ATP-dependent Clp protease proteolytic subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G45390 |
| fragaria_vesca | FvH4_3g11210 FvH4_3g11210 |
| malus_domestica | MD05G1265700.v1.1 |
| prunus_persica | Prupe.4G099800_v2.0.a1 |
| pyrus_communis | pycom05g24980 pycom10g20380 |
| rosa_chinensis | RchiOBHm_Chr5g0018161 |
| rosa_laevigata | RLG00000032342 |
| rosa_multiflora | Rmu_sc0006594.1_g000017 Rmu_sc0013020.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00059490 |
| rosa_rugosa | Rorug05G0040800 |
| rosa_samantha | Rh5AG133700 Rh5BG132200 Rh5CG144400 Rh5DG134100 |
| rosa_wichuraiana | Rw5G011680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 239, 515, 790 |
| AciI | CCGC | 1 cut(s) | 399 |
| AclWI | GGATC | 2 cut(s) | 717, 839 |
| AcoI | YGGCCR | 1 cut(s) | 586 |
| AcsI | RAATTY | 5 cut(s) | 113, 606, 651, 661, 854 |
| AcyI | GRCGYC | 2 cut(s) | 218, 252 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 549, 575, 805 |
| AgsI | TTSAA | 4 cut(s) | 611, 660, 683, 740 |
| AjiI | CACGTC | 1 cut(s) | 7 |
| AjnI | CCWGG | 2 cut(s) | 354, 588 |
| AluBI | AGCT | 8 cut(s) | 55, 66, 209, 337, 379, 442, 494, 614 |
| AluI | AGCT | 8 cut(s) | 55, 66, 209, 337, 379, 442, 494, 614 |
| Alw21I | GWGCWC | 1 cut(s) | 12 |
| Alw26I | GTCTC | 1 cut(s) | 135 |
| AlwI | GGATC | 2 cut(s) | 717, 839 |
| Ama87I | CYCGRG | 1 cut(s) | 615 |
| AoxI | GGCC | 1 cut(s) | 586 |
| ApeKI | GCWGC | 2 cut(s) | 337, 482 |
| ApoI | RAATTY | 5 cut(s) | 113, 606, 651, 661, 854 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 655 |
| AsuHPI | GGTGA | 2 cut(s) | 154, 820 |
| AsuII | TTCGAA | 1 cut(s) | 110 |
| AvaI | CYCGRG | 1 cut(s) | 615 |
| BalI | TGGCCA | 1 cut(s) | 588 |
| BanI | GGYRCC | 3 cut(s) | 239, 515, 790 |
| Bbv12I | GWGCWC | 1 cut(s) | 12 |
| BbvCI | CCTCAGC | 1 cut(s) | 205 |
| BbvI | GCAGC | 2 cut(s) | 324, 494 |
| BccI | CCATC | 2 cut(s) | 89, 749 |
| BceAI | ACGGC | 1 cut(s) | 202 |
| BciT130I | CCWGG | 2 cut(s) | 356, 590 |
| BcoDI | GTCTC | 1 cut(s) | 135 |
| BfaI | CTAG | 1 cut(s) | 582 |
| BfmI | CTRYAG | 1 cut(s) | 225 |
| BisI | GCNGC | 3 cut(s) | 338, 400, 483 |
| BlsI | GCNGC | 3 cut(s) | 339, 401, 484 |
| Bme1390I | CCNGG | 2 cut(s) | 356, 590 |
| BmeT110I | CYCGRG | 1 cut(s) | 615 |
| BmgBI | CACGTC | 1 cut(s) | 7 |
