FvH4_3g12480

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013094
Physical Location & Seq
Forward (+)
7423891 .. 7425421
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12480.t1

Sequence Viewer

Length: 963 bp
ATGGATCTGGCGCCGGAGGAGCTTCAATTTCTGTCTCTCCCAGACATTCTCCGAGAATCGACCTCAATCCCGAAACTGTCCCCGAAAACCTTCTACCTCATAACCCTAACCCTAATCTTCCCTCTCTCCTTCGCCATCCTCGCCCACTCTCTCTTCACCCACCCACTCCTCAACCAGCTCCAAGGCCCATCCACCGACCCGGCCCAGCTCCACCACAAATGGACCCTCCTCCTCCTCTTCCAGTTCTTCTACCTCATCTTCCTCTTCGCCTTCTCTCTCCTCTCCACCGCCGCCGTCGTCTTCACCGCCGCCTCCCTCTACACCTCCAAGCCCGTCTCCTTCTCCAACACCCTCTCCGCCATCCCCAAGGTCTTCAAACGCCTCTTCATCACTTTCCTCTGGGTCTCTCTCCTCATGGTGGCCTACAACCTCCTCTTCCTAGGGTTCCTCGTCCTTCTCATCATCGCCGTCGACTCGCAGAACCCGCTGCTGCTTCTCTTCTCCGGCCTCGCCATTTTCGTGCTCTTCTTGGTTGTGCATGTGTACATTACGGCTCTGTGGCACCTGGCGAGTGTGGTGTCGGTGCTGGAGCCGGTTTATGGGTTCGCGGCCATGAGGAAGAGCTATGAGTTGATGAAGGGGAAGACCGGGATGGCGTTTGTGCTGGTTTTCGGGTACTTGACGAGCTGTGGGATCATCGGATGGGTGTTTGGGACGGTGGTGGTGCACGGCGGGAGCGATTACGGTGTTTTCGTGAGGATTGTGGTGGGAGGGTTCCTTGTGGGGCTTTTGGTGATTGTGAACTTGGTGGGGTTGTTGCTGCAGAGTGTGTTTTACTATGTTTGTAAGAGCTATCATCATCAGGGGATCGATAAGAGTGCTTTGCATGATCATCTGGGAGGGTATCTTGGGGAGTACGTGCCGCTCAAGAGCAGCATTCAGATGGAGAATTTGGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

35.56

Weight (kDa)

7.82

Isoelectric Point (pI)

