Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013478

Physical Location & Seq

Genomic Coordinates Forward (+)

26431091 .. 26433545

Gene Structure 2455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGACGTTCTCTCAATCTCATCCCCTACGTTCCTCCCCACCCCAACCTCCAAGCTCTCTCACTCCTCCCGCCCCAAACCCACCTCCTACTTCCCCACTTCCTCTCCCAAAACCCCCTCAATCAAATCCCTTTCCCTCCAAACACCAAAACCCACCTTCGCCACCAGGTCCCAGGCGCTCGACGGCTCGCTCCTGATTTCCTCCGCCCCTCAAACGCCGGCCACCGCCATGAGAGGCGCCGAGGGCGACGCCATGGGGCTTTTGCTCAGGGAGAGGATTGTTTTCTTGGGTAGTAGCATTGATGACTTTGTGGCCGACGCTATTATTAGCCAGCTGCTTTTGTTGGATGCCCAGGATTCTAAGAAGGATATCAAGCTCTTTATTAACTCCACCGGCGGCTCTCTCAGTGCTACAATGGCTATCTATGACGTCGTTCAGCTTGTGAGGGCTGATGTCTCCACAGTTGCACTTGGCATTGCAGCATCAACAGCTTCCATAATCCTTGGCGGTGGCACCAAAGGCAAGCGTTTTGCGATGCCTAATACACGGATCATGATTCATCAACCTCTTGGAGGTGCTAGTGGCCAGGCAATAGATGTGGAAATTCAAGCCCAAGAAGTGATGCATAACAAAAACAATGTCACACAAATTCTTTCAAATTCCACAGGCCGTTCATTTGAGCAAGTCCAAAAGGATATTGACAGGGATCGATGTATGTCCCCCATAGAAGCAGTTGAATATGGAATAATCGATGGAGTTATCGACGGAGATAGCATTATTCCTCTGGTGCCTGTCCCAGACAAGGTGAAGCCGAGAATGAGTTACGAGGAAATTAGTAAAGATCCAAGAAAATTTTTGACACCAGACGTCCCCGATGACGAGATATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0040034 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0050789 GO:0050793 GO:0055035 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

297

Amino Acids

31.75

Weight (kDa)

