCAATTGCTTTGGGTTTTCAGCACTACATTTTGGCCTTGGGAACTGCTGTTATGATCCCTTCATTTCTTGTTCCTTTGATGGGTGGCACTGATGGTGACAAAGTGAGAGTGATACAGACTCTGCTCTTCATTGAAGGAATTAATACACTTCTGCAGACACTGTTTGGAACAAGATTGCCAACTGTGATTGGAGGGTCTTATGCATTCATGGTTCCCATTATATCCATTATTCATGATTCTTCGTTGGAAACTATTGGCGATCCTCATACTAGATTTATAAACACCATGAGAGCAGTCCAAGGTGCCCTCATAGTATCGTCAAGCATACAGATTATTCTGGGATACAGTCAAATTTGGGCCATCTGTTCCAGGTTCTTCAGCCCACTTGGAATGGTTCCTGTTATTGCATTGGTGGGTTTCGGCATGTTTGATAGAGGCTTCCCAGTGGTTGGGAGATGTGTTGAAATTGGCATTCCAATGCTAATCCTATTTGTAGCTTTCTCTCAGTACTTAAAGAACTTCCATGCAAGACAGATACCAGTACTAGAGCGATTTGCGCTTATTATATCAATCACAGTAATATGGGCATATGCACACCTCTTGACAGCCAGTGGTGCATACAGACACCGCCCAGAAGCTACCCAATTAAGTTGCCGAACTGACAGGGCCAACCTCATTTCCTCTGCTCCATGGATAAAAATACCATATCCTCTTCAGTGGGGTGCCCCTACCTTTAGCGCTGGTCACTCTTTTGGTATGATGGCAGCTGTTCTAGTTTCGTTGATTGAGTCAACTGGAGCATACAAGGCTGCATCACGTCTTGCAAGTGCTACACCACCTCCAGCTCATGTTCTTAGCCGTGGTATCGGATGGCAGGGGATAGGAATCCTTCTTAATGGACTATTTGGAACATTGACAGGCTCGACAGTCTCTGTAGAAAATGTGGGGCTTCTTGGTAGCACTCGTGTTGGAAGCCGTAGGGTTATTCAAATCTCGGCTGGTTTTATGATATTCTTCTCCATGTTGGGAAAATTTGGAGCTTTATTTGCATCAATACCCTTCCCCATATTTGCTGCTGCATATTGCGTATTGTTTGGTTTTGTTGCTTCGGTGGGGCTATCCTTCTTGCAATTCACAAACATGAACTCGATGAGAAACCTTTTTATCGTTGGCGTATCTTTGTTTTTGGGTTTGTCTGTGCCTGAGTATTTCAGGGAATACAGTATAATGGCTCATCATGCTCCAGCTCATACAAAAGCTGGATGGTTCAATGATTATCTTAATACCATCTTCTCATCATCTCCAACTGTGGCCTTGCTTGTCGCCGTTTTCTTAGATAACACACTTGAATACAAGGAAAGTGCAAGAGACAGAGGAATGCCATGGTGGGCCAAATTTCGGGCATTCAAAGGGGACAGCCGAAATGAAGAGTTTTACACTCTCCCCTTCAACCTTAATCGATTCTTCCCTCCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009553 GO:0009561 GO:0009791 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0090406 GO:0120025 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

525

Amino Acids

57.47

Weight (kDa)

9.03

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xan_ur_permease	PF00860	33 - 437	3.1e-63	Permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12800
fragaria_vesca	FvH4_3g12490 FvH4_3g12490 FvH4_3g14740 FvH4_3g14740
malus_domestica	MD05G1229700.v1.1 MD05G1249900.v1.1 MD10G1209100.v1.1
prunus_persica	Prupe.4G113900_v2.0.a1 Prupe.4G132600_v2.0.a1
pyrus_communis	pycom05g22760 pycom10g17790
rosa_chinensis	RchiOBHm_Chr5g0020441 RchiOBHm_Chr5g0024271
rosa_laevigata	RLG00000032530 RLG00000032789
rosa_multiflora	Rmu_sc0000033.1_g000008 Rmu_sc0000033.1_g000009 Rmu_sc0002344.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054910 Rroxscaffold_1G00055770 Rroxscaffold_1G00057840
