Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002946

Physical Location & Seq

Genomic Coordinates Forward (+)

9087100 .. 9089957

Gene Structure 2858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAGTCACCGTTTAAGGCAGATGCGTTGAGAGGGAAGGTGGCGTTGATAACCGGAGGCGGGTCGGGTATCGGGTTCGAGATTTCGACCCAGTTCGGGAAACATGGTGGGAGTGTGGCTATTATGGGGAGGAGGAAGCAAGTGTTGGACTCTGCTGTGGCTGCTCTTAAGGGTTTTGGAATTGCGGCTATTGGCTTCGAGGGGGATGTGCGTAAACAGGAAGATGCAAAAAGAGTGGTGGAATCGACTTTCCAGCATTTTGGTAGGCTTGACATACTTGTGAATTCGGCAGCAGGAAATTTTCTTGCATCAGCAGAAGATCTATCCCCTAATGGATTTCGAACAGTTTTGGATATTGATTCTGTTGGTACATTCACAATGTGCTACGAAGCACTCAAGTATCTTAAAAAAGGAGGACCAGGAAGGAGCTCATCTAGTGGCGGAACAATATTGAACATCAGTGCAACTTTACATTATTCCGCTTCTTGGTATCAAGTTCATGTGTCTGCAGCCAAGGCAGCTGTCGATGCCACTATGCGAAACTTGGCATTGGAGTGGGGAACTGACTATGATATCAGAGTCAATGGAATTGCTCCGGGTCCTATTGGTGATACGCCTGGCATGAGTAAACTTGCACCTAAGGAGATAGGTAGCAAAGCTAGAGAGTACATGCCTTTGTATAAACTAGGTGACAAATGGGATATCGCTATGGCTGCTCTATACCTTTCATCAGATGCAGGGAAATTTATCAATGGAGCTATCATCGTTGTTGATGGAGGACTTTGGCTGAGCCGGCCTCGCCATCTGCCAAAAGATGCTGTGAAGCAGCTTTCCCGCACAGTAGAGAAGAGATCTAGAAATGCACCAGTAGGGGTTCCAAGCAGCAAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0016020 GO:0031090 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

298

Amino Acids

31.56

Weight (kDa)