5.47

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45390
fragaria_vesca	FvH4_3g11210 FvH4_3g11210
malus_domestica	MD05G1265700.v1.1
prunus_persica	Prupe.4G099800_v2.0.a1
pyrus_communis	pycom05g24980 pycom10g20380
rosa_chinensis	RchiOBHm_Chr5g0018161
rosa_laevigata	RLG00000032342
rosa_multiflora	Rmu_sc0006594.1_g000017 Rmu_sc0013020.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059490
rosa_rugosa	Rorug05G0040800
rosa_samantha	Rh5AG133700 Rh5BG132200 Rh5CG144400 Rh5DG134100
rosa_wichuraiana	Rw5G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	432, 870
AccB1I	GGYRCC	3 cut(s)	236, 512, 787
AciI	CCGC	5 cut(s)	70, 204, 225, 396, 507
AclWI	GGATC	3 cut(s)	557, 714, 836
AcoI	YGGCCR	3 cut(s)	219, 312, 583
AcsI	RAATTY	4 cut(s)	603, 648, 658, 851
AcyI	GRCGYC	4 cut(s)	237, 249, 429, 867
AfiI	CCNNNNNNNGG	2 cut(s)	572, 802
AgsI	TTSAA	3 cut(s)	608, 657, 737
AjnI	CCWGG	4 cut(s)	164, 171, 351, 585
AluBI	AGCT	5 cut(s)	55, 334, 376, 439, 491
AluI	AGCT	5 cut(s)	55, 334, 376, 439, 491
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	3 cut(s)	557, 714, 836
AoxI	GGCC	4 cut(s)	219, 312, 583, 667
ApeKI	GCWGC	2 cut(s)	334, 479
ApoI	RAATTY	4 cut(s)	603, 648, 658, 851
ArsI	GACNNNNNNTTYG	2 cut(s)	624, 656
AspLEI	GCGC	2 cut(s)	178, 239
AspS9I	GGNCC	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	817
AvaII	GGWCC	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	585
BanI	GGYRCC	3 cut(s)	236, 512, 787
BbvI	GCAGC	2 cut(s)	321, 491
BccI	CCATC	1 cut(s)	746
BceAI	ACGGC	2 cut(s)	199, 654
BciT130I	CCWGG	4 cut(s)	166, 173, 353, 587
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	2 cut(s)	579, 889
BfoI	RGCGCY	2 cut(s)	179, 240
BisI	GCNGC	3 cut(s)	335, 397, 480
BlsI	GCNGC	3 cut(s)	336, 398, 481
Bme1390I	CCNGG	4 cut(s)	166, 173, 353, 587
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	4 cut(s)	170, 238, 514, 789
BmrFI	CCNGG	4 cut(s)	166, 173, 353, 587
BmsI	GCATC	4 cut(s)	337, 491, 525, 612
Bpu10I	CCTNAGC	1 cut(s)	266
Bsa29I	ATCGAT	2 cut(s)	709, 750
BsaHI	GRCGYC	4 cut(s)	237, 249, 429, 867
BsaJI	CCNNGG	5 cut(s)	171, 240, 252, 351, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 802
Bse118I	RCCGGY	2 cut(s)	217, 392
Bse3DI	GCAATG	1 cut(s)	474
BseBI	CCWGG	4 cut(s)	166, 173, 353, 587
BseCI	ATCGAT	2 cut(s)	709, 750
BseDI	CCNNGG	5 cut(s)	171, 240, 252, 351, 502
BseGI	GGATG	2 cut(s)	20, 352
BseLI	CCNNNNNNNGG	2 cut(s)	572, 802
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	2 cut(s)	280, 418
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	321, 491
BshFI	GGCC	4 cut(s)	221, 314, 585, 669
BshNI	GGYRCC	3 cut(s)	236, 512, 787
BshVI	ATCGAT	2 cut(s)	709, 750
BsiSI	CCGG	2 cut(s)	218, 393
BslFI	GGGAC	4 cut(s)	154, 703, 779, 854
BslI	CCNNNNNNNGG	2 cut(s)	572, 802
BsmAI	GTCTC	1 cut(s)	460
BsmFI	GGGAC	4 cut(s)	154, 703, 779, 854
BsnI	GGCC	4 cut(s)	221, 314, 585, 669
Bsp143I	GATC	3 cut(s)	549, 706, 841
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	5 cut(s)	70, 204, 225, 396, 507
BspANI	GGCC	4 cut(s)	221, 314, 585, 669
BspCNI	CTCAG	2 cut(s)	279, 417
BspDI	ATCGAT	2 cut(s)	709, 750
BspHI	TCATGA	1 cut(s)	552
BspLI	GGNNCC	4 cut(s)	170, 238, 514, 789
BspPI	GGATC	3 cut(s)	557, 714, 836