| BmiI | GGNNCC | 3 cut(s) | 241, 517, 792 |
| BmrFI | CCNGG | 2 cut(s) | 356, 590 |
| BmsI | GCATC | 2 cut(s) | 340, 494 |
| Bpu10I | CCTNAGC | 2 cut(s) | 205, 269 |
| Bpu14I | TTCGAA | 1 cut(s) | 110 |
| Bsa29I | ATCGAT | 1 cut(s) | 753 |
| BsaHI | GRCGYC | 2 cut(s) | 218, 252 |
| BsaJI | CCNNGG | 4 cut(s) | 243, 255, 354, 505 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 549, 575, 805 |
| Bse118I | RCCGGY | 1 cut(s) | 220 |
| Bse1I | ACTGG | 2 cut(s) | 400, 673 |
| Bse3DI | GCAATG | 2 cut(s) | 477, 543 |
| BseBI | CCWGG | 2 cut(s) | 356, 590 |
| BseCI | ATCGAT | 1 cut(s) | 753 |
| BseDI | CCNNGG | 4 cut(s) | 243, 255, 354, 505 |
| BseGI | GGATG | 2 cut(s) | 20, 355 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 549, 575, 805 |
| BseMI | GCAATG | 2 cut(s) | 477, 543 |
| BseMII | CTCAG | 4 cut(s) | 219, 227, 283, 421 |
| BseNI | ACTGG | 2 cut(s) | 400, 673 |
| BseRI | GAGGAG | 1 cut(s) | 201 |
| BseXI | GCAGC | 2 cut(s) | 324, 494 |
| BsgI | GTGCAG | 1 cut(s) | 445 |
| BshFI | GGCC | 1 cut(s) | 588 |
| BshNI | GGYRCC | 3 cut(s) | 239, 515, 790 |
| BshVI | ATCGAT | 1 cut(s) | 753 |
| BsiHKAI | GWGCWC | 1 cut(s) | 12 |
| BsiHKCI | CYCGRG | 1 cut(s) | 615 |
| BsiSI | CCGG | 1 cut(s) | 221 |
| BslFI | GGGAC | 3 cut(s) | 706, 782, 857 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 549, 575, 805 |
| BsmAI | GTCTC | 1 cut(s) | 135 |
| BsmFI | GGGAC | 3 cut(s) | 706, 782, 857 |
| BsnI | GGCC | 1 cut(s) | 588 |
| BsoBI | CYCGRG | 1 cut(s) | 615 |
| Bsp119I | TTCGAA | 1 cut(s) | 110 |
| Bsp1286I | GDGCHC | 1 cut(s) | 12 |
| Bsp143I | GATC | 2 cut(s) | 709, 844 |
| BspACI | CCGC | 1 cut(s) | 399 |
| BspANI | GGCC | 1 cut(s) | 588 |
| BspCNI | CTCAG | 4 cut(s) | 218, 226, 282, 420 |
| BspDI | ATCGAT | 1 cut(s) | 753 |
| BspLI | GGNNCC | 3 cut(s) | 241, 517, 792 |
| BspPI | GGATC | 2 cut(s) | 717, 839 |
| BspQI | GCTCTTC | 1 cut(s) | 386 |
| BspT104I | TTCGAA | 1 cut(s) | 110 |
| BspT107I | GGYRCC | 3 cut(s) | 239, 515, 790 |
| BsrDI | GCAATG | 2 cut(s) | 477, 543 |
| BsrFI | RCCGGY | 1 cut(s) | 220 |
| BsrI | ACTGG | 2 cut(s) | 400, 673 |
| BssAI | RCCGGY | 1 cut(s) | 220 |
| BssECI | CCNNGG | 4 cut(s) | 243, 255, 354, 505 |
| BssMI | GATC | 2 cut(s) | 709, 844 |
| BssNI | GRCGYC | 2 cut(s) | 218, 252 |