9.52

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	10 - 263	1e-05	SDR-like rossmann domain
adh_short	PF00106	13 - 212	2e-38	short chain dehydrogenase
adh_short_C2	PF13561	22 - 261	5.2e-47	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12800
fragaria_vesca	FvH4_3g12490 FvH4_3g12490 FvH4_3g14740 FvH4_3g14740
malus_domestica	MD05G1229700.v1.1 MD05G1249900.v1.1 MD10G1209100.v1.1
prunus_persica	Prupe.4G113900_v2.0.a1 Prupe.4G132600_v2.0.a1
pyrus_communis	pycom05g22760 pycom10g17790
rosa_chinensis	RchiOBHm_Chr5g0020441 RchiOBHm_Chr5g0024271
rosa_laevigata	RLG00000032530 RLG00000032789
rosa_multiflora	Rmu_sc0000033.1_g000008 Rmu_sc0000033.1_g000009 Rmu_sc0002344.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054910 Rroxscaffold_1G00055770 Rroxscaffold_1G00057840
rosa_rugosa	Rorug05G0059300 Rorug05G0082900
rosa_samantha	Rh5AG150100 Rh5AG150300 Rh5AG173400 Rh5BG149300 Rh5BG170300 Rh5CG160900 Rh5CG186400 Rh5DG148500 Rh5DG148700 Rh5DG172900
rosa_wichuraiana	Rw0G000860 Rw5G013280 Rw5G013290 Rw5G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	60, 185, 441, 480, 835
AcsI	RAATTY	3 cut(s)	283, 298, 743
AdeI	CACNNNGTG	1 cut(s)	381
AfaI	GTAC	2 cut(s)	370, 668
AfiI	CCNNNNNNNGG	3 cut(s)	60, 96, 486
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	454
AjnI	CCWGG	2 cut(s)	418, 616
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AluBI	AGCT	6 cut(s)	429, 521, 659, 758, 829, 889
AluI	AGCT	6 cut(s)	429, 521, 659, 758, 829, 889
Alw21I	GWGCWC	1 cut(s)	431
AoxI	GGCC	1 cut(s)	794
ApeKI	GCWGC	7 cut(s)	161, 290, 509, 518, 713, 826, 882
ApoI	RAATTY	3 cut(s)	283, 298, 743
AspS9I	GGNCC	2 cut(s)	416, 599
AsuC2I	CCSGG	1 cut(s)	597
AsuHPI	GGTGA	2 cut(s)	620, 701
AsuII	TTCGAA	1 cut(s)	340
AvaII	GGWCC	2 cut(s)	416, 599
AxyI	CCTNAGG	1 cut(s)	639
BaeI	ACNNNNGTAYC	2 cut(s)	383, 416
BanII	GRGCYC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	6 cut(s)	148, 302, 521, 530, 700, 838
BccI	CCATC	2 cut(s)	767, 810
BciT130I	CCWGG	2 cut(s)	420, 618
BcnI	CCSGG	1 cut(s)	597
BfaI	CTAG	4 cut(s)	435, 660, 686, 855
BfmI	CTRYAG	1 cut(s)	507
BfrI	CTTAAG	1 cut(s)	167
BglII	AGATCT	2 cut(s)	319, 851
BisI	GCNGC	8 cut(s)	162, 186, 291, 510, 519, 714, 827, 883
BlpI	GCTNAGC	1 cut(s)	788
BlsI	GCNGC	8 cut(s)	163, 187, 292, 511, 520, 715, 828, 884
Bme1390I	CCNGG	3 cut(s)	420, 597, 618
Bme18I	GGWCC	2 cut(s)	416, 599
BmgT120I	GGNCC	2 cut(s)	416, 599
BmiI	GGNNCC	2 cut(s)	600, 876
BmrFI	CCNGG	3 cut(s)	420, 597, 618
BmrI	ACTGGG	1 cut(s)	85
BmsI	GCATC	6 cut(s)	13, 214, 317, 517, 724, 805
BmuI	ACTGGG	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	781, 813
Bpu1102I	GCTNAGC	1 cut(s)	788
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	597
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 96, 486
Bse118I	RCCGGY	1 cut(s)	792
Bse1I	ACTGG	2 cut(s)	91, 866
Bse21I	CCTNAGG	1 cut(s)	639
BseBI	CCWGG	2 cut(s)	420, 618
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	3 cut(s)	60, 96, 486
BseMII	CTCAG	1 cut(s)	779
BseNI	ACTGG	2 cut(s)	91, 866
BseRI	GAGGAG	1 cut(s)	145
BseXI	GCAGC	6 cut(s)	148, 302, 521, 530, 700, 838
BshFI	GGCC	1 cut(s)	796
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	3 cut(s)	54, 596, 793
