Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013478

Physical Location & Seq

Genomic Coordinates Reverse (-)

81484222 .. 81487393

Gene Structure 3172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGACGTTCTCTCAATCTCGTCCCCTCTATTCTCCTCAACTCCCAAACTCTCCCACACCTTCGCCCCAAAACCCATCTCCTACTTCCCCACTTCTTCATCTTCACGACTCCCAACCATCAAATCCGTCTCTCTCCAAGCCCCAAAACCCTCTTTCGCCTCTTCCAAGCCCCAGTCAGCTAACCCTTCGCTGCTTCTCAACTCCGCGCCTCAGACGCCGGCGACGGCCATGAGAGGCGCTGAGGGCGACGCCATGGGGCTCCTGCTCAAGGAGAGGATTGTCTTTTTGGGTAGTAGTATTGATGACTTTGTGGCTGACGCTATTATCAGCCAGCTGCTTTTGTTGGATGCTCAAGACCCCAAGAAGGATATAAAGCTCTTCATTAACTCCACTGGTGGCTCTCTCAGGACTACTGAGATAGTGTTGTTCATGTGTAATGAAGACTTGAAGAAGAATGGGTTTGTTTGCACGTATGCCCAGCTGGGTGACTCACTCACTGGAAACACTGAATGCAAAATAAATTTGATTGCATTGGATGAACTCATGAACCTTGCCACAATGGCTATATACGACGTCGTTCAGCTTGTGAGGGCTGATGTCTCCACAATTGCGCTCGGCATTGCAGCATCTACAGCTTCAATAATCCTTGGTGGTGGCACCAAAGGCAAGCGTTTTGCAATGCCCAATACACGGGTTATGATTCATCAACCTCTAGGAGGAGCTAGTGGCCAGGCAATAGATGTAGAAATTCAAGCTCGAGAAGTCATGCACAATAAAGACAATGTCACAAGAATTATTTCACAAGTAACTGGTCGTTCATACGAACAAGTTGAAAAAGATATTGACAGAGATCGCTATATGTCCCCCATAGAAGCAGTAGAATATGGAATAATTGACGGCGTTATTGATGGAGATAGTATTATTCCTCTGGAGCCTGTCCCAGACAAAGTAAAACCAAGAATGAGTTATGAGGAAATTAGTAAAGATCCAATGAAGTTCTTGACACCAGACGTCCCTGATGACGAGATATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0040034 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0050789 GO:0050793 GO:0055035 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

344

Amino Acids

37.24

Weight (kDa)