| BssT1I | CCWWGG | 2 cut(s) | 255, 505 |
| Bst2UI | CCWGG | 2 cut(s) | 356, 590 |
| Bst4CI | ACNGT | 1 cut(s) | 466 |
| Bst6I | CTCTTC | 2 cut(s) | 103, 386 |
| BstACI | GRCGYC | 2 cut(s) | 218, 252 |
| BstBI | TTCGAA | 1 cut(s) | 110 |
| BstC8I | GCNNGC | 4 cut(s) | 191, 222, 335, 527 |
| BstDEI | CTNAG | 4 cut(s) | 205, 213, 269, 407 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 573 |
| BstF5I | GGATG | 2 cut(s) | 20, 355 |
| BstKTI | GATC | 2 cut(s) | 712, 847 |
| BstMAI | GTCTC | 1 cut(s) | 135 |
| BstMBI | GATC | 2 cut(s) | 709, 844 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 246, 419, 491, 522 |
| BstNI | CCWGG | 2 cut(s) | 356, 590 |
| BstSCI | CCNGG | 2 cut(s) | 354, 588 |
| BstSFI | CTRYAG | 1 cut(s) | 225 |
| BstV1I | GCAGC | 2 cut(s) | 324, 494 |
| BstX2I | RGATCY | 1 cut(s) | 844 |
| BstYI | RGATCY | 1 cut(s) | 844 |
| Bsu15I | ATCGAT | 1 cut(s) | 753 |
| BsuRI | GGCC | 1 cut(s) | 588 |
| BsuTUI | ATCGAT | 1 cut(s) | 753 |
| BtrI | CACGTC | 1 cut(s) | 7 |
| BtsCI | GGATG | 2 cut(s) | 20, 355 |
| BtsIMutI | CAGTG | 3 cut(s) | 393, 415, 666 |
| Cac8I | GCNNGC | 4 cut(s) | 191, 222, 335, 527 |
| Cfr10I | RCCGGY | 1 cut(s) | 220 |
| ClaI | ATCGAT | 1 cut(s) | 753 |
| CseI | GACGC | 3 cut(s) | 226, 260, 329 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 582, 617 |
| CviAII | CATG | 2 cut(s) | 232, 625 |
| DdeI | CTNAG | 4 cut(s) | 205, 213, 269, 407 |
| DpnI | GATC | 2 cut(s) | 711, 846 |
| DpnII | GATC | 2 cut(s) | 709, 844 |
| EaeI | YGGCCR | 1 cut(s) | 586 |
| Eam1104I | CTCTTC | 2 cut(s) | 103, 386 |
| EarI | CTCTTC | 2 cut(s) | 103, 386 |
| Eco130I | CCWWGG | 2 cut(s) | 255, 505 |
| Eco32I | GATATC | 1 cut(s) | 373 |
| Eco88I | CYCGRG | 1 cut(s) | 615 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 573 |
| EcoRI | GAATTC | 1 cut(s) | 651 |
| EcoRII | CCWGG | 2 cut(s) | 354, 588 |
| EcoRV | GATATC | 1 cut(s) | 373 |
| EcoT14I | CCWWGG | 2 cut(s) | 255, 505 |
| EcoT22I | ATGCAT | 1 cut(s) | 630 |
| ErhI | CCWWGG | 2 cut(s) | 255, 505 |
| FaeI | CATG | 2 cut(s) | 235, 628 |
| FaqI | GGGAC | 3 cut(s) | 706, 782, 857 |
| FatI | CATG | 2 cut(s) | 231, 624 |
| Fnu4HI | GCNGC | 3 cut(s) | 338, 400, 483 |
| FokI | GGATG | 2 cut(s) | 7, 362 |
| Fsp4HI | GCNGC | 3 cut(s) | 338, 400, 483 |
| FspBI | CTAG | 1 cut(s) | 582 |