BslI	CCNNNNNNNGG	3 cut(s)	60, 96, 486
BsnI	GGCC	1 cut(s)	796
Bsp119I	TTCGAA	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp143I	GATC	2 cut(s)	319, 851
Bsp1720I	GCTNAGC	1 cut(s)	788
BspACI	CCGC	5 cut(s)	60, 185, 441, 480, 835
BspANI	GGCC	1 cut(s)	796
BspCNI	CTCAG	1 cut(s)	780
BspLI	GGNNCC	2 cut(s)	600, 876
BspMAI	CTGCAG	1 cut(s)	511
BspT104I	TTCGAA	1 cut(s)	340
BspTI	CTTAAG	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	792
BsrI	ACTGG	2 cut(s)	91, 866
BssAI	RCCGGY	1 cut(s)	792
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	2 cut(s)	319, 851
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	2 cut(s)	420, 618
Bst4CI	ACNGT	3 cut(s)	12, 346, 841
Bst6I	CTCTTC	1 cut(s)	842
BstAFI	CTTAAG	1 cut(s)	167
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	794, 887
BstDEI	CTNAG	2 cut(s)	639, 788
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	322, 854
BstMBI	GATC	2 cut(s)	319, 851
BstMWI	GCNNNNNNNGC	7 cut(s)	161, 515, 518, 527, 713, 793, 798
BstNI	CCWGG	2 cut(s)	420, 618
BstNSI	RCATGY	1 cut(s)	673
BstSCI	CCNGG	3 cut(s)	418, 595, 616
BstSFI	CTRYAG	1 cut(s)	507
BstV1I	GCAGC	6 cut(s)	148, 302, 521, 530, 700, 838
BstX2I	RGATCY	2 cut(s)	319, 851
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstYI	RGATCY	2 cut(s)	319, 851
Bsu36I	CCTNAGG	1 cut(s)	639
BsuRI	GGCC	1 cut(s)	796
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	466
Cac8I	GCNNGC	2 cut(s)	794, 887
Cfr10I	RCCGGY	1 cut(s)	792
Cfr13I	GGNCC	2 cut(s)	416, 599
Csp6I	GTAC	2 cut(s)	369, 667
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	4 cut(s)	104, 500, 622, 670
CviQI	GTAC	2 cut(s)	369, 667
DdeI	CTNAG	2 cut(s)	639, 788
DpnI	GATC	2 cut(s)	321, 853
DpnII	GATC	2 cut(s)	319, 851
DraIII	CACNNNGTG	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	842
EarI	CTCTTC	1 cut(s)	842
EciI	GGCGGA	1 cut(s)	456
Ecl136II	GAGCTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	431
Eco32I	GATATC	2 cut(s)	574, 703
Eco47I	GGWCC	2 cut(s)	416, 599
Eco53kI	GAGCTC	1 cut(s)	429
Eco81I	CCTNAGG	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	418, 616
EcoRV	GATATC	2 cut(s)	574, 703
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	4 cut(s)	107, 503, 625, 673
FatI	CATG	4 cut(s)	103, 499, 621, 669
FauI	CCCGC	2 cut(s)	53, 842
Fnu4HI	GCNGC	8 cut(s)	162, 186, 291, 510, 519, 714, 827, 883
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	431
Fsp4HI	GCNGC	8 cut(s)	162, 186, 291, 510, 519, 714, 827, 883
FspBI	CTAG	4 cut(s)	435, 660, 686, 855
GluI	GCNGC	8 cut(s)	162, 186, 291, 510, 519, 714, 827, 883
HaeIII	GGCC	1 cut(s)	796
HapII	CCGG	3 cut(s)	54, 596, 793
Hin1II	CATG	4 cut(s)	107, 503, 625, 673
HinfI	GANTC	5 cut(s)	5, 149, 242, 359, 579
HpaII	CCGG	3 cut(s)	54, 596, 793
HphI	GGTGA	2 cut(s)	620, 701
Hpy166II	GTNNAC	2 cut(s)	215, 629
Hpy188I	TCNGA	2 cut(s)	578, 733
Hpy188III	TCNNGA	3 cut(s)	79, 97, 855
Hpy8I	GTNNAC	2 cut(s)	215, 629
HpyAV	CCTTC	2 cut(s)	31, 417
HpyCH4III	ACNGT	3 cut(s)	12, 346, 841
HpyCH4V	TGCA	7 cut(s)	227, 308, 464, 509, 635, 737, 863
HpyF10VI	GCNNNNNNNGC	7 cut(s)	161, 515, 518, 527, 713, 793, 798
HpyF3I	CTNAG	2 cut(s)	639, 788
Hsp92II	CATG	4 cut(s)	107, 503, 625, 673
KroI	GCCGGC	1 cut(s)	792
KroNI	GCCGGC	1 cut(s)	794
Kzo9I	GATC	2 cut(s)	319, 851
