Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002946

Physical Location & Seq

Genomic Coordinates Reverse (-)

15711665 .. 15715839

Gene Structure 4175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG150100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGTCACCATTCAAGGCGGAGATACTGAAGGGCAAGGTGGCGTTGTTGACCGGAGGAGCCTCGGGAATTGGGTACGAGATATCAGTTCAGTTGGGCAAACATGGAGCCTCCATTGCCGTCATGGGTCGTCGTAAAAACGTCATCGACTCCGCTGTTGAATCCCTTCACTCCCTTGGCATTCCGGCTATTGGACTTGTGGGTGATGTTCGCAAAAGAGATGATGCAGTTAGAGTTTTGGAATCAACTGTCAAGCATTTTGGTAGGCTCGATATCCTTGTGAATGCTGCTGCTGGCAATTTCCTTGTCCCGTCTGAGGATCTATCCCCAAATGGATTTCGAACAGTTTTAGATATAGATGCTGTTGGCACCTTTACGATGTGTCACGAAGCACTCAAGTATCTCAAGAAGGGGGCACCAGGGAAGGACTCATCTGTCGGTGGAACAATAATAAACATAAGTGCCACTTTGCATTATACAGCTACTTGGTATCAAATTCATGTATCTGCAGCAAAGGCTGCTGTTGATAGCATTACAAGAAGCTTGGCATTGGAATGGGGCACAGATTATGATATCAGAGTCAATGGTATTGCCCCAGGACCTATTGAAGACACTGCTGGCTTTAGTAAACTGTTACCTCAGGAGATATTGAGCAAATTTAAGGTGAATGCTCCTACAACAAAAGTAGGACAGAAATGGGATATTGCTATGGCTGCAGTATATCTTGCGTCTACCGCAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

247

Amino Acids

26.09

Weight (kDa)

