Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013478

Physical Location & Seq

Genomic Coordinates Forward (+)

12855784 .. 12858832

Gene Structure 3049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG144400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCGTCCCTTTGCAGGGTCCAACTTAGGGAAGATGTGTCAACCTTTAACTTTTAGGCCCAATTGGGTCTGTAACCTCTATACCTGCTCTCAATTCACTTCGTCGTATCAAAATCTGAGCTGCTCTCTCAGACACTACCCAATCTCTGCAACCATGGACGTTCTCTCAATCTCATCCCCTCTATTCTCCTCAACTCCCAAACTCTCCCACACCTTCGCCCCAAAACCCATCTCCTACTTCCCCACTTCTTCATCTTCACGACTCCCAACCATCAAATCCGTCTCTCTCCAAACCCCAAAACCCTCTTTCGCCTCTTCCAAGCCCCAGTCAGCTAACCCTTCGCTGCTTCTCAACTCCGCGCCTCAGACGCCGGCGACGGCCATGAGAGGCGCCGAGGGCGACGCCATGGGGCTCCTGCTCAGGGAGAGGATTGTCTTTTTGGGTAGTAGTATTGATGACTTTGTGGCTGACGCCATTATTAGCCAGCTGCTTTTGTTGGATGCTCAGGACCCCAAGAAGGATATCAAGCTCTTCATTAACTCCACTGGTGGTTCTCTCAGTGCCACAATGGCTATATACGACGTCGTTCAGCTTGTGAGGGCTGATGTCTCCACAATTGCGCTTGGCATTGCAGCATCTACAGCTTCAATAATCCTTGGTGGTGGCACCAAAGGCAAGCGTTTTGCAATGCCCAATACACGGGTTATGATTCATCAACCTCTTGGAGGAGCTAGTGGCCAGGCAATAGATGTAGAAATTCAAGCTCGAGAAGTCATGCACAATAAAGACAATGTCACAAGAATTATTTCACAAGTAACCGGTCGTTCATACGAACAAGTTGAAAAAGATATTGACAGAGATCGCTATATGTCCCCCATAGAAGCAGTAGAATATGGAATAATTGACGGAGTTATTGATGGAGATAGTATTATTCCTCTGGAGCCTGTCCCAGACAAAGTAAAACCAAGAATGAGTTATGAGGAAATTAGTAAAGATCCAATGAAGTTCTTGACACCAGACGTCCCTGATGACGAGATATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0040034 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0050789 GO:0050793 GO:0055035 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

347

Amino Acids

37.71

Weight (kDa)

