Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013478

Physical Location & Seq

Genomic Coordinates Forward (+)

18396254 .. 18398138

Gene Structure 1885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGAACCCTATCTCTCTCATCTTCTCTCAAACCTTCACTCGTTTCATCAAGACTCAATTCATCTTCCTCCGCATCTTCTTCTTCGTTTCCTAAACCAAACAATCTCTACCTCAAACCCACCAAACTCATTTCACCACCTCTCAGAACAACTTCACCATCGCCATTGAGATTCGCCAATGCTTCAATCGAGATGTCGCAGACACAGGAATCAGCTATTCGCGGAGCTGAATCTGACGTCATGGGTCTTCTCCTTAGGGAACGAATCGTCTTTCTCGGTAGTAGTATCGACGATTTCGTCGCTGATGCTATTATGAGTCAGTTGCTTCTCTTAGATGCTAAAGATCCAAAGAAAGATATCAAACTCTTTATCAATTCTCCTGGTGGTTCTCTCAGTGCAACCATGGCTATATACGATGTGGTTCAGCTTGTGAGAGCTGATGTTTCGACGATTGCTCTTGGCATTGCTGCATCAACAGCTTCGATTATTCTTGGTGCGGGAACTAAAGGCAAGCGCTTTGCTATGCCCAACACGAGGATAATGATTCATCAACCTCTTGGAGGTGCAAGCGGTCAAGCTATAGATGTTGAGATTCAAGCTAAGGAAGTTATGCATAACAAGAACAATGTCACCAGCATTATCGCGGGATGTACTAGTCGATCGTTTGAGCAGGTTCTGAAAGATATTGATAGGGACCGGTACATGTCTCCAATTGAAGCAGTTGAGTATGGTTTAATTGATGGAGTTATTGATGGAGACAGCATTATTCCTCTTGAACCTGTTCCTGATAGAGTGAAACCGAGAGTAAACTACGAGGAGATTAGCAAGGATCCGATGAAATTCTTGACTCCCGAGATACCTGATGATGAGATCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0040034 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0050789 GO:0050793 GO:0055035 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

292

Amino Acids

31.5

Weight (kDa)