| GluI | GCNGC | 3 cut(s) | 338, 400, 483 |
| HaeIII | GGCC | 1 cut(s) | 588 |
| HapII | CCGG | 1 cut(s) | 221 |
| HgaI | GACGC | 3 cut(s) | 226, 260, 329 |
| Hin1I | GRCGYC | 2 cut(s) | 218, 252 |
| Hin1II | CATG | 2 cut(s) | 235, 628 |
| HinfI | GANTC | 2 cut(s) | 359, 559 |
| HpaII | CCGG | 1 cut(s) | 221 |
| HphI | GGTGA | 2 cut(s) | 154, 820 |
| Hpy188I | TCNGA | 1 cut(s) | 216 |
| Hpy188III | TCNNGA | 2 cut(s) | 196, 617 |
| Hpy99I | CGWCG | 1 cut(s) | 254 |
| HpyAV | CCTTC | 1 cut(s) | 44 |
| HpyCH4III | ACNGT | 1 cut(s) | 466 |
| HpyCH4IV | ACGT | 1 cut(s) | 6 |
| HpyCH4V | TGCA | 5 cut(s) | 462, 470, 482, 536, 628 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 246, 419, 491, 522 |
| HpyF3I | CTNAG | 4 cut(s) | 205, 213, 269, 407 |
| HpySE526I | ACGT | 1 cut(s) | 6 |
| Hsp92I | GRCGYC | 2 cut(s) | 218, 252 |
| Hsp92II | CATG | 2 cut(s) | 235, 628 |
| KroI | GCCGGC | 1 cut(s) | 220 |
| KroNI | GCCGGC | 1 cut(s) | 222 |
| Kzo9I | GATC | 2 cut(s) | 709, 844 |
| LguI | GCTCTTC | 1 cut(s) | 386 |
| LmnI | GCTCC | 3 cut(s) | 77, 198, 214 |
| Lsp1109I | GCAGC | 2 cut(s) | 324, 494 |
| LweI | GCATC | 2 cut(s) | 340, 494 |
| MaeI | CTAG | 1 cut(s) | 582 |
| MaeII | ACGT | 1 cut(s) | 6 |
| MaeIII | GTNAC | 2 cut(s) | 171, 643 |
| MalI | GATC | 2 cut(s) | 711, 846 |
| MboI | GATC | 2 cut(s) | 709, 844 |
| MboII | GAAGA | 5 cut(s) | 90, 93, 96, 99, 373 |
| MflI | RGATCY | 1 cut(s) | 844 |
| MhlI | GDGCHC | 1 cut(s) | 12 |
| MlsI | TGGCCA | 1 cut(s) | 588 |
| MluCI | AATT | 7 cut(s) | 113, 123, 606, 651, 661, 834, 854 |
| MluNI | TGGCCA | 1 cut(s) | 588 |
| MlyI | GAGTC | 1 cut(s) | 353 |
| MmeI | TCCRAC | 1 cut(s) | 327 |
| Mox20I | TGGCCA | 1 cut(s) | 588 |
| Mph1103I | ATGCAT | 1 cut(s) | 630 |
| MroNI | GCCGGC | 1 cut(s) | 220 |
| MroXI | GAANNNNTTC | 1 cut(s) | 655 |
| MscI | TGGCCA | 1 cut(s) | 588 |
| MseI | TTAA | 2 cut(s) | 126, 387 |
| Msp20I | TGGCCA | 1 cut(s) | 588 |
| MspA1I | CMGCKG | 1 cut(s) | 337 |
| MspI | CCGG | 1 cut(s) | 221 |
| MspR9I | CCNGG | 2 cut(s) | 356, 590 |
| MvaI | CCWGG | 2 cut(s) | 356, 590 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 246, 419, 491, 522 |
| NaeI | GCCGGC | 1 cut(s) | 222 |
| NdeII | GATC | 2 cut(s) | 709, 844 |
| NgoMIV | GCCGGC | 1 cut(s) | 220 |