rosa_rugosa	Rorug05G0059300 Rorug05G0082900
rosa_samantha	Rh5AG150100 Rh5AG150300 Rh5AG173400 Rh5BG149300 Rh5BG170300 Rh5CG160900 Rh5CG186400 Rh5DG148500 Rh5DG148700 Rh5DG172900
rosa_wichuraiana	Rw0G000860 Rw5G013280 Rw5G013290 Rw5G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
AccB1I	GGYRCC	2 cut(s)	401, 821
AccB7I	CCANNNNNTGG	1 cut(s)	548
AciI	CCGC	1 cut(s)	727
AclWI	GGATC	3 cut(s)	54, 148, 353
AcsI	RAATTY	3 cut(s)	450, 1130, 1493
AcuI	CTGAAG	3 cut(s)	38, 460, 797
AfaI	GTAC	3 cut(s)	68, 608, 642
AfeI	AGCGCT	1 cut(s)	838
AfiI	CCNNNNNNNGG	5 cut(s)	91, 92, 179, 548, 1497
AgsI	TTSAA	7 cut(s)	233, 563, 1088, 1369, 1448, 1507, 1549
AjiI	CACGTC	1 cut(s)	917
AjnI	CCWGG	1 cut(s)	467
Alw26I	GTCTC	2 cut(s)	1033, 1461
AlwI	GGATC	3 cut(s)	54, 148, 353
AlwNI	CAGNNNCTG	3 cut(s)	220, 259, 1031
Aor51HI	AGCGCT	1 cut(s)	838
AoxI	GGCC	5 cut(s)	132, 456, 765, 1410, 1488
ApeKI	GCWGC	5 cut(s)	5, 863, 908, 1172, 1175
ApoI	RAATTY	3 cut(s)	450, 1130, 1493
AseI	ATTAAT	1 cut(s)	240
AspLEI	GCGC	2 cut(s)	658, 839
AspS9I	GGNCC	3 cut(s)	456, 765, 1488
AsuHPI	GGTGA	1 cut(s)	206
BaeGI	GKGCMC	2 cut(s)	406, 826
BanI	GGYRCC	2 cut(s)	401, 821
BauI	CACGAG	1 cut(s)	1062
BbvI	GCAGC	5 cut(s)	17, 875, 895, 1159, 1162
BccI	CCATC	9 cut(s)	42, 94, 172, 185, 467, 853, 963, 1356, 1394
BceAI	ACGGC	3 cut(s)	942, 1059, 1409
BciT130I	CCWGG	1 cut(s)	469
BciVI	GTATCC	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	1033, 1461
BfaI	CTAG	3 cut(s)	369, 644, 872
BfmI	CTRYAG	2 cut(s)	251, 1032
BfoI	RGCGCY	1 cut(s)	840
BfuI	GTATCC	1 cut(s)	434
BisI	GCNGC	5 cut(s)	6, 864, 909, 1173, 1176
BlsI	GCNGC	5 cut(s)	7, 865, 910, 1174, 1177
BmcAI	AGTACT	3 cut(s)	68, 608, 642
Bme1390I	CCNGG	1 cut(s)	469
BmgBI	CACGTC	1 cut(s)	917
BmgT120I	GGNCC	3 cut(s)	456, 765, 1488
BmiI	GGNNCC	4 cut(s)	312, 403, 495, 823
BmrFI	CCNGG	1 cut(s)	469
BmrI	ACTGGG	1 cut(s)	536
BmsI	GCATC	2 cut(s)	920, 1157
BmuI	ACTGGG	1 cut(s)	536
BpmI	CTGGAG	3 cut(s)	915, 924, 1326
Bsa29I	ATCGAT	1 cut(s)	1558
BsaBI	GATNNNNATC	1 cut(s)	983
BsaJI	CCNNGG	5 cut(s)	135, 397, 788, 958, 1481
BsaXI	ACNNNNNCTCC	2 cut(s)	922, 952
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 92, 179, 548, 1497
Bse1I	ACTGG	4 cut(s)	542, 638, 708, 898
Bse8I	GATNNNNATC	1 cut(s)	983
BseBI	CCWGG	1 cut(s)	469
BseCI	ATCGAT	1 cut(s)	1558
BseDI	CCNNGG	5 cut(s)	135, 397, 788, 958, 1481
BseGI	GGATG	3 cut(s)	34, 974, 1367