5.37

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	78 - 251	1e-72	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45390
fragaria_vesca	FvH4_3g11210 FvH4_3g11210
malus_domestica	MD05G1265700.v1.1
prunus_persica	Prupe.4G099800_v2.0.a1
pyrus_communis	pycom05g24980 pycom10g20380
rosa_chinensis	RchiOBHm_Chr5g0018161
rosa_laevigata	RLG00000032342
rosa_multiflora	Rmu_sc0006594.1_g000017 Rmu_sc0013020.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059490
rosa_rugosa	Rorug05G0040800
rosa_samantha	Rh5AG133700 Rh5BG132200 Rh5CG144400 Rh5DG134100
rosa_wichuraiana	Rw5G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
AatII	GACGTC	1 cut(s)	240
Acc36I	ACCTGC	1 cut(s)	661
AccII	CGCG	2 cut(s)	222, 644
AciI	CCGC	5 cut(s)	72, 222, 497, 570, 644
AclWI	GGATC	3 cut(s)	338, 824, 837
AcsI	RAATTY	1 cut(s)	839
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	2 cut(s)	652, 701
AfeI	AGCGCT	1 cut(s)	515
AfiI	CCNNNNNNNGG	2 cut(s)	534, 560
AflIII	ACRYGT	1 cut(s)	702
AgeI	ACCGGT	1 cut(s)	696
AgsI	TTSAA	4 cut(s)	186, 596, 716, 776
AhlI	ACTAGT	1 cut(s)	653
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	7 cut(s)	215, 227, 427, 437, 479, 578, 599
AluI	AGCT	7 cut(s)	215, 227, 427, 437, 479, 578, 599
Alw26I	GTCTC	2 cut(s)	711, 750
AlwI	GGATC	3 cut(s)	338, 824, 837
AlwNI	CAGNNNCTG	1 cut(s)	676
Ama87I	CYCGRG	1 cut(s)	851
Aor51HI	AGCGCT	1 cut(s)	515
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	839
AsiGI	ACCGGT	1 cut(s)	696
Asp700I	GAANNNNTTC	2 cut(s)	151, 780
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	694
AsuHPI	GGTGA	3 cut(s)	126, 147, 622
AvaI	CYCGRG	1 cut(s)	851
AvaII	GGWCC	1 cut(s)	694
AxyI	CCTNAGG	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	829
BauI	CACGAG	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	3 cut(s)	166, 734, 746
BciT130I	CCWGG	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	711, 750
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	1 cut(s)	579
BfoI	RGCGCY	1 cut(s)	517
BfuAI	ACCTGC	1 cut(s)	661
BglII	AGATCT	1 cut(s)	870
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	1 cut(s)	694
BmeT110I	CYCGRG	1 cut(s)	851
BmgT120I	GGNCC	1 cut(s)	694
BmiI	GGNNCC	3 cut(s)	7, 695, 831
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	4 cut(s)	83, 295, 325, 479
BpiI	GAAGAC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	600
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	402
BsaWI	WCCGGW	1 cut(s)	696
Bsc4I	CCNNNNNNNGG	2 cut(s)	534, 560
Bse118I	RCCGGY	1 cut(s)	696
Bse21I	CCTNAGG	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	1 cut(s)	653
BseLI	CCNNNNNNNGG	2 cut(s)	534, 560
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	2 cut(s)	157, 406
BseRI	GAGGAG	1 cut(s)	830
BseXI	GCAGC	1 cut(s)	454
Bsh1236I	CGCG	2 cut(s)	222, 644
Bsh1285I	CGRYCG	1 cut(s)	662
BshTI	ACCGGT	1 cut(s)	696
BsiEI	CGRYCG	1 cut(s)	662
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	1 cut(s)	697
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	2 cut(s)	534, 560
BsmAI	GTCTC	2 cut(s)	711, 750
BsmFI	GGGAC	1 cut(s)	707
BsoBI	CYCGRG	1 cut(s)	851
Bsp143I	GATC	4 cut(s)	343, 659, 829, 870
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	5 cut(s)	72, 222, 497, 570, 644
BspCNI	CTCAG	2 cut(s)	156, 405
BspFNI	CGCG	2 cut(s)	222, 644
BspLI	GGNNCC	3 cut(s)	7, 695, 831
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	3 cut(s)	338, 824, 837
BsrDI	GCAATG	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	696
BssAI	RCCGGY	1 cut(s)	696
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	4 cut(s)	343, 659, 829, 870
BssNI	GRCGYC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	532
BssT1I	CCWWGG	1 cut(s)	402
Bst2BI	CACGAG	1 cut(s)	532
Bst2UI	CCWGG	1 cut(s)	381
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	512, 568
BstDEI	CTNAG	5 cut(s)	143, 254, 331, 392, 600
BstDSI	CCRYGG	1 cut(s)	402
BstENI	CCTNNNNNAGG	1 cut(s)	558
BstF5I	GGATG	1 cut(s)	653
BstFNI	CGCG	2 cut(s)	222, 644
BstH2I	RGCGCY	1 cut(s)	517
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	4 cut(s)	346, 662, 832, 873
BstMAI	GTCTC	2 cut(s)	711, 750
BstMBI	GATC	4 cut(s)	343, 659, 829, 870
BstMCI	CGRYCG	1 cut(s)	662
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 476
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	706
BstSCI	CCNGG	1 cut(s)	379
BstSFI	CTRYAG	1 cut(s)	579
BstUI	CGCG	2 cut(s)	222, 644
BstV1I	GCAGC	1 cut(s)	454
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	3 cut(s)	343, 829, 870
BstYI	RGATCY	3 cut(s)	343, 829, 870
Bsu36I	CCTNAGG	1 cut(s)	254
BtgI	CCRYGG	1 cut(s)	402
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	653
BtsIMutI	CAGTG	1 cut(s)	400
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	2 cut(s)	512, 568
CaiI	CAGNNNCTG	1 cut(s)	676
CfoI	GCGC	1 cut(s)	516