27.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31130 AT4G19950 AT5G44860 AT5G44860
fragaria_vesca FvH4_3g12480
malus_domestica MD10G1230900.v1.1
prunus_persica Prupe.4G113700_v2.0.a1
pyrus_communis pycom10g19420
rosa_chinensis RchiOBHm_Chr5g0020421
rosa_laevigata RLG00000032529
rosa_multiflora Rmu_sc0000033.1_g000010
rosa_roxburghii Rroxscaffold_1G00057850
rosa_rugosa Rorug05G0059300
rosa_samantha Rh5AG150000 Rh5BG149200 Rh5CG160800 Rh5DG148400
rosa_wichuraiana Rw5G013270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 10, 561
AccBSI CCGCTC 1 cut(s) 925
AccI GTMKAC 1 cut(s) 471
AccII CGCG 1 cut(s) 608
AciI CCGC 9 cut(s) 288, 291, 306, 309, 357, 485, 608, 732, 923
AclWI GGATC 3 cut(s) 12, 701, 875
AcoI YGGCCR 1 cut(s) 609
AcsI RAATTY 1 cut(s) 949
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 3 cut(s) 545, 677, 917
AfiI CCNNNNNNNGG 2 cut(s) 418, 599
AgsI TTSAA 2 cut(s) 26, 376
AjnI CCWGG 1 cut(s) 564
AluBI AGCT 6 cut(s) 22, 178, 208, 624, 687, 852
AluI AGCT 6 cut(s) 22, 178, 208, 624, 687, 852
Alw21I GWGCWC 2 cut(s) 525, 729
Alw26I GTCTC 3 cut(s) 39, 340, 409
Alw44I GTGCAC 1 cut(s) 725
AlwI GGATC 3 cut(s) 12, 701, 875
AoxI GGCC 5 cut(s) 184, 201, 420, 505, 609
ApaLI GTGCAC 1 cut(s) 725
ApeKI GCWGC 4 cut(s) 487, 490, 820, 933
ApoI RAATTY 1 cut(s) 949
Asp700I GAANNNNTTC 1 cut(s) 89
AspA2I CCTAGG 1 cut(s) 439
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 3 cut(s) 185, 202, 222
AsuC2I CCSGG 2 cut(s) 200, 649
AsuHPI GGTGA 3 cut(s) 148, 295, 805
AvaII GGWCC 1 cut(s) 222
AvrII CCTAGG 1 cut(s) 439
BaeGI GKGCMC 1 cut(s) 729
BanI GGYRCC 2 cut(s) 10, 561
BbsI GAAGAC 3 cut(s) 292, 364, 650
Bbv12I GWGCWC 2 cut(s) 525, 729
BbvI GCAGC 4 cut(s) 474, 477, 807, 945
BccI CCATC 6 cut(s) 143, 196, 368, 646, 696, 937
BceAI ACGGC 4 cut(s) 278, 452, 567, 745
BcgI CGANNNNNNTGC 2 cut(s) 860, 894
BciT130I CCWGG 1 cut(s) 566
BclI TGATCA 1 cut(s) 889
BcnI CCSGG 2 cut(s) 200, 649
BcoDI GTCTC 3 cut(s) 39, 340, 409
BfaI CTAG 1 cut(s) 440
BfmI CTRYAG 1 cut(s) 821
BfoI RGCGCY 1 cut(s) 14
BisI GCNGC 8 cut(s) 291, 309, 488, 491, 609, 821, 923, 934
BlnI CCTAGG 1 cut(s) 439
BlsI GCNGC 8 cut(s) 292, 310, 489, 492, 610, 822, 924, 935
Bme1390I CCNGG 3 cut(s) 200, 566, 649
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 3 cut(s) 185, 202, 222
BmiI GGNNCC 6 cut(s) 12, 224, 446, 563, 591, 776
BmrFI CCNGG 3 cut(s) 200, 566, 649
BmsI GCATC 1 cut(s) 946
BpiI GAAGAC 3 cut(s) 292, 364, 650
BpmI CTGGAG 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 911
BpuMI CCSGG 2 cut(s) 200, 649
Bsa29I ATCGAT 1 cut(s) 870
BsaAI YACGTR 1 cut(s) 919
BsaHI GRCGYC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 409
BsaJI CCNNGG 3 cut(s) 181, 366, 439
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 599
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 566
BseCI ATCGAT 1 cut(s) 870
BseDI CCNNGG 3 cut(s) 181, 366, 439
BseGI GGATG 6 cut(s) 135, 188, 360, 657, 707, 961
BseLI CCNNNNNNNGG 2 cut(s) 418, 599
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 8 cut(s) 32, 158, 218, 221, 224, 269, 401, 422
BseSI GKGCMC 1 cut(s) 729
BseXI GCAGC 4 cut(s) 474, 477, 807, 945
BseYI CCCAGC 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 608
BshFI GGCC 5 cut(s) 186, 203, 422, 507, 611
BshNI GGYRCC 2 cut(s) 10, 561
BshVI ATCGAT 1 cut(s) 870
BsiHKAI GWGCWC 2 cut(s) 525, 729
BsiSI CCGG 5 cut(s) 14, 200, 504, 593, 648
BslFI GGGAC 2 cut(s) 64, 727
BslI CCNNNNNNNGG 2 cut(s) 418, 599
BsmAI GTCTC 3 cut(s) 39, 340, 409
BsmBI CGTCTC 1 cut(s) 340