BseJI	GATNNNNATC	1 cut(s)	983
BseLI	CCNNNNNNNGG	5 cut(s)	91, 92, 179, 548, 1497
BseMII	CTCAG	2 cut(s)	617, 1293
BseNI	ACTGG	4 cut(s)	542, 638, 708, 898
BseSI	GKGCMC	2 cut(s)	406, 826
BseXI	GCAGC	5 cut(s)	17, 875, 895, 1159, 1162
BshFI	GGCC	5 cut(s)	134, 458, 767, 1412, 1490
BshNI	GGYRCC	2 cut(s)	401, 821
BshVI	ATCGAT	1 cut(s)	1558
BslFI	GGGAC	1 cut(s)	1526
BslI	CCNNNNNNNGG	5 cut(s)	91, 92, 179, 548, 1497
BsmAI	GTCTC	2 cut(s)	1033, 1461
BsmFI	GGGAC	1 cut(s)	1526
BsmI	GAATGC	4 cut(s)	302, 570, 1482, 1502
BsnI	GGCC	5 cut(s)	134, 458, 767, 1412, 1490
Bsp1286I	GDGCHC	2 cut(s)	406, 826
Bsp143I	GATC	3 cut(s)	46, 153, 358
Bsp19I	CCATGG	2 cut(s)	788, 1481
BspACI	CCGC	1 cut(s)	727
BspANI	GGCC	5 cut(s)	134, 458, 767, 1412, 1490
BspCNI	CTCAG	2 cut(s)	616, 1294
BspDI	ATCGAT	1 cut(s)	1558
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	4 cut(s)	312, 403, 495, 823
BspMAI	CTGCAG	1 cut(s)	255
BspPI	GGATC	3 cut(s)	54, 148, 353
BspQI	GCTCTTC	1 cut(s)	230
BspT107I	GGYRCC	2 cut(s)	401, 821
BsrI	ACTGG	4 cut(s)	542, 638, 708, 898
BssECI	CCNNGG	5 cut(s)	135, 397, 788, 958, 1481
BssMI	GATC	3 cut(s)	46, 153, 358
BssSI	CACGAG	1 cut(s)	1062
BssT1I	CCWWGG	4 cut(s)	135, 397, 788, 1481
Bst2BI	CACGAG	1 cut(s)	1062
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	7 cut(s)	261, 283, 446, 676, 1027, 1322, 1408
Bst6I	CTCTTC	4 cut(s)	18, 230, 816, 1521
BstDEI	CTNAG	4 cut(s)	603, 953, 1302, 1432
BstDSI	CCRYGG	3 cut(s)	788, 958, 1481
BstF5I	GGATG	3 cut(s)	34, 974, 1367
BstH2I	RGCGCY	1 cut(s)	840
BstHHI	GCGC	2 cut(s)	658, 839
BstKTI	GATC	3 cut(s)	49, 156, 361
BstMAI	GTCTC	2 cut(s)	1033, 1461
BstMBI	GATC	3 cut(s)	46, 153, 358
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 655, 713, 905, 1145, 1337
BstNI	CCWGG	1 cut(s)	469
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	467
BstSFI	CTRYAG	2 cut(s)	251, 1032
BstSLI	GKGCMC	2 cut(s)	406, 826
BstV1I	GCAGC	5 cut(s)	17, 875, 895, 1159, 1162
Bsu15I	ATCGAT	1 cut(s)	1558
BsuI	GTATCC	1 cut(s)	434
BsuRI	GGCC	5 cut(s)	134, 458, 767, 1412, 1490
BsuTUI	ATCGAT	1 cut(s)	1558
BtgI	CCRYGG	3 cut(s)	788, 958, 1481
BtrI	CACGTC	1 cut(s)	917
BtsCI	GGATG	3 cut(s)	34, 974, 1367
BtsIMutI	CAGTG	5 cut(s)	186, 257, 549, 715, 821
CaiI	CAGNNNCTG	3 cut(s)	220, 259, 1031
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	2 cut(s)	658, 839
Cfr13I	GGNCC	3 cut(s)	456, 765, 1488
ClaI	ATCGAT	1 cut(s)	1558
Csp6I	GTAC	3 cut(s)	67, 607, 641
CviQI	GTAC	3 cut(s)	67, 607, 641