| NlaIII | CATG | 2 cut(s) | 235, 628 |
| NlaIV | GGNNCC | 3 cut(s) | 241, 517, 792 |
| NmuCI | GTSAC | 2 cut(s) | 171, 643 |
| NsiI | ATGCAT | 1 cut(s) | 630 |
| NspV | TTCGAA | 1 cut(s) | 110 |
| PaeR7I | CTCGAG | 1 cut(s) | 615 |
| PciSI | GCTCTTC | 1 cut(s) | 386 |
| PdiI | GCCGGC | 1 cut(s) | 222 |
| PdmI | GAANNNNTTC | 1 cut(s) | 655 |
| PfeI | GAWTC | 1 cut(s) | 559 |
| PkrI | GCNGC | 3 cut(s) | 339, 401, 484 |
| PleI | GAGTC | 1 cut(s) | 353 |
| PpsI | GAGTC | 1 cut(s) | 353 |
| Psp6I | CCWGG | 2 cut(s) | 354, 588 |
| PspGI | CCWGG | 2 cut(s) | 354, 588 |
| PspN4I | GGNNCC | 3 cut(s) | 241, 517, 792 |
| PsuI | RGATCY | 1 cut(s) | 844 |
| PvuII | CAGCTG | 1 cut(s) | 337 |
| SapI | GCTCTTC | 1 cut(s) | 386 |
| SaqAI | TTAA | 2 cut(s) | 126, 387 |
| SatI | GCNGC | 3 cut(s) | 338, 400, 483 |
| Sau3AI | GATC | 2 cut(s) | 709, 844 |
| SchI | GAGTC | 1 cut(s) | 353 |
| ScrFI | CCNGG | 2 cut(s) | 356, 590 |
| SduI | GDGCHC | 1 cut(s) | 12 |
| SfaNI | GCATC | 2 cut(s) | 340, 494 |
| SfcI | CTRYAG | 1 cut(s) | 225 |
| Sfr274I | CTCGAG | 1 cut(s) | 615 |
| SfuI | TTCGAA | 1 cut(s) | 110 |
| SlaI | CTCGAG | 1 cut(s) | 615 |
| SmlI | CTYRAG | 1 cut(s) | 615 |
| SmoI | CTYRAG | 1 cut(s) | 615 |
| Sse9I | AATT | 7 cut(s) | 113, 123, 606, 651, 661, 834, 854 |
| SsiI | CCGC | 1 cut(s) | 399 |
| SspMI | CTAG | 1 cut(s) | 582 |
| StyD4I | CCNGG | 2 cut(s) | 354, 588 |
| StyI | CCWWGG | 2 cut(s) | 255, 505 |
| TaaI | ACNGT | 1 cut(s) | 466 |
| TaiI | ACGT | 1 cut(s) | 9 |
| TaqI | TCGA | 3 cut(s) | 110, 616, 753 |
| TasI | AATT | 7 cut(s) | 113, 123, 606, 651, 661, 834, 854 |
| TauI | GCSGC | 1 cut(s) | 402 |
| TfiI | GAWTC | 1 cut(s) | 559 |
| Tru1I | TTAA | 2 cut(s) | 126, 387 |
| Tru9I | TTAA | 2 cut(s) | 126, 387 |
| TscAI | CASTG | 3 cut(s) | 400, 415, 673 |
| TseFI | GTSAC | 2 cut(s) | 171, 643 |
| TseI | GCWGC | 2 cut(s) | 337, 482 |
| Tsp45I | GTSAC | 2 cut(s) | 171, 643 |
| TspDTI | ATGAA | 3 cut(s) | 373, 551, 866 |
| TspGWI | ACGGA | 2 cut(s) | 565, 783 |
| TspRI | CASTG | 3 cut(s) | 400, 415, 673 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 573 |
| XapI | RAATTY | 5 cut(s) | 113, 606, 651, 661, 854 |
| XhoI | CTCGAG | 1 cut(s) | 615 |
| XmnI | GAANNNNTTC | 1 cut(s) | 655 |
| XspI | CTAG | 1 cut(s) | 582 |
| Zsp2I | ATGCAT | 1 cut(s) | 630 |