6.12

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	134 - 306	6.3e-72	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45390
fragaria_vesca	FvH4_3g11210 FvH4_3g11210
malus_domestica	MD05G1265700.v1.1
prunus_persica	Prupe.4G099800_v2.0.a1
pyrus_communis	pycom05g24980 pycom10g20380
rosa_chinensis	RchiOBHm_Chr5g0018161
rosa_laevigata	RLG00000032342
rosa_multiflora	Rmu_sc0006594.1_g000017 Rmu_sc0013020.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059490
rosa_rugosa	Rorug05G0040800
rosa_samantha	Rh5AG133700 Rh5BG132200 Rh5CG144400 Rh5DG134100
rosa_wichuraiana	Rw5G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	585, 1023
Acc36I	ACCTGC	1 cut(s)	92
AccB1I	GGYRCC	2 cut(s)	389, 665
AccII	CGCG	1 cut(s)	359
AciI	CCGC	1 cut(s)	357
AclWI	GGATC	1 cut(s)	989
AcoI	YGGCCR	2 cut(s)	378, 736
AcsI	RAATTY	1 cut(s)	756
AcyI	GRCGYC	6 cut(s)	368, 390, 402, 471, 582, 1020
AfiI	CCNNNNNNNGG	7 cut(s)	14, 15, 27, 421, 517, 699, 725
AgeI	ACCGGT	1 cut(s)	818
AgsI	TTSAA	3 cut(s)	648, 761, 842
AjnI	CCWGG	1 cut(s)	738
AluBI	AGCT	8 cut(s)	120, 332, 487, 529, 592, 644, 731, 764
AluI	AGCT	8 cut(s)	120, 332, 487, 529, 592, 644, 731, 764
Alw26I	GTCTC	2 cut(s)	286, 613
AlwI	GGATC	1 cut(s)	989
Ama87I	CYCGRG	1 cut(s)	765
AoxI	GGCC	3 cut(s)	56, 378, 736
ApeKI	GCWGC	4 cut(s)	120, 343, 487, 632
ApoI	RAATTY	1 cut(s)	756
AsiGI	ACCGGT	1 cut(s)	818
Asp700I	GAANNNNTTC	1 cut(s)	805
AspLEI	GCGC	3 cut(s)	361, 392, 622
AspS9I	GGNCC	3 cut(s)	18, 57, 508
AvaI	CYCGRG	1 cut(s)	765
AvaII	GGWCC	2 cut(s)	18, 508
BalI	TGGCCA	1 cut(s)	738
BanI	GGYRCC	2 cut(s)	389, 665
BanII	GRGCYC	1 cut(s)	414
BbvI	GCAGC	4 cut(s)	107, 330, 474, 644
BccI	CCATC	3 cut(s)	236, 278, 911
BceAI	ACGGC	1 cut(s)	393
BciT130I	CCWGG	1 cut(s)	740
BcoDI	GTCTC	2 cut(s)	286, 613
BfaI	CTAG	1 cut(s)	732
BfmI	CTRYAG	1 cut(s)	639
BfoI	RGCGCY	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	92
BglI	GCCNNNNNGGC	1 cut(s)	569
BisI	GCNGC	4 cut(s)	121, 344, 488, 633
BlsI	GCNGC	4 cut(s)	122, 345, 489, 634
Bme1390I	CCNGG	1 cut(s)	740
Bme18I	GGWCC	2 cut(s)	18, 508
BmeT110I	CYCGRG	1 cut(s)	765
BmgT120I	GGNCC	3 cut(s)	18, 57, 508
BmiI	GGNNCC	6 cut(s)	19, 391, 413, 510, 667, 942
BmrFI	CCNGG	1 cut(s)	740
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	490, 644
BmuI	ACTGGG	1 cut(s)	319
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BpmI	CTGGAG	1 cut(s)	959
Bpu10I	CCTNAGC	2 cut(s)	419, 504
BsaHI	GRCGYC	6 cut(s)	368, 390, 402, 471, 582, 1020
BsaJI	CCNNGG	4 cut(s)	153, 393, 405, 655
BsaWI	WCCGGW	1 cut(s)	818
Bsc4I	CCNNNNNNNGG	7 cut(s)	14, 15, 27, 421, 517, 699, 725
Bse118I	RCCGGY	2 cut(s)	370, 818
Bse1I	ACTGG	2 cut(s)	325, 550
Bse3DI	GCAATG	2 cut(s)	627, 693
BseBI	CCWGG	1 cut(s)	740
BseDI	CCNNGG	4 cut(s)	153, 393, 405, 655
BseGI	GGATG	2 cut(s)	173, 505