BspT107I	GGYRCC	3 cut(s)	236, 512, 787
BsrDI	GCAATG	1 cut(s)	474
BsrFI	RCCGGY	2 cut(s)	217, 392
BssAI	RCCGGY	2 cut(s)	217, 392
BssECI	CCNNGG	5 cut(s)	171, 240, 252, 351, 502
BssMI	GATC	3 cut(s)	549, 706, 841
BssNI	GRCGYC	4 cut(s)	237, 249, 429, 867
BssT1I	CCWWGG	2 cut(s)	252, 502
Bst2UI	CCWGG	4 cut(s)	166, 173, 353, 587
Bst4CI	ACNGT	1 cut(s)	463
BstACI	GRCGYC	4 cut(s)	237, 249, 429, 867
BstC8I	GCNNGC	4 cut(s)	188, 219, 332, 524
BstDEI	CTNAG	3 cut(s)	266, 360, 404
BstDSI	CCRYGG	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	570
BstF5I	GGATG	2 cut(s)	20, 352
BstH2I	RGCGCY	2 cut(s)	179, 240
BstHHI	GCGC	2 cut(s)	178, 239
BstKTI	GATC	3 cut(s)	552, 709, 844
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	3 cut(s)	549, 706, 841
BstMWI	GCNNNNNNNGC	4 cut(s)	243, 416, 488, 519
BstNI	CCWGG	4 cut(s)	166, 173, 353, 587
BstSCI	CCNGG	4 cut(s)	164, 171, 351, 585
BstV1I	GCAGC	2 cut(s)	321, 491
BstX2I	RGATCY	1 cut(s)	841
BstYI	RGATCY	1 cut(s)	841
Bsu15I	ATCGAT	2 cut(s)	709, 750
BsuRI	GGCC	4 cut(s)	221, 314, 585, 669
BsuTUI	ATCGAT	2 cut(s)	709, 750
BtgI	CCRYGG	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	548
BtsCI	GGATG	2 cut(s)	20, 352
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	4 cut(s)	188, 219, 332, 524
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	2 cut(s)	178, 239
Cfr10I	RCCGGY	2 cut(s)	217, 392
Cfr13I	GGNCC	1 cut(s)	168
ClaI	ATCGAT	2 cut(s)	709, 750
CseI	GACGC	2 cut(s)	257, 326
CsiI	ACCWGGT	1 cut(s)	164
CspCI	CAANNNNNGTGG	2 cut(s)	579, 614
CviAII	CATG	3 cut(s)	229, 253, 553
DdeI	CTNAG	3 cut(s)	266, 360, 404
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	3 cut(s)	551, 708, 843
DpnII	GATC	3 cut(s)	549, 706, 841
EaeI	YGGCCR	3 cut(s)	219, 312, 583
EciI	GGCGGA	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	252, 502
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	168
EcoNI	CCTNNNNNAGG	1 cut(s)	570
EcoO109I	RGGNCCY	1 cut(s)	168
EcoRII	CCWGG	4 cut(s)	164, 171, 351, 585
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	2 cut(s)	252, 502
EcoT22I	ATGCAT	1 cut(s)	627
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
ErhI	CCWWGG	2 cut(s)	252, 502
FaeI	CATG	3 cut(s)	232, 256, 556
FaqI	GGGAC	4 cut(s)	154, 703, 779, 854
FatI	CATG	3 cut(s)	228, 252, 552
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	3 cut(s)	335, 397, 480
FokI	GGATG	2 cut(s)	7, 359
Fsp4HI	GCNGC	3 cut(s)	335, 397, 480
FspBI	CTAG	2 cut(s)	579, 889
GlaI	GCGC	2 cut(s)	177, 238
GluI	GCNGC	3 cut(s)	335, 397, 480
HaeII	RGCGCY	2 cut(s)	179, 240
HaeIII	GGCC	4 cut(s)	221, 314, 585, 669
HapII	CCGG	2 cut(s)	218, 393
HgaI	GACGC	2 cut(s)	257, 326
HhaI	GCGC	2 cut(s)	178, 239
Hin1I	GRCGYC	4 cut(s)	237, 249, 429, 867
Hin1II	CATG	3 cut(s)	232, 256, 556
Hin6I	GCGC	2 cut(s)	176, 237
HinP1I	GCGC	2 cut(s)	176, 237
HinfI	GANTC	2 cut(s)	356, 556
HpaII	CCGG	2 cut(s)	218, 393
HphI	GGTGA	1 cut(s)	817
Hpy188III	TCNNGA	2 cut(s)	193, 553
Hpy99I	CGWCG	5 cut(s)	185, 251, 320, 434, 767
HpyAV	CCTTC	2 cut(s)	166, 358
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	4 cut(s)	6, 29, 429, 867
HpyCH4V	TGCA	3 cut(s)	467, 479, 625
HpyF10VI	GCNNNNNNNGC	4 cut(s)	243, 416, 488, 519
HpyF3I	CTNAG	3 cut(s)	266, 360, 404