4.99

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	83 - 137	1.4e-15	Clp protease
CLP_protease	PF00574	185 - 303	2.7e-48	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45390
fragaria_vesca	FvH4_3g11210 FvH4_3g11210
malus_domestica	MD05G1265700.v1.1
prunus_persica	Prupe.4G099800_v2.0.a1
pyrus_communis	pycom05g24980 pycom10g20380
rosa_chinensis	RchiOBHm_Chr5g0018161
rosa_laevigata	RLG00000032342
rosa_multiflora	Rmu_sc0006594.1_g000017 Rmu_sc0013020.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059490
rosa_rugosa	Rorug05G0040800
rosa_samantha	Rh5AG133700 Rh5BG132200 Rh5CG144400 Rh5DG134100
rosa_wichuraiana	Rw5G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	576, 1014
AccB1I	GGYRCC	1 cut(s)	656
AccII	CGCG	1 cut(s)	206
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	1 cut(s)	980
AcoI	YGGCCR	2 cut(s)	225, 727
AcsI	RAATTY	2 cut(s)	520, 747
AcyI	GRCGYC	4 cut(s)	215, 249, 573, 1011
AfiI	CCNNNNNNNGG	4 cut(s)	268, 364, 690, 716
AgsI	TTSAA	4 cut(s)	448, 639, 752, 833
AjnI	CCWGG	1 cut(s)	729
AluBI	AGCT	8 cut(s)	179, 334, 376, 481, 583, 635, 722, 755
AluI	AGCT	8 cut(s)	179, 334, 376, 481, 583, 635, 722, 755
Alw26I	GTCTC	2 cut(s)	133, 604
AlwI	GGATC	1 cut(s)	980
Ama87I	CYCGRG	1 cut(s)	756
AoxI	GGCC	2 cut(s)	225, 727
ApeKI	GCWGC	3 cut(s)	190, 334, 623
ApoI	RAATTY	2 cut(s)	520, 747
Asp700I	GAANNNNTTC	1 cut(s)	796
AspLEI	GCGC	3 cut(s)	208, 239, 613
AsuHPI	GGTGA	1 cut(s)	497
AvaI	CYCGRG	1 cut(s)	756
BalI	TGGCCA	1 cut(s)	729
BanI	GGYRCC	1 cut(s)	656
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	177, 321, 635
BccI	CCATC	3 cut(s)	83, 125, 902
BceAI	ACGGC	2 cut(s)	240, 913
BciT130I	CCWGG	1 cut(s)	731
BcoDI	GTCTC	2 cut(s)	133, 604
BfaI	CTAG	2 cut(s)	713, 723
BfmI	CTRYAG	1 cut(s)	630
BfoI	RGCGCY	1 cut(s)	240
BglI	GCCNNNNNGGC	1 cut(s)	560
BisI	GCNGC	3 cut(s)	191, 335, 624
BlsI	GCNGC	3 cut(s)	192, 336, 625
Bme1390I	CCNGG	1 cut(s)	731
BmeT110I	CYCGRG	1 cut(s)	756
BmiI	GGNNCC	3 cut(s)	260, 658, 933
BmrFI	CCNGG	1 cut(s)	731
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	2 cut(s)	337, 635
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	447
BpmI	CTGGAG	1 cut(s)	950
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	251, 336
BsaAI	YACGTR	1 cut(s)	471
BsaHI	GRCGYC	4 cut(s)	215, 249, 573, 1011
BsaJI	CCNNGG	2 cut(s)	252, 646
Bsc4I	CCNNNNNNNGG	4 cut(s)	268, 364, 690, 716
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	4 cut(s)	172, 397, 502, 814
Bse3DI	GCAATG	2 cut(s)	618, 684
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	2 cut(s)	252, 646
BseGI	GGATG	2 cut(s)	352, 541
BseLI	CCNNNNNNNGG	4 cut(s)	268, 364, 690, 716
BseMI	GCAATG	2 cut(s)	618, 684
BseMII	CTCAG	4 cut(s)	224, 231, 405, 418
BseNI	ACTGG	4 cut(s)	172, 397, 502, 814
BseRI	GAGGAG	2 cut(s)	25, 732
BseXI	GCAGC	3 cut(s)	177, 321, 635
BseYI	CCCAGC	2 cut(s)	477, 481
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	2 cut(s)	227, 729
BshNI	GGYRCC	1 cut(s)	656
BsiHKCI	CYCGRG	1 cut(s)	756
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	4 cut(s)	7, 847, 923, 998
BslI	CCNNNNNNNGG	4 cut(s)	268, 364, 690, 716
BsmAI	GTCTC	2 cut(s)	133, 604
BsmBI	CGTCTC	1 cut(s)	133
BsmFI	GGGAC	4 cut(s)	7, 847, 923, 998
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	227, 729
BsoBI	CYCGRG	1 cut(s)	756
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	850, 985
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	2 cut(s)	227, 729