BseLI	CCNNNNNNNGG	7 cut(s)	14, 15, 27, 421, 517, 699, 725
BseMI	GCAATG	2 cut(s)	627, 693
BseMII	CTCAG	6 cut(s)	107, 142, 377, 433, 518, 571
BseNI	ACTGG	2 cut(s)	325, 550
BseRI	GAGGAG	2 cut(s)	178, 741
BseXI	GCAGC	4 cut(s)	107, 330, 474, 644
Bsh1236I	CGCG	1 cut(s)	359
Bsh1285I	CGRYCG	1 cut(s)	823
BshFI	GGCC	3 cut(s)	58, 380, 738
BshNI	GGYRCC	2 cut(s)	389, 665
BshTI	ACCGGT	1 cut(s)	818
BsiEI	CGRYCG	1 cut(s)	823
BsiHKCI	CYCGRG	1 cut(s)	765
BsiSI	CCGG	2 cut(s)	371, 819
BslFI	GGGAC	3 cut(s)	856, 932, 1007
BslI	CCNNNNNNNGG	7 cut(s)	14, 15, 27, 421, 517, 699, 725
BsmAI	GTCTC	2 cut(s)	286, 613
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	3 cut(s)	856, 932, 1007
BsnI	GGCC	3 cut(s)	58, 380, 738
BsoBI	CYCGRG	1 cut(s)	765
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	2 cut(s)	859, 994
Bsp19I	CCATGG	2 cut(s)	153, 405
BspACI	CCGC	1 cut(s)	357
BspANI	GGCC	3 cut(s)	58, 380, 738
BspCNI	CTCAG	6 cut(s)	108, 141, 376, 432, 517, 570
BspFNI	CGCG	1 cut(s)	359
BspLI	GGNNCC	6 cut(s)	19, 391, 413, 510, 667, 942
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	989
BspQI	GCTCTTC	1 cut(s)	536
BspT107I	GGYRCC	2 cut(s)	389, 665
BsrDI	GCAATG	2 cut(s)	627, 693
BsrFI	RCCGGY	2 cut(s)	370, 818
BsrI	ACTGG	2 cut(s)	325, 550
BssAI	RCCGGY	2 cut(s)	370, 818
BssECI	CCNNGG	4 cut(s)	153, 393, 405, 655
BssMI	GATC	2 cut(s)	859, 994
BssNI	GRCGYC	6 cut(s)	368, 390, 402, 471, 582, 1020
BssT1I	CCWWGG	3 cut(s)	153, 405, 655
Bst2UI	CCWGG	1 cut(s)	740
Bst6I	CTCTTC	2 cut(s)	319, 536
BstACI	GRCGYC	6 cut(s)	368, 390, 402, 471, 582, 1020
BstC8I	GCNNGC	3 cut(s)	372, 485, 677
BstDEI	CTNAG	7 cut(s)	25, 116, 128, 363, 419, 504, 557
BstDSI	CCRYGG	2 cut(s)	153, 405
BstENI	CCTNNNNNAGG	1 cut(s)	723
BstF5I	GGATG	2 cut(s)	173, 505
BstFNI	CGCG	1 cut(s)	359
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	3 cut(s)	361, 392, 622
BstKTI	GATC	2 cut(s)	862, 997
BstMAI	GTCTC	2 cut(s)	286, 613
BstMBI	GATC	2 cut(s)	859, 994
BstMCI	CGRYCG	1 cut(s)	823
BstMWI	GCNNNNNNNGC	5 cut(s)	367, 396, 569, 641, 672
BstNI	CCWGG	1 cut(s)	740
BstSCI	CCNGG	1 cut(s)	738
BstSFI	CTRYAG	1 cut(s)	639
BstUI	CGCG	1 cut(s)	359
BstV1I	GCAGC	4 cut(s)	107, 330, 474, 644
BstX2I	RGATCY	1 cut(s)	994
BstYI	RGATCY	1 cut(s)	994
BsuRI	GGCC	3 cut(s)	58, 380, 738
BtgI	CCRYGG	2 cut(s)	153, 405
BtsCI	GGATG	2 cut(s)	173, 505
BtsIMutI	CAGTG	2 cut(s)	543, 565
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	3 cut(s)	372, 485, 677
CfoI	GCGC	3 cut(s)	361, 392, 622
Cfr10I	RCCGGY	2 cut(s)	370, 818
Cfr13I	GGNCC	3 cut(s)	18, 57, 508
CseI	GACGC	3 cut(s)	376, 410, 479
CspAI	ACCGGT	1 cut(s)	818
CviAII	CATG	4 cut(s)	154, 382, 406, 775
DdeI	CTNAG	7 cut(s)	25, 116, 128, 363, 419, 504, 557
DinI	GGCGCC	1 cut(s)	391
DpnI	GATC	2 cut(s)	861, 996
DpnII	GATC	2 cut(s)	859, 994
EaeI	YGGCCR	2 cut(s)	378, 736