BsmFI GGGAC 2 cut(s) 64, 727
BsmI GAATGC 1 cut(s) 936
BsnI GGCC 5 cut(s) 186, 203, 422, 507, 611
Bso31I GGTCTC 1 cut(s) 409
Bsp1286I GDGCHC 2 cut(s) 525, 729
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 4 cut(s) 4, 693, 867, 889
BspACI CCGC 9 cut(s) 288, 291, 306, 309, 357, 485, 608, 732, 923
BspANI GGCC 5 cut(s) 186, 203, 422, 507, 611
BspDI ATCGAT 1 cut(s) 870
BspFNI CGCG 1 cut(s) 608
BspLI GGNNCC 6 cut(s) 12, 224, 446, 563, 591, 776
BspMAI CTGCAG 1 cut(s) 825
BspPI GGATC 3 cut(s) 12, 701, 875
BspQI GCTCTTC 2 cut(s) 530, 614
BspT107I GGYRCC 2 cut(s) 10, 561
BspTNI GGTCTC 1 cut(s) 409
BsrBI CCGCTC 1 cut(s) 925
BsrFI RCCGGY 1 cut(s) 592
BsrGI TGTACA 1 cut(s) 543
BsrI ACTGG 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 592
BssECI CCNNGG 3 cut(s) 181, 366, 439
BssMI GATC 4 cut(s) 4, 693, 867, 889
BssNI GRCGYC 1 cut(s) 11
BssT1I CCWWGG 3 cut(s) 181, 366, 439
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 3 cut(s) 78, 718, 746
Bst6I CTCTTC 8 cut(s) 158, 242, 269, 389, 440, 503, 530, 614
BstACI GRCGYC 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 543
BstBAI YACGTR 1 cut(s) 919
BstF5I GGATG 6 cut(s) 135, 188, 360, 657, 707, 961
BstFNI CGCG 1 cut(s) 608
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 4 cut(s) 7, 696, 870, 892
BstMAI GTCTC 3 cut(s) 39, 340, 409
BstMBI GATC 4 cut(s) 4, 693, 867, 889
BstMWI GCNNNNNNNGC 3 cut(s) 19, 140, 484
BstNI CCWGG 1 cut(s) 566
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 3 cut(s) 198, 564, 647
BstSFI CTRYAG 1 cut(s) 821
BstSLI GKGCMC 1 cut(s) 729
BstUI CGCG 1 cut(s) 608
BstV1I GCAGC 4 cut(s) 474, 477, 807, 945
BstV2I GAAGAC 3 cut(s) 292, 364, 650
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 870
BsuRI GGCC 5 cut(s) 186, 203, 422, 507, 611
BsuTUI ATCGAT 1 cut(s) 870
BtgZI GCGATG 1 cut(s) 448
BtsCI GGATG 6 cut(s) 135, 188, 360, 657, 707, 961
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 3 cut(s) 185, 202, 222
ClaI ATCGAT 1 cut(s) 870
Csp6I GTAC 3 cut(s) 544, 676, 916
CviAII CATG 4 cut(s) 415, 539, 613, 887
CviQI GTAC 3 cut(s) 544, 676, 916
DinI GGCGCC 1 cut(s) 12
DpnI GATC 4 cut(s) 6, 695, 869, 891
DpnII GATC 4 cut(s) 4, 693, 867, 889
EaeI YGGCCR 1 cut(s) 609
Eam1104I CTCTTC 8 cut(s) 158, 242, 269, 389, 440, 503, 530, 614
EarI CTCTTC 8 cut(s) 158, 242, 269, 389, 440, 503, 530, 614
EciI GGCGGA 1 cut(s) 346
Eco130I CCWWGG 3 cut(s) 181, 366, 439
Eco31I GGTCTC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 564
EcoT14I CCWWGG 3 cut(s) 181, 366, 439
EgeI GGCGCC 1 cut(s) 12
EheI GGCGCC 1 cut(s) 12
ErhI CCWWGG 3 cut(s) 181, 366, 439
Esp3I CGTCTC 1 cut(s) 340
FaeI CATG 4 cut(s) 418, 542, 616, 890
FaiI YATR 8 cut(s) 101, 416, 540, 600, 614, 627, 840, 888
FaqI GGGAC 2 cut(s) 64, 727
FatI CATG 4 cut(s) 414, 538, 612, 886
FauI CCCGC 2 cut(s) 492, 725
FbaI TGATCA 1 cut(s) 889
FblI GTMKAC 1 cut(s) 471
Fnu4HI GCNGC 8 cut(s) 291, 309, 488, 491, 609, 821, 923, 934
FokI GGATG 5 cut(s) 122, 175, 347, 664, 714
Fsp4HI GCNGC 8 cut(s) 291, 309, 488, 491, 609, 821, 923, 934
FspBI CTAG 1 cut(s) 440
GlaI GCGC 1 cut(s) 12
GluI GCNGC 8 cut(s) 291, 309, 488, 491, 609, 821, 923, 934
GsaI CCCAGC 1 cut(s) 208
GsuI CTGGAG 1 cut(s) 608
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 5 cut(s) 186, 203, 422, 507, 611
HapII CCGG 5 cut(s) 14, 200, 504, 593, 648
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 4 cut(s) 418, 542, 616, 890
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 2 cut(s) 56, 473
HpaII CCGG 5 cut(s) 14, 200, 504, 593, 648