Cfr10I	RCCGGY	1 cut(s)	696
Cfr13I	GGNCC	1 cut(s)	694
Csp6I	GTAC	2 cut(s)	651, 700
CspAI	ACCGGT	1 cut(s)	696
CviAII	CATG	3 cut(s)	241, 403, 703
CviJI	RGCY	8 cut(s)	215, 227, 407, 427, 437, 479, 578, 599
CviKI_1	RGCY	8 cut(s)	215, 227, 407, 427, 437, 479, 578, 599
CviQI	GTAC	2 cut(s)	651, 700
DdeI	CTNAG	5 cut(s)	143, 254, 331, 392, 600
DpnI	GATC	4 cut(s)	345, 661, 831, 872
DpnII	GATC	4 cut(s)	343, 659, 829, 870
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	402
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	694
Eco47III	AGCGCT	1 cut(s)	515
Eco81I	CCTNAGG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	851
EcoNI	CCTNNNNNAGG	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	379
EcoRV	GATATC	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	402
EcoT22I	ATGCAT	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	3 cut(s)	244, 406, 706
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	3 cut(s)	240, 402, 702
FauI	CCCGC	2 cut(s)	490, 637
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	1 cut(s)	660
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	1 cut(s)	468
HaeII	RGCGCY	1 cut(s)	517
HapII	CCGG	1 cut(s)	697
HhaI	GCGC	1 cut(s)	516
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	244, 406, 706
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HinfI	GANTC	9 cut(s)	54, 171, 209, 230, 264, 316, 544, 592, 847
HpaII	CCGG	1 cut(s)	697
HphI	GGTGA	3 cut(s)	126, 147, 622
Hpy166II	GTNNAC	1 cut(s)	808
Hpy188I	TCNGA	4 cut(s)	146, 235, 678, 834
Hpy188III	TCNNGA	6 cut(s)	51, 190, 773, 785, 844, 851
Hpy8I	GTNNAC	1 cut(s)	808
Hpy99I	CGWCG	3 cut(s)	293, 302, 451
HpyAV	CCTTC	1 cut(s)	45
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	4 cut(s)	398, 470, 566, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 476
HpyF3I	CTNAG	5 cut(s)	143, 254, 331, 392, 600
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	244, 406, 706
HspAI	GCGC	1 cut(s)	514
Kzo9I	GATC	4 cut(s)	343, 659, 829, 870
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	9 cut(s)	191, 366, 393, 646, 656, 710, 792, 798, 873
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	4 cut(s)	83, 295, 325, 479
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	4 cut(s)	345, 661, 831, 872
MboI	GATC	4 cut(s)	343, 659, 829, 870
MboII	GAAGA	6 cut(s)	15, 57, 69, 72, 75, 239
MfeI	CAATTG	1 cut(s)	711
MflI	RGATCY	3 cut(s)	343, 829, 870
MluCI	AATT	5 cut(s)	58, 373, 711, 735, 839
MlyI	GAGTC	3 cut(s)	48, 325, 841
MnlI	CCTC	8 cut(s)	79, 122, 150, 528, 554, 564, 780, 808
Mph1103I	ATGCAT	1 cut(s)	615
MroXI	GAANNNNTTC	2 cut(s)	151, 780
MseI	TTAA	1 cut(s)	734
MspI	CCGG	1 cut(s)	697
MspR9I	CCNGG	1 cut(s)	381
MunI	CAATTG	1 cut(s)	711
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	2 cut(s)	222, 644
MwoI	GCNNNNNNNGC	2 cut(s)	404, 476
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	4 cut(s)	343, 659, 829, 870
NlaIII	CATG	3 cut(s)	244, 406, 706
NlaIV	GGNNCC	3 cut(s)	7, 695, 831
NmuCI	GTSAC	1 cut(s)	628
NsiI	ATGCAT	1 cut(s)	615
NspI	RCATGY	1 cut(s)	706
PciI	ACATGT	1 cut(s)	702
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PdmI	GAANNNNTTC	2 cut(s)	151, 780
PfeI	GAWTC	6 cut(s)	171, 209, 230, 264, 544, 592
PinAI	ACCGGT	1 cut(s)	696
PkrI	GCNGC	1 cut(s)	469
Ple19I	CGATCG	1 cut(s)	662
PleI	GAGTC	3 cut(s)	48, 324, 841
PpsI	GAGTC	3 cut(s)	48, 324, 841
PscI	ACATGT	1 cut(s)	702
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	3 cut(s)	7, 695, 831
PspPI	GGNCC	1 cut(s)	694
PstNI	CAGNNNCTG	1 cut(s)	676
PsuI	RGATCY	3 cut(s)	343, 829, 870
PvuI	CGATCG	1 cut(s)	662
RsaI	GTAC	2 cut(s)	652, 701
RsaNI	GTAC	2 cut(s)	651, 700
SaqAI	TTAA	1 cut(s)	734
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	4 cut(s)	343, 659, 829, 870
Sau96I	GGNCC	1 cut(s)	694
SchI	GAGTC	3 cut(s)	48, 325, 841
ScrFI	CCNGG	1 cut(s)	381
SfaNI	GCATC	4 cut(s)	83, 295, 325, 479
SfcI	CTRYAG	1 cut(s)	579
SinI	GGWCC	1 cut(s)	694
SpeI	ACTAGT	1 cut(s)	653
Sse9I	AATT	5 cut(s)	58, 373, 711, 735, 839
SsiI	CCGC	5 cut(s)	72, 222, 497, 570, 644
SspMI	CTAG	1 cut(s)	654
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	1 cut(s)	402
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	5 cut(s)	189, 288, 446, 482, 658
TasI	AATT	5 cut(s)	58, 373, 711, 735, 839
TatI	WGTACW	1 cut(s)	650
TfiI	GAWTC	6 cut(s)	171, 209, 230, 264, 544, 592
Tru1I	TTAA	1 cut(s)	734
Tru9I	TTAA	1 cut(s)	734
TscAI	CASTG	1 cut(s)	400
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	4 cut(s)	36, 51, 536, 851
TspRI	CASTG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	694
XagI	CCTNNNNNAGG	1 cut(s)	558
XapI	RAATTY	1 cut(s)	839
XceI	RCATGY	1 cut(s)	706
XmnI	GAANNNNTTC	2 cut(s)	151, 780
XspI	CTAG	1 cut(s)	654
ZraI	GACGTC	1 cut(s)	238
Zsp2I	ATGCAT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.