DdeI	CTNAG	4 cut(s)	603, 953, 1302, 1432
DpnI	GATC	3 cut(s)	48, 155, 360
DpnII	GATC	3 cut(s)	46, 153, 358
Eam1104I	CTCTTC	4 cut(s)	18, 230, 816, 1521
EarI	CTCTTC	4 cut(s)	18, 230, 816, 1521
Eco130I	CCWWGG	4 cut(s)	135, 397, 788, 1481
Eco47III	AGCGCT	1 cut(s)	838
Eco57I	CTGAAG	3 cut(s)	38, 460, 797
EcoRII	CCWGG	1 cut(s)	467
EcoT14I	CCWWGG	4 cut(s)	135, 397, 788, 1481
EcoT22I	ATGCAT	1 cut(s)	304
ErhI	CCWWGG	4 cut(s)	135, 397, 788, 1481
FaqI	GGGAC	1 cut(s)	1526
FauNDI	CATATG	1 cut(s)	688
Fnu4HI	GCNGC	5 cut(s)	6, 864, 909, 1173, 1176
FokI	GGATG	3 cut(s)	21, 981, 1374
Fsp4HI	GCNGC	5 cut(s)	6, 864, 909, 1173, 1176
FspBI	CTAG	3 cut(s)	369, 644, 872
GlaI	GCGC	2 cut(s)	657, 838
GluI	GCNGC	5 cut(s)	6, 864, 909, 1173, 1176
GsuI	CTGGAG	3 cut(s)	915, 924, 1326
HaeII	RGCGCY	1 cut(s)	840
HaeIII	GGCC	5 cut(s)	134, 458, 767, 1412, 1490
HhaI	GCGC	2 cut(s)	658, 839
Hin6I	GCGC	2 cut(s)	656, 837
HinP1I	GCGC	2 cut(s)	656, 837
HincII	GTYRAC	1 cut(s)	891
HindII	GTYRAC	1 cut(s)	891
HinfI	GANTC	6 cut(s)	77, 217, 335, 887, 984, 1560
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	891
Hpy188I	TCNGA	1 cut(s)	968
Hpy188III	TCNNGA	2 cut(s)	332, 700
Hpy8I	GTNNAC	1 cut(s)	891
HpyAV	CCTTC	6 cut(s)	168, 227, 998, 1168, 1231, 1555
HpyCH4III	ACNGT	7 cut(s)	261, 283, 446, 676, 1027, 1322, 1408
HpyCH4IV	ACGT	1 cut(s)	916
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 655, 713, 905, 1145, 1337
HpyF3I	CTNAG	4 cut(s)	603, 953, 1302, 1432
HpySE526I	ACGT	1 cut(s)	916
HspAI	GCGC	2 cut(s)	656, 837
Kzo9I	GATC	3 cut(s)	46, 153, 358
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	5 cut(s)	13, 790, 896, 1136, 1345
Lsp1109I	GCAGC	5 cut(s)	17, 875, 895, 1159, 1162
LweI	GCATC	2 cut(s)	920, 1157
MaeI	CTAG	3 cut(s)	369, 644, 872
MaeII	ACGT	1 cut(s)	916
MaeIII	GTNAC	2 cut(s)	194, 842
MalI	GATC	3 cut(s)	48, 155, 360
MboI	GATC	3 cut(s)	46, 153, 358
MboII	GAAGA	9 cut(s)	35, 217, 330, 466, 803, 1105, 1381, 1538, 1555
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	2 cut(s)	406, 826
MluCI	AATT	8 cut(s)	102, 237, 450, 564, 743, 1130, 1229, 1493
MlyI	GAGTC	3 cut(s)	71, 211, 896
MmeI	TCCRAC	3 cut(s)	324, 1048, 1427
Mph1103I	ATGCAT	1 cut(s)	304
MseI	TTAA	7 cut(s)	240, 611, 746, 993, 1380, 1554, 1576
MslI	CAYNNNNRTG	2 cut(s)	575, 1238
MspA1I	CMGCKG	1 cut(s)	866
MspR9I	CCNGG	1 cut(s)	469
MunI	CAATTG	1 cut(s)	102
Mva1269I	GAATGC	4 cut(s)	302, 570, 1482, 1502
MvaI	CCWGG	1 cut(s)	469