BspCNI	CTCAG	4 cut(s)	223, 232, 406, 417
BspFNI	CGCG	1 cut(s)	206
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	3 cut(s)	260, 658, 933
BspPI	GGATC	1 cut(s)	980
BspQI	GCTCTTC	1 cut(s)	383
BspT107I	GGYRCC	1 cut(s)	656
BsrDI	GCAATG	2 cut(s)	618, 684
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	4 cut(s)	172, 397, 502, 814
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	252, 646
BssMI	GATC	2 cut(s)	850, 985
BssNI	GRCGYC	4 cut(s)	215, 249, 573, 1011
BssT1I	CCWWGG	2 cut(s)	252, 646
Bst2UI	CCWGG	1 cut(s)	731
Bst6I	CTCTTC	2 cut(s)	166, 383
BstACI	GRCGYC	4 cut(s)	215, 249, 573, 1011
BstBAI	YACGTR	1 cut(s)	471
BstC8I	GCNNGC	3 cut(s)	219, 332, 668
BstDEI	CTNAG	4 cut(s)	210, 240, 404, 414
BstDSI	CCRYGG	1 cut(s)	252
BstENI	CCTNNNNNAGG	2 cut(s)	266, 714
BstF5I	GGATG	2 cut(s)	352, 541
BstFNI	CGCG	1 cut(s)	206
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	3 cut(s)	208, 239, 613
BstKTI	GATC	2 cut(s)	853, 988
BstMAI	GTCTC	2 cut(s)	133, 604
BstMBI	GATC	2 cut(s)	850, 985
BstMWI	GCNNNNNNNGC	5 cut(s)	214, 243, 560, 632, 663
BstNI	CCWGG	1 cut(s)	731
BstSCI	CCNGG	1 cut(s)	729
BstSFI	CTRYAG	1 cut(s)	630
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	3 cut(s)	177, 321, 635
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	985
BstYI	RGATCY	1 cut(s)	985
BsuRI	GGCC	2 cut(s)	227, 729
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	352, 541
BtsIMutI	CAGTG	3 cut(s)	390, 495, 504
Cac8I	GCNNGC	3 cut(s)	219, 332, 668
CciI	TCATGA	1 cut(s)	543
CfoI	GCGC	3 cut(s)	208, 239, 613
Cfr10I	RCCGGY	1 cut(s)	217
CseI	GACGC	3 cut(s)	223, 257, 326
CviAII	CATG	5 cut(s)	229, 253, 430, 544, 766
DdeI	CTNAG	4 cut(s)	210, 240, 404, 414
DpnI	GATC	2 cut(s)	852, 987
DpnII	GATC	2 cut(s)	850, 985
EaeI	YGGCCR	2 cut(s)	225, 727
Eam1104I	CTCTTC	2 cut(s)	166, 383
EarI	CTCTTC	2 cut(s)	166, 383
Eco130I	CCWWGG	2 cut(s)	252, 646
Eco24I	GRGCYC	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	756
EcoNI	CCTNNNNNAGG	2 cut(s)	266, 714
EcoRII	CCWGG	1 cut(s)	729
EcoT14I	CCWWGG	2 cut(s)	252, 646
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	2 cut(s)	252, 646
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	5 cut(s)	232, 256, 433, 547, 769
FaqI	GGGAC	4 cut(s)	7, 847, 923, 998
FatI	CATG	5 cut(s)	228, 252, 429, 543, 765
Fnu4HI	GCNGC	3 cut(s)	191, 335, 624
FokI	GGATG	2 cut(s)	359, 548
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	3 cut(s)	191, 335, 624
FspBI	CTAG	2 cut(s)	713, 723
GlaI	GCGC	3 cut(s)	207, 238, 612
GluI	GCNGC	3 cut(s)	191, 335, 624
GsaI	CCCAGC	2 cut(s)	481, 485
GsuI	CTGGAG	1 cut(s)	950
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	227, 729
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	3 cut(s)	223, 257, 326
HhaI	GCGC	3 cut(s)	208, 239, 613
Hin1I	GRCGYC	4 cut(s)	215, 249, 573, 1011
Hin1II	CATG	5 cut(s)	232, 256, 433, 547, 769
Hin6I	GCGC	3 cut(s)	206, 237, 611
HinP1I	GCGC	3 cut(s)	206, 237, 611
HinfI	GANTC	3 cut(s)	108, 488, 700
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	497
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	7 cut(s)	105, 353, 406, 544, 758, 929, 1000
Hpy99I	CGWCG	4 cut(s)	226, 251, 575, 578
HpyAV	CCTTC	3 cut(s)	70, 195, 358
HpyCH4IV	ACGT	4 cut(s)	6, 470, 573, 1011
HpyCH4V	TGCA	6 cut(s)	468, 513, 530, 623, 677, 769
HpyF10VI	GCNNNNNNNGC	5 cut(s)	214, 243, 560, 632, 663
HpyF3I	CTNAG	4 cut(s)	210, 240, 404, 414
HpySE526I	ACGT	4 cut(s)	6, 470, 573, 1011