HphI GGTGA 3 cut(s) 148, 295, 805
Hpy166II GTNNAC 4 cut(s) 472, 544, 727, 802
Hpy188I TCNGA 3 cut(s) 53, 701, 942
Hpy188III TCNNGA 3 cut(s) 70, 754, 928
Hpy8I GTNNAC 4 cut(s) 472, 544, 727, 802
Hpy99I CGWCG 2 cut(s) 299, 473
HpyAV CCTTC 6 cut(s) 100, 139, 280, 349, 464, 631
HpyCH4III ACNGT 3 cut(s) 78, 718, 746
HpyCH4IV ACGT 1 cut(s) 918
HpyCH4V TGCA 4 cut(s) 538, 727, 823, 886
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 140, 484
HpySE526I ACGT 1 cut(s) 918
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 4 cut(s) 418, 542, 616, 890
HspAI GCGC 1 cut(s) 11
KasI GGCGCC 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 889
Kzo9I GATC 4 cut(s) 4, 693, 867, 889
LguI GCTCTTC 2 cut(s) 530, 614
LmnI GCTCC 5 cut(s) 19, 183, 213, 589, 735
Lsp1109I GCAGC 4 cut(s) 474, 477, 807, 945
LweI GCATC 1 cut(s) 946
MaeI CTAG 1 cut(s) 440
MaeII ACGT 1 cut(s) 918
MalI GATC 4 cut(s) 6, 695, 869, 891
MbiI CCGCTC 1 cut(s) 925
MboI GATC 4 cut(s) 4, 693, 867, 889
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 525, 729
MluCI AATT 2 cut(s) 26, 949
Mly113I GGCGCC 1 cut(s) 11
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 369
MroXI GAANNNNTTC 1 cut(s) 89
MslI CAYNNNNRTG 2 cut(s) 518, 941
MspA1I CMGCKG 1 cut(s) 487
MspI CCGG 5 cut(s) 14, 200, 504, 593, 648
MspR9I CCNGG 3 cut(s) 200, 566, 649
Mva1269I GAATGC 1 cut(s) 936
MvaI CCWGG 1 cut(s) 566
MvnI CGCG 1 cut(s) 608
MwoI GCNNNNNNNGC 3 cut(s) 19, 140, 484
NarI GGCGCC 1 cut(s) 11
NciI CCSGG 2 cut(s) 200, 649
NdeII GATC 4 cut(s) 4, 693, 867, 889
NlaIII CATG 4 cut(s) 418, 542, 616, 890
NlaIV GGNNCC 6 cut(s) 12, 224, 446, 563, 591, 776
NspI RCATGY 1 cut(s) 542
PciSI GCTCTTC 2 cut(s) 530, 614
PcsI WCGNNNNNNNCGW 3 cut(s) 516, 735, 750
PctI GAATGC 1 cut(s) 936
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 8 cut(s) 292, 310, 489, 492, 610, 822, 924, 935
PleI GAGTC 1 cut(s) 467
PluTI GGCGCC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 467
Ppu21I YACGTR 1 cut(s) 919
Psp6I CCWGG 1 cut(s) 564
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 6 cut(s) 12, 224, 446, 563, 591, 776
PspPI GGNCC 3 cut(s) 185, 202, 222
PstI CTGCAG 1 cut(s) 825
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 3 cut(s) 545, 677, 917
RsaNI GTAC 3 cut(s) 544, 676, 916
RseI CAYNNNNRTG 2 cut(s) 518, 941
SalI GTCGAC 1 cut(s) 470
SapI GCTCTTC 2 cut(s) 530, 614
SatI GCNGC 8 cut(s) 291, 309, 488, 491, 609, 821, 923, 934
Sau3AI GATC 4 cut(s) 4, 693, 867, 889
Sau96I GGNCC 3 cut(s) 185, 202, 222
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 3 cut(s) 200, 566, 649
SduI GDGCHC 2 cut(s) 525, 729
SfaNI GCATC 1 cut(s) 946
SfcI CTRYAG 1 cut(s) 821
SfoI GGCGCC 1 cut(s) 12
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 2 cut(s) 518, 941
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
Sse9I AATT 2 cut(s) 26, 949
SsiI CCGC 9 cut(s) 288, 291, 306, 309, 357, 485, 608, 732, 923
SspDI GGCGCC 1 cut(s) 10
SspMI CTAG 1 cut(s) 440
StyD4I CCNGG 3 cut(s) 198, 564, 647
StyI CCWWGG 3 cut(s) 181, 366, 439
TaaI ACNGT 3 cut(s) 78, 718, 746
TaiI ACGT 1 cut(s) 921
TaqI TCGA 3 cut(s) 59, 471, 870
TasI AATT 2 cut(s) 26, 949
TatI WGTACW 1 cut(s) 543
TauI GCSGC 4 cut(s) 293, 311, 611, 925
TfiI GAWTC 1 cut(s) 56
TseI GCWGC 4 cut(s) 487, 490, 820, 933
TspDTI ATGAA 2 cut(s) 376, 650
VneI GTGCAC 1 cut(s) 725
VpaK11BI GGWCC 1 cut(s) 222
XapI RAATTY 1 cut(s) 949
XceI RCATGY 1 cut(s) 542
XmaJI CCTAGG 1 cut(s) 439
XmiI GTMKAC 1 cut(s) 471
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.