8.55

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	13 - 211	7.6e-40	short chain dehydrogenase
KR	PF08659	15 - 134	5.8e-07	KR domain
adh_short_C2	PF13561	21 - 245	7.4e-41	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12800
fragaria_vesca	FvH4_3g12490 FvH4_3g12490 FvH4_3g14740 FvH4_3g14740
malus_domestica	MD05G1229700.v1.1 MD05G1249900.v1.1 MD10G1209100.v1.1
prunus_persica	Prupe.4G113900_v2.0.a1 Prupe.4G132600_v2.0.a1
pyrus_communis	pycom05g22760 pycom10g17790
rosa_chinensis	RchiOBHm_Chr5g0020441 RchiOBHm_Chr5g0024271
rosa_laevigata	RLG00000032530 RLG00000032789
rosa_multiflora	Rmu_sc0000033.1_g000008 Rmu_sc0000033.1_g000009 Rmu_sc0002344.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054910 Rroxscaffold_1G00055770 Rroxscaffold_1G00057840
rosa_rugosa	Rorug05G0059300 Rorug05G0082900
rosa_samantha	Rh5AG150100 Rh5AG150300 Rh5AG173400 Rh5BG149300 Rh5BG170300 Rh5CG160900 Rh5CG186400 Rh5DG148500 Rh5DG148700 Rh5DG172900
rosa_wichuraiana	Rw0G000860 Rw5G013280 Rw5G013290 Rw5G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
Acc36I	ACCTGC	1 cut(s)	728
AccB1I	GGYRCC	2 cut(s)	368, 415
AccI	GTMKAC	1 cut(s)	731
AciI	CCGC	3 cut(s)	20, 153, 735
AclWI	GGATC	1 cut(s)	327
AcsI	RAATTY	2 cut(s)	495, 656
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	191, 316
AgsI	TTSAA	3 cut(s)	16, 161, 608
AjnI	CCWGG	2 cut(s)	418, 595
AluBI	AGCT	2 cut(s)	482, 543
AluI	AGCT	2 cut(s)	482, 543
AlwI	GGATC	1 cut(s)	327
Ama87I	CYCGRG	1 cut(s)	64
ApeKI	GCWGC	5 cut(s)	287, 290, 509, 518, 713
ApoI	RAATTY	2 cut(s)	495, 656
Asp700I	GAANNNNTTC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	599
AsuHPI	GGTGA	2 cut(s)	215, 676
AsuII	TTCGAA	1 cut(s)	340
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	599
AxyI	CCTNAGG	1 cut(s)	639
BaeGI	GKGCMC	2 cut(s)	418, 563
BaeI	ACNNNNGTAYC	2 cut(s)	383, 416
BanI	GGYRCC	2 cut(s)	368, 415
BbsI	GAAGAC	1 cut(s)	615
BbvI	GCAGC	5 cut(s)	274, 277, 505, 521, 700
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	2 cut(s)	420, 597
BfmI	CTRYAG	2 cut(s)	507, 714
BfuAI	ACCTGC	1 cut(s)	728
BisI	GCNGC	5 cut(s)	288, 291, 510, 519, 714
BlsI	GCNGC	5 cut(s)	289, 292, 511, 520, 715
Bme1390I	CCNGG	2 cut(s)	420, 597
Bme18I	GGWCC	1 cut(s)	599
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	4 cut(s)	61, 109, 370, 417
BmrFI	CCNGG	2 cut(s)	420, 597
BmsI	GCATC	2 cut(s)	214, 349
BpiI	GAAGAC	1 cut(s)	615
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	2 cut(s)	380, 389
BsaJI	CCNNGG	4 cut(s)	63, 175, 419, 595
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 316
Bse21I	CCTNAGG	1 cut(s)	639
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	2 cut(s)	420, 597
BseDI	CCNNGG	4 cut(s)	63, 175, 419, 595
BseLI	CCNNNNNNNGG	2 cut(s)	191, 316
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	306, 653
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	2 cut(s)	418, 563
BseXI	GCAGC	5 cut(s)	274, 277, 505, 521, 700
BshNI	GGYRCC	2 cut(s)	368, 415
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	54, 185
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	2 cut(s)	191, 316
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	3 cut(s)	180, 289, 673
BsoBI	CYCGRG	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	340
Bsp1286I	GDGCHC	2 cut(s)	418, 563
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	3 cut(s)	20, 153, 735
BspCNI	CTCAG	2 cut(s)	307, 652
BspLI	GGNNCC	4 cut(s)	61, 109, 370, 417
BspMAI	CTGCAG	2 cut(s)	511, 718
BspMI	ACCTGC	1 cut(s)	728
BspPI	GGATC	1 cut(s)	327
BspT104I	TTCGAA	1 cut(s)	340
BspT107I	GGYRCC	2 cut(s)	368, 415
BsrDI	GCAATG	1 cut(s)	114
BssECI	CCNNGG	4 cut(s)	63, 175, 419, 595
BssMI	GATC	1 cut(s)	319
BssT1I	CCWWGG	1 cut(s)	175
Bst2UI	CCWGG	2 cut(s)	420, 597
Bst4CI	ACNGT	3 cut(s)	250, 346, 633
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	295, 619
BstDEI	CTNAG	2 cut(s)	315, 639
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 515, 518, 713, 734
BstNI	CCWGG	2 cut(s)	420, 597
BstSCI	CCNGG	2 cut(s)	418, 595
BstSFI	CTRYAG	2 cut(s)	507, 714
BstSLI	GKGCMC	2 cut(s)	418, 563
BstV1I	GCAGC	5 cut(s)	274, 277, 505, 521, 700
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
Bsu36I	CCTNAGG	1 cut(s)	639
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	612
BveI	ACCTGC	1 cut(s)	728
Cac8I	GCNNGC	2 cut(s)	295, 619
Cfr13I	GGNCC	1 cut(s)	599
CseI	GACGC	1 cut(s)	717
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	3 cut(s)	104, 124, 500