Hsp92I	GRCGYC	4 cut(s)	215, 249, 573, 1011
Hsp92II	CATG	5 cut(s)	232, 256, 433, 547, 769
HspAI	GCGC	3 cut(s)	206, 237, 611
KroI	GCCGGC	1 cut(s)	217
KroNI	GCCGGC	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	850, 985
LguI	GCTCTTC	1 cut(s)	383
LmnI	GCTCC	3 cut(s)	264, 719, 931
Lsp1109I	GCAGC	3 cut(s)	177, 321, 635
LweI	GCATC	2 cut(s)	337, 635
MaeI	CTAG	2 cut(s)	713, 723
MaeII	ACGT	4 cut(s)	6, 470, 573, 1011
MaeIII	GTNAC	3 cut(s)	485, 784, 805
MalI	GATC	2 cut(s)	852, 987
MboI	GATC	2 cut(s)	850, 985
MboII	GAAGA	7 cut(s)	87, 93, 153, 370, 452, 460, 463
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	1 cut(s)	985
MhlI	GDGCHC	1 cut(s)	261
MlsI	TGGCCA	1 cut(s)	729
MluCI	AATT	6 cut(s)	520, 606, 747, 792, 891, 975
MluNI	TGGCCA	1 cut(s)	729
MlyI	GAGTC	2 cut(s)	102, 482
MmeI	TCCRAC	1 cut(s)	324
Mox20I	TGGCCA	1 cut(s)	729
MreI	CGCCGGCG	1 cut(s)	217
MroNI	GCCGGC	1 cut(s)	217
MroXI	GAANNNNTTC	1 cut(s)	796
MscI	TGGCCA	1 cut(s)	729
MseI	TTAA	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	729
MspA1I	CMGCKG	2 cut(s)	334, 481
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	731
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	731
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	5 cut(s)	214, 243, 560, 632, 663
NaeI	GCCGGC	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	2 cut(s)	850, 985
NgoMIV	GCCGGC	1 cut(s)	217
NlaIII	CATG	5 cut(s)	232, 256, 433, 547, 769
NlaIV	GGNNCC	3 cut(s)	260, 658, 933
NmeAIII	GCCGAG	1 cut(s)	594
NmuCI	GTSAC	2 cut(s)	485, 784
PaeR7I	CTCGAG	1 cut(s)	756
PagI	TCATGA	1 cut(s)	543
PciSI	GCTCTTC	1 cut(s)	383
PctI	GAATGC	1 cut(s)	515
PdiI	GCCGGC	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	796
PfeI	GAWTC	1 cut(s)	700
PflFI	GACNNNGTC	1 cut(s)	782
PkrI	GCNGC	3 cut(s)	192, 336, 625
PleI	GAGTC	2 cut(s)	102, 482
PpsI	GAGTC	2 cut(s)	102, 482
Ppu21I	YACGTR	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	729
PspFI	CCCAGC	2 cut(s)	477, 481
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	3 cut(s)	260, 658, 933
PsuI	RGATCY	1 cut(s)	985
PsyI	GACNNNGTC	1 cut(s)	782
PvuII	CAGCTG	2 cut(s)	334, 481
SapI	GCTCTTC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	3 cut(s)	191, 335, 624
Sau3AI	GATC	2 cut(s)	850, 985
SchI	GAGTC	2 cut(s)	102, 482
ScrFI	CCNGG	1 cut(s)	731
SduI	GDGCHC	1 cut(s)	261
SfaNI	GCATC	2 cut(s)	337, 635
SfcI	CTRYAG	1 cut(s)	630
Sfr274I	CTCGAG	1 cut(s)	756
SgrAI	CRCCGGYG	1 cut(s)	217
SlaI	CTCGAG	1 cut(s)	756
SmlI	CTYRAG	3 cut(s)	266, 351, 756
SmoI	CTYRAG	3 cut(s)	266, 351, 756
Sse9I	AATT	6 cut(s)	520, 606, 747, 792, 891, 975
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	2 cut(s)	713, 723
StyD4I	CCNGG	1 cut(s)	729
StyI	CCWWGG	2 cut(s)	252, 646
TaiI	ACGT	4 cut(s)	9, 473, 576, 1014
TaqI	TCGA	1 cut(s)	757
TasI	AATT	6 cut(s)	520, 606, 747, 792, 891, 975
TfiI	GAWTC	1 cut(s)	700
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	3 cut(s)	397, 502, 511
TseFI	GTSAC	2 cut(s)	485, 784
TseI	GCWGC	3 cut(s)	190, 334, 623
Tsp45I	GTSAC	2 cut(s)	485, 784
TspDTI	ATGAA	9 cut(s)	87, 370, 418, 453, 552, 560, 692, 807, 1007
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	3 cut(s)	397, 502, 511
Tth111I	GACNNNGTC	1 cut(s)	782
XagI	CCTNNNNNAGG	2 cut(s)	266, 714
XapI	RAATTY	2 cut(s)	520, 747
XhoI	CTCGAG	1 cut(s)	756
XmnI	GAANNNNTTC	1 cut(s)	796
XspI	CTAG	2 cut(s)	713, 723
ZraI	GACGTC	2 cut(s)	574, 1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.