Eam1104I	CTCTTC	2 cut(s)	319, 536
EarI	CTCTTC	2 cut(s)	319, 536
Eco130I	CCWWGG	3 cut(s)	153, 405, 655
Eco24I	GRGCYC	1 cut(s)	414
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	2 cut(s)	18, 508
Eco88I	CYCGRG	1 cut(s)	765
EcoNI	CCTNNNNNAGG	1 cut(s)	723
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	738
EcoRV	GATATC	1 cut(s)	523
EcoT14I	CCWWGG	3 cut(s)	153, 405, 655
EcoT38I	GRGCYC	1 cut(s)	414
EgeI	GGCGCC	1 cut(s)	391
EheI	GGCGCC	1 cut(s)	391
ErhI	CCWWGG	3 cut(s)	153, 405, 655
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	4 cut(s)	157, 385, 409, 778
FaqI	GGGAC	3 cut(s)	856, 932, 1007
FatI	CATG	4 cut(s)	153, 381, 405, 774
Fnu4HI	GCNGC	4 cut(s)	121, 344, 488, 633
FokI	GGATG	2 cut(s)	160, 512
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	4 cut(s)	121, 344, 488, 633
FspBI	CTAG	1 cut(s)	732
GlaI	GCGC	3 cut(s)	360, 391, 621
GluI	GCNGC	4 cut(s)	121, 344, 488, 633
GsuI	CTGGAG	1 cut(s)	959
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	3 cut(s)	58, 380, 738
HapII	CCGG	2 cut(s)	371, 819
HgaI	GACGC	3 cut(s)	376, 410, 479
HhaI	GCGC	3 cut(s)	361, 392, 622
Hin1I	GRCGYC	6 cut(s)	368, 390, 402, 471, 582, 1020
Hin1II	CATG	4 cut(s)	157, 385, 409, 778
Hin6I	GCGC	3 cut(s)	359, 390, 620
HinP1I	GCGC	3 cut(s)	359, 390, 620
HincII	GTYRAC	1 cut(s)	41
HindII	GTYRAC	1 cut(s)	41
HinfI	GANTC	2 cut(s)	261, 709
HpaII	CCGG	2 cut(s)	371, 819
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	3 cut(s)	117, 131, 366
Hpy188III	TCNNGA	5 cut(s)	258, 506, 767, 938, 1009
Hpy8I	GTNNAC	1 cut(s)	41
Hpy99I	CGWCG	5 cut(s)	106, 379, 404, 584, 587
HpyAV	CCTTC	3 cut(s)	223, 348, 511
HpyCH4IV	ACGT	3 cut(s)	159, 582, 1020
HpyCH4V	TGCA	5 cut(s)	14, 149, 632, 686, 778
HpyF10VI	GCNNNNNNNGC	5 cut(s)	367, 396, 569, 641, 672
HpyF3I	CTNAG	7 cut(s)	25, 116, 128, 363, 419, 504, 557
HpySE526I	ACGT	3 cut(s)	159, 582, 1020
Hsp92I	GRCGYC	6 cut(s)	368, 390, 402, 471, 582, 1020
Hsp92II	CATG	4 cut(s)	157, 385, 409, 778
HspAI	GCGC	3 cut(s)	359, 390, 620
KasI	GGCGCC	1 cut(s)	389
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	859, 994
LguI	GCTCTTC	1 cut(s)	536
LmnI	GCTCC	3 cut(s)	417, 728, 940
Lsp1109I	GCAGC	4 cut(s)	107, 330, 474, 644
LweI	GCATC	2 cut(s)	490, 644
MaeI	CTAG	1 cut(s)	732
MaeII	ACGT	3 cut(s)	159, 582, 1020
MaeIII	GTNAC	3 cut(s)	71, 793, 814
MalI	GATC	2 cut(s)	861, 996
MboI	GATC	2 cut(s)	859, 994
MboII	GAAGA	5 cut(s)	43, 240, 246, 306, 523
MfeI	CAATTG	2 cut(s)	61, 615
MflI	RGATCY	1 cut(s)	994
MhlI	GDGCHC	1 cut(s)	414
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	7 cut(s)	61, 92, 615, 756, 801, 900, 984
MluNI	TGGCCA	1 cut(s)	738
Mly113I	GGCGCC	1 cut(s)	390
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	2 cut(s)	45, 477
Mox20I	TGGCCA	1 cut(s)	738
MreI	CGCCGGCG	1 cut(s)	370