MwoI	GCNNNNNNNGC	6 cut(s)	11, 655, 713, 905, 1145, 1337
NcoI	CCATGG	2 cut(s)	788, 1481
NdeI	CATATG	1 cut(s)	688
NdeII	GATC	3 cut(s)	46, 153, 358
NlaIV	GGNNCC	4 cut(s)	312, 403, 495, 823
NmeAIII	GCCGAG	1 cut(s)	1073
NmuCI	GTSAC	2 cut(s)	194, 842
NsiI	ATGCAT	1 cut(s)	304
NspI	RCATGY	1 cut(s)	526
PagI	TCATGA	1 cut(s)	331
PciSI	GCTCTTC	1 cut(s)	230
PctI	GAATGC	4 cut(s)	302, 570, 1482, 1502
PfeI	GAWTC	3 cut(s)	335, 984, 1560
PflMI	CCANNNNNTGG	1 cut(s)	548
PkrI	GCNGC	5 cut(s)	7, 865, 910, 1174, 1177
PleI	GAGTC	3 cut(s)	71, 211, 895
PpsI	GAGTC	3 cut(s)	71, 211, 895
PshBI	ATTAAT	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	4 cut(s)	312, 403, 495, 823
PspPI	GGNCC	3 cut(s)	456, 765, 1488
PstI	CTGCAG	1 cut(s)	255
PstNI	CAGNNNCTG	3 cut(s)	220, 259, 1031
PvuII	CAGCTG	1 cut(s)	866
RsaI	GTAC	3 cut(s)	68, 608, 642
RsaNI	GTAC	3 cut(s)	67, 607, 641
RseI	CAYNNNNRTG	2 cut(s)	575, 1238
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	7 cut(s)	240, 611, 746, 993, 1380, 1554, 1576
SatI	GCNGC	5 cut(s)	6, 864, 909, 1173, 1176
Sau3AI	GATC	3 cut(s)	46, 153, 358
Sau96I	GGNCC	3 cut(s)	456, 765, 1488
ScaI	AGTACT	3 cut(s)	68, 608, 642
SchI	GAGTC	3 cut(s)	71, 211, 896
ScrFI	CCNGG	1 cut(s)	469
SduI	GDGCHC	2 cut(s)	406, 826
SfaNI	GCATC	2 cut(s)	920, 1157
SfcI	CTRYAG	2 cut(s)	251, 1032
SmiMI	CAYNNNNRTG	2 cut(s)	575, 1238
Sse9I	AATT	8 cut(s)	102, 237, 450, 564, 743, 1130, 1229, 1493
SsiI	CCGC	1 cut(s)	727
SspMI	CTAG	3 cut(s)	369, 644, 872
StyD4I	CCNGG	1 cut(s)	467
StyI	CCWWGG	4 cut(s)	135, 397, 788, 1481
TaaI	ACNGT	7 cut(s)	261, 283, 446, 676, 1027, 1322, 1408
TaiI	ACGT	1 cut(s)	919
TaqI	TCGA	3 cut(s)	1022, 1247, 1558
TasI	AATT	8 cut(s)	102, 237, 450, 564, 743, 1130, 1229, 1493
TatI	WGTACW	3 cut(s)	66, 606, 640
TfiI	GAWTC	3 cut(s)	335, 984, 1560
Tru1I	TTAA	7 cut(s)	240, 611, 746, 993, 1380, 1554, 1576
Tru9I	TTAA	7 cut(s)	240, 611, 746, 993, 1380, 1554, 1576
TscAI	CASTG	5 cut(s)	193, 264, 549, 715, 821
TseFI	GTSAC	2 cut(s)	194, 842
TseI	GCWGC	5 cut(s)	5, 863, 908, 1172, 1175
Tsp45I	GTSAC	2 cut(s)	194, 842
TspDTI	ATGAA	6 cut(s)	150, 217, 295, 320, 1256, 1539
TspRI	CASTG	5 cut(s)	193, 264, 549, 715, 821
Van91I	CCANNNNNTGG	1 cut(s)	548
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	3 cut(s)	450, 1130, 1493
XceI	RCATGY	1 cut(s)	526
XspI	CTAG	3 cut(s)	369, 644, 872
ZrmI	AGTACT	3 cut(s)	68, 608, 642
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.