LmnI	GCTCC	3 cut(s)	426, 598, 755
Lsp1109I	GCAGC	6 cut(s)	148, 302, 521, 530, 700, 838
LweI	GCATC	6 cut(s)	13, 214, 317, 517, 724, 805
MaeI	CTAG	4 cut(s)	435, 660, 686, 855
MaeIII	GTNAC	2 cut(s)	6, 689
MalI	GATC	2 cut(s)	321, 853
MboI	GATC	2 cut(s)	319, 851
MboII	GAAGA	3 cut(s)	233, 329, 859
MflI	RGATCY	2 cut(s)	319, 851
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	5 cut(s)	180, 283, 298, 588, 743
MlyI	GAGTC	3 cut(s)	14, 143, 588
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	8 cut(s)	26, 50, 123, 126, 193, 407, 770, 807
MroNI	GCCGGC	1 cut(s)	792
MseI	TTAA	3 cut(s)	15, 168, 405
MslI	CAYNNNNRTG	2 cut(s)	278, 553
MspA1I	CMGCKG	1 cut(s)	521
MspCI	CTTAAG	1 cut(s)	167
MspI	CCGG	3 cut(s)	54, 596, 793
MspR9I	CCNGG	3 cut(s)	420, 597, 618
MvaI	CCWGG	2 cut(s)	420, 618
MwoI	GCNNNNNNNGC	7 cut(s)	161, 515, 518, 527, 713, 793, 798
NaeI	GCCGGC	1 cut(s)	794
NciI	CCSGG	1 cut(s)	597
NdeII	GATC	2 cut(s)	319, 851
NgoMIV	GCCGGC	1 cut(s)	792
NlaIII	CATG	4 cut(s)	107, 503, 625, 673
NlaIV	GGNNCC	2 cut(s)	600, 876
NmuCI	GTSAC	2 cut(s)	6, 689
NspI	RCATGY	1 cut(s)	673
NspV	TTCGAA	1 cut(s)	340
PdiI	GCCGGC	1 cut(s)	794
PfeI	GAWTC	2 cut(s)	242, 359
PkrI	GCNGC	8 cut(s)	163, 187, 292, 511, 520, 715, 828, 884
PleI	GAGTC	3 cut(s)	13, 143, 587
PpsI	GAGTC	3 cut(s)	13, 143, 587
PpuMI	RGGWCCY	1 cut(s)	599
Psp124BI	GAGCTC	1 cut(s)	431
Psp5II	RGGWCCY	1 cut(s)	599
Psp6I	CCWGG	2 cut(s)	418, 616
PspGI	CCWGG	2 cut(s)	418, 616
PspN4I	GGNNCC	2 cut(s)	600, 876
PspPI	GGNCC	2 cut(s)	416, 599
PspPPI	RGGWCCY	1 cut(s)	599
PstI	CTGCAG	1 cut(s)	511
PsuI	RGATCY	2 cut(s)	319, 851
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	2 cut(s)	370, 668
RsaNI	GTAC	2 cut(s)	369, 667
RseI	CAYNNNNRTG	2 cut(s)	278, 553
SacI	GAGCTC	1 cut(s)	431
SaqAI	TTAA	3 cut(s)	15, 168, 405
SatI	GCNGC	8 cut(s)	162, 186, 291, 510, 519, 714, 827, 883
Sau3AI	GATC	2 cut(s)	319, 851
Sau96I	GGNCC	2 cut(s)	416, 599
SchI	GAGTC	3 cut(s)	14, 143, 588
ScrFI	CCNGG	3 cut(s)	420, 597, 618
SduI	GDGCHC	1 cut(s)	431
SfaNI	GCATC	6 cut(s)	13, 214, 317, 517, 724, 805
SfcI	CTRYAG	1 cut(s)	507
SfuI	TTCGAA	1 cut(s)	340
SinI	GGWCC	2 cut(s)	416, 599
SmiMI	CAYNNNNRTG	2 cut(s)	278, 553
SmlI	CTYRAG	2 cut(s)	167, 395
SmoI	CTYRAG	2 cut(s)	167, 395
Sse9I	AATT	5 cut(s)	180, 283, 298, 588, 743
SsiI	CCGC	5 cut(s)	60, 185, 441, 480, 835
SspI	AATATT	1 cut(s)	450
SspMI	CTAG	4 cut(s)	435, 660, 686, 855
SstI	GAGCTC	1 cut(s)	431
StyD4I	CCNGG	3 cut(s)	418, 595, 616
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	12, 346, 841
TaqI	TCGA	6 cut(s)	78, 86, 198, 245, 340, 525
TasI	AATT	5 cut(s)	180, 283, 298, 588, 743
TatI	WGTACW	1 cut(s)	666
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	242, 359
Tru1I	TTAA	3 cut(s)	15, 168, 405
Tru9I	TTAA	3 cut(s)	15, 168, 405
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	2 cut(s)	6, 689
TseI	GCWGC	7 cut(s)	161, 290, 509, 518, 713, 826, 882
Tsp45I	GTSAC	2 cut(s)	6, 689
TspDTI	ATGAA	2 cut(s)	488, 717
TspRI	CASTG	1 cut(s)	466
Vha464I	CTTAAG	1 cut(s)	167
VpaK11BI	GGWCC	2 cut(s)	416, 599
XapI	RAATTY	3 cut(s)	283, 298, 743
XbaI	TCTAGA	1 cut(s)	854
XceI	RCATGY	1 cut(s)	673
XspI	CTAG	4 cut(s)	435, 660, 686, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.