HpySE526I	ACGT	4 cut(s)	6, 29, 429, 867
Hsp92I	GRCGYC	4 cut(s)	237, 249, 429, 867
Hsp92II	CATG	3 cut(s)	232, 256, 556
HspAI	GCGC	2 cut(s)	176, 237
KasI	GGCGCC	1 cut(s)	236
KroI	GCCGGC	1 cut(s)	217
KroNI	GCCGGC	1 cut(s)	219
Kzo9I	GATC	3 cut(s)	549, 706, 841
LmnI	GCTCC	1 cut(s)	195
Lsp1109I	GCAGC	2 cut(s)	321, 491
LweI	GCATC	4 cut(s)	337, 491, 525, 612
MabI	ACCWGGT	1 cut(s)	164
MaeI	CTAG	2 cut(s)	579, 889
MaeII	ACGT	4 cut(s)	6, 29, 429, 867
MaeIII	GTNAC	2 cut(s)	640, 821
MalI	GATC	3 cut(s)	551, 708, 843
MboI	GATC	3 cut(s)	549, 706, 841
MflI	RGATCY	1 cut(s)	841
MlsI	TGGCCA	1 cut(s)	585
MluCI	AATT	5 cut(s)	603, 648, 658, 831, 851
MluNI	TGGCCA	1 cut(s)	585
Mly113I	GGCGCC	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	324
Mox20I	TGGCCA	1 cut(s)	585
Mph1103I	ATGCAT	1 cut(s)	627
MroNI	GCCGGC	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	585
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	585
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	2 cut(s)	218, 393
MspR9I	CCNGG	4 cut(s)	166, 173, 353, 587
MvaI	CCWGG	4 cut(s)	166, 173, 353, 587
MwoI	GCNNNNNNNGC	4 cut(s)	243, 416, 488, 519
NaeI	GCCGGC	1 cut(s)	219
NarI	GGCGCC	1 cut(s)	237
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	3 cut(s)	549, 706, 841
NgoMIV	GCCGGC	1 cut(s)	217
NlaIII	CATG	3 cut(s)	232, 256, 556
NlaIV	GGNNCC	4 cut(s)	170, 238, 514, 789
NmeAIII	GCCGAG	2 cut(s)	265, 837
NmuCI	GTSAC	1 cut(s)	640
NsiI	ATGCAT	1 cut(s)	627
PagI	TCATGA	1 cut(s)	552
PdiI	GCCGGC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	356, 556
PkrI	GCNGC	3 cut(s)	336, 398, 481
PluTI	GGCGCC	1 cut(s)	240
PpuMI	RGGWCCY	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	168
Psp6I	CCWGG	4 cut(s)	164, 171, 351, 585
PspGI	CCWGG	4 cut(s)	164, 171, 351, 585
PspN4I	GGNNCC	4 cut(s)	170, 238, 514, 789
PspPI	GGNCC	1 cut(s)	168
PspPPI	RGGWCCY	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	841
PvuII	CAGCTG	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	3 cut(s)	335, 397, 480
Sau3AI	GATC	3 cut(s)	549, 706, 841
Sau96I	GGNCC	1 cut(s)	168
ScrFI	CCNGG	4 cut(s)	166, 173, 353, 587
SexAI	ACCWGGT	1 cut(s)	164
SfaNI	GCATC	4 cut(s)	337, 491, 525, 612
SfoI	GGCGCC	1 cut(s)	238
SgrAI	CRCCGGYG	1 cut(s)	392
SinI	GGWCC	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	5 cut(s)	603, 648, 658, 831, 851
SsiI	CCGC	5 cut(s)	70, 204, 225, 396, 507
SspDI	GGCGCC	1 cut(s)	236
SspMI	CTAG	2 cut(s)	579, 889
StyD4I	CCNGG	4 cut(s)	164, 171, 351, 585
StyI	CCWWGG	2 cut(s)	252, 502
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	4 cut(s)	9, 32, 432, 870
TaqI	TCGA	4 cut(s)	180, 709, 750, 762
TasI	AATT	5 cut(s)	603, 648, 658, 831, 851
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	2 cut(s)	356, 556
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	640
TseI	GCWGC	2 cut(s)	334, 479
Tsp45I	GTSAC	1 cut(s)	640
TspDTI	ATGAA	2 cut(s)	548, 663
TspGWI	ACGGA	2 cut(s)	562, 780
TspRI	CASTG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	168
XagI	CCTNNNNNAGG	1 cut(s)	570
XapI	RAATTY	4 cut(s)	603, 648, 658, 851
XspI	CTAG	2 cut(s)	579, 889
ZraI	GACGTC	2 cut(s)	430, 868
Zsp2I	ATGCAT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.