MroNI	GCCGGC	1 cut(s)	370
MroXI	GAANNNNTTC	1 cut(s)	805
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	2 cut(s)	47, 537
Msp20I	TGGCCA	1 cut(s)	738
MspA1I	CMGCKG	1 cut(s)	487
MspI	CCGG	2 cut(s)	371, 819
MspR9I	CCNGG	1 cut(s)	740
MunI	CAATTG	2 cut(s)	61, 615
MvaI	CCWGG	1 cut(s)	740
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	5 cut(s)	367, 396, 569, 641, 672
NaeI	GCCGGC	1 cut(s)	372
NarI	GGCGCC	1 cut(s)	390
NcoI	CCATGG	2 cut(s)	153, 405
NdeII	GATC	2 cut(s)	859, 994
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	4 cut(s)	157, 385, 409, 778
NlaIV	GGNNCC	6 cut(s)	19, 391, 413, 510, 667, 942
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	793
PaeR7I	CTCGAG	1 cut(s)	765
PciSI	GCTCTTC	1 cut(s)	536
PdiI	GCCGGC	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	805
PfeI	GAWTC	1 cut(s)	709
PflFI	GACNNNGTC	1 cut(s)	791
PinAI	ACCGGT	1 cut(s)	818
PkrI	GCNGC	4 cut(s)	122, 345, 489, 634
PleI	GAGTC	1 cut(s)	255
PluTI	GGCGCC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	255
PpuMI	RGGWCCY	1 cut(s)	508
Psp5II	RGGWCCY	1 cut(s)	508
Psp6I	CCWGG	1 cut(s)	738
PspGI	CCWGG	1 cut(s)	738
PspN4I	GGNNCC	6 cut(s)	19, 391, 413, 510, 667, 942
PspPI	GGNCC	3 cut(s)	18, 57, 508
PspPPI	RGGWCCY	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	994
PsyI	GACNNNGTC	1 cut(s)	791
PvuII	CAGCTG	1 cut(s)	487
SapI	GCTCTTC	1 cut(s)	536
SaqAI	TTAA	2 cut(s)	47, 537
SatI	GCNGC	4 cut(s)	121, 344, 488, 633
Sau3AI	GATC	2 cut(s)	859, 994
Sau96I	GGNCC	3 cut(s)	18, 57, 508
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	1 cut(s)	740
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	2 cut(s)	490, 644
SfcI	CTRYAG	1 cut(s)	639
SfoI	GGCGCC	1 cut(s)	391
Sfr274I	CTCGAG	1 cut(s)	765
SgrAI	CRCCGGYG	1 cut(s)	370
SinI	GGWCC	2 cut(s)	18, 508
SlaI	CTCGAG	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	765
SmoI	CTYRAG	1 cut(s)	765
Sse9I	AATT	7 cut(s)	61, 92, 615, 756, 801, 900, 984
SsiI	CCGC	1 cut(s)	357
SspDI	GGCGCC	1 cut(s)	389
SspMI	CTAG	1 cut(s)	732
StyD4I	CCNGG	1 cut(s)	738
StyI	CCWWGG	3 cut(s)	153, 405, 655
TaiI	ACGT	3 cut(s)	162, 585, 1023
TaqI	TCGA	1 cut(s)	766
TasI	AATT	7 cut(s)	61, 92, 615, 756, 801, 900, 984
TfiI	GAWTC	1 cut(s)	709
Tru1I	TTAA	2 cut(s)	47, 537
Tru9I	TTAA	2 cut(s)	47, 537
TscAI	CASTG	2 cut(s)	550, 565
TseFI	GTSAC	1 cut(s)	793
TseI	GCWGC	4 cut(s)	120, 343, 487, 632
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	5 cut(s)	240, 523, 701, 816, 1016
TspGWI	ACGGA	2 cut(s)	268, 921
TspRI	CASTG	2 cut(s)	550, 565
Tth111I	GACNNNGTC	1 cut(s)	791
VpaK11BI	GGWCC	2 cut(s)	18, 508
XagI	CCTNNNNNAGG	1 cut(s)	723
XapI	RAATTY	1 cut(s)	756
XhoI	CTCGAG	1 cut(s)	765
XmnI	GAANNNNTTC	1 cut(s)	805
XspI	CTAG	1 cut(s)	732
ZraI	GACGTC	2 cut(s)	583, 1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.