CviJI	RGCY	9 cut(s)	62, 110, 188, 268, 482, 518, 543, 621, 713
CviKI_1	RGCY	9 cut(s)	62, 110, 188, 268, 482, 518, 543, 621, 713
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	2 cut(s)	315, 639
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
DrdI	GACNNNNNNGTC	1 cut(s)	434
DseDI	GACNNNNNNGTC	1 cut(s)	434
EciI	GGCGGA	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	175
Eco32I	GATATC	3 cut(s)	84, 274, 574
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	418, 595
EcoRV	GATATC	3 cut(s)	84, 274, 574
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	3 cut(s)	107, 127, 503
FaiI	YATR	9 cut(s)	105, 125, 356, 458, 477, 501, 570, 710, 721
FalI	AAGNNNNNCTT	2 cut(s)	451, 483
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	3 cut(s)	103, 123, 499
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	5 cut(s)	288, 291, 510, 519, 714
Fsp4HI	GCNGC	5 cut(s)	288, 291, 510, 519, 714
GluI	GCNGC	5 cut(s)	288, 291, 510, 519, 714
HapII	CCGG	2 cut(s)	54, 185
HgaI	GACGC	1 cut(s)	717
Hin1II	CATG	3 cut(s)	107, 127, 503
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	541
HinfI	GANTC	6 cut(s)	5, 149, 161, 242, 428, 579
HpaII	CCGG	2 cut(s)	54, 185
HphI	GGTGA	2 cut(s)	215, 676
Hpy166II	GTNNAC	3 cut(s)	51, 629, 732
Hpy188I	TCNGA	2 cut(s)	316, 578
Hpy188III	TCNNGA	4 cut(s)	66, 386, 406, 641
Hpy8I	GTNNAC	3 cut(s)	51, 629, 732
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	4 cut(s)	25, 176, 403, 418
HpyCH4III	ACNGT	3 cut(s)	250, 346, 633
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	4 cut(s)	227, 472, 509, 716
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 515, 518, 713, 734
HpyF3I	CTNAG	2 cut(s)	315, 639
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	3 cut(s)	107, 127, 503
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	3 cut(s)	59, 107, 676
Lsp1109I	GCAGC	5 cut(s)	274, 277, 505, 521, 700
LweI	GCATC	2 cut(s)	214, 349
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	3 cut(s)	6, 383, 633
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	1 cut(s)	620
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	2 cut(s)	418, 563
MluCI	AATT	4 cut(s)	69, 298, 495, 656
MlyI	GAGTC	4 cut(s)	14, 143, 422, 588
MnlI	CCTC	5 cut(s)	50, 73, 121, 310, 648
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	1 cut(s)	660
MslI	CAYNNNNRTG	1 cut(s)	553
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	54, 185
MspR9I	CCNGG	2 cut(s)	420, 597
Mva1269I	GAATGC	3 cut(s)	180, 289, 673
MvaI	CCWGG	2 cut(s)	420, 597
MwoI	GCNNNNNNNGC	5 cut(s)	116, 515, 518, 713, 734
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	3 cut(s)	107, 127, 503
NlaIV	GGNNCC	4 cut(s)	61, 109, 370, 417
NmuCI	GTSAC	2 cut(s)	6, 383
NspV	TTCGAA	1 cut(s)	340
PctI	GAATGC	3 cut(s)	180, 289, 673
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	161, 242
PkrI	GCNGC	5 cut(s)	289, 292, 511, 520, 715
PleI	GAGTC	4 cut(s)	13, 143, 422, 587
PpsI	GAGTC	4 cut(s)	13, 143, 422, 587
PpuMI	RGGWCCY	1 cut(s)	599
Psp5II	RGGWCCY	1 cut(s)	599
Psp6I	CCWGG	2 cut(s)	418, 595
PspGI	CCWGG	2 cut(s)	418, 595
PspN4I	GGNNCC	4 cut(s)	61, 109, 370, 417
PspPI	GGNCC	1 cut(s)	599
PspPPI	RGGWCCY	1 cut(s)	599
PstI	CTGCAG	2 cut(s)	511, 718
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	553
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	5 cut(s)	288, 291, 510, 519, 714
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	4 cut(s)	14, 143, 422, 588
ScrFI	CCNGG	2 cut(s)	420, 597
SduI	GDGCHC	2 cut(s)	418, 563
SetI	ASST	9 cut(s)	42, 144, 374, 484, 545, 604, 640, 666, 742
SfaNI	GCATC	2 cut(s)	214, 349
SfcI	CTRYAG	2 cut(s)	507, 714
SfuI	TTCGAA	1 cut(s)	340
SinI	GGWCC	1 cut(s)	599
SmiMI	CAYNNNNRTG	1 cut(s)	553
SmlI	CTYRAG	2 cut(s)	395, 404
SmoI	CTYRAG	2 cut(s)	395, 404
Sse9I	AATT	4 cut(s)	69, 298, 495, 656
SsiI	CCGC	3 cut(s)	20, 153, 735
StyD4I	CCNGG	2 cut(s)	418, 595
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	3 cut(s)	250, 346, 633
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	3 cut(s)	147, 270, 340
TasI	AATT	4 cut(s)	69, 298, 495, 656
TfiI	GAWTC	2 cut(s)	161, 242
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	2 cut(s)	6, 383
TseI	GCWGC	5 cut(s)	287, 290, 509, 518, 713
Tsp45I	GTSAC	2 cut(s)	6, 383
TspDTI	ATGAA	1 cut(s)	488
TspRI	CASTG	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	2 cut(s)	495, 656
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	731
XmnI	GAANNNNTTC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.