FvH4_3g11210

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013478
Physical Location & Seq
Forward (+)
6601345 .. 6603839
2495 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11210.t1

Sequence Viewer

Length: 891 bp
ATGGACGTTCTCTCAGTCTCGTCCCCTCTCTTCTCCTCAACCCCCAAGCTCTCCCACACCTTCTCCCCAAAACCCATCTCCCTCTTCCCCTCTTCCTCATCTTCACGCCTCCCCACCATCAAATCCGTCTCTCTCCAAACCCCAAAACCCTCCTTCTCGTTCTCCAAGGCCCACTCAACTAACCCTTCCGTTCTTCTCAGCTCCGCGCCCCAGACGCCGGCGACGGCCATGAGAGGCGCCGAGGGCGACGCCATGGGGCTGCTGCTGAGGGAGAGGATTGTCTTTTTGGGTAGTAGTATTGATGACTTTGTGGCTGACTCTATTATCAGCCAGCTGCTTCTGTTGGATGCTCAGGACCCCAAGAAGGATATTAAGCTCTTTATTAACTCCACTGGGGGCTCTCTCAGTGCCACAATGGCCATATATGATGTCGTTCAGCTTGTGAGGGCTGATGTCTCTACAATTGCGCTCGGCATTGCAGCATCTACAGCTTCAATAATCCTTGGTGGTGGCACCAAAGGCAAGCGTTTTGCAATGCCCAATACACGGGTTATGATTCATCAACCTCTTGGAGGAGCTAGTGGCCAGGCAATAGATGTAGAAATTCAAGCTAGAGAAGTGATGCACAATAAAGACAATGTCACAAGAATTATCTCAAATGTTACTGGTCGTTCATATGAGCAAGTTGAAAAAGATATTGACAGAGATCGCTACATGTCCCCCATAGAAGCAGTAGAATATGGAATAATTGACGGAGTTATTGATGGAGATAGCATTCTTCCTCTGGAGCCAGTCCCAGACAAGGTAAAACCAAGAATGAGTTATGAGGAGATTAGTAAAGATCCAATGAAGTTCTTGACACCAGACGTCCCTGATGACGAGATATATTAG

Protein Analysis

297

Amino Acids

31.9

Weight (kDa)

5.3

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 83 - 255 3.2e-72 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45390
fragaria_vesca FvH4_3g11210 FvH4_3g11210
malus_domestica MD05G1265700.v1.1
prunus_persica Prupe.4G099800_v2.0.a1
pyrus_communis pycom05g24980 pycom10g20380
rosa_chinensis RchiOBHm_Chr5g0018161
rosa_laevigata RLG00000032342
rosa_multiflora Rmu_sc0006594.1_g000017 Rmu_sc0013020.1_g000003
rosa_roxburghii Rroxscaffold_1G00059490
rosa_rugosa Rorug05G0040800
rosa_samantha Rh5AG133700 Rh5BG132200 Rh5CG144400 Rh5DG134100
rosa_wichuraiana Rw5G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 870
AccB1I GGYRCC 2 cut(s) 236, 512
AccII CGCG 1 cut(s) 206
AciI CCGC 1 cut(s) 204
AclWI GGATC 1 cut(s) 836
AcoI YGGCCR 3 cut(s) 225, 417, 583
AcsI RAATTY 1 cut(s) 603
AcyI GRCGYC 4 cut(s) 215, 237, 249, 867
AfiI CCNNNNNNNGG 5 cut(s) 217, 364, 546, 572, 802
AflIII ACRYGT 1 cut(s) 714
AgsI TTSAA 3 cut(s) 495, 608, 689
AjnI CCWGG 1 cut(s) 585
AluBI AGCT 8 cut(s) 49, 201, 334, 376, 439, 491, 578, 611
AluI AGCT 8 cut(s) 49, 201, 334, 376, 439, 491, 578, 611
Alw26I GTCTC 3 cut(s) 22, 133, 460
AlwI GGATC 1 cut(s) 836
AoxI GGCC 4 cut(s) 168, 225, 417, 583
ApeKI GCWGC 4 cut(s) 259, 262, 334, 479
ApoI RAATTY 1 cut(s) 603
AspLEI GCGC 3 cut(s) 208, 239, 469
AspS9I GGNCC 2 cut(s) 169, 355
AvaII GGWCC 1 cut(s) 355
BalI TGGCCA 2 cut(s) 419, 585
BanI GGYRCC 2 cut(s) 236, 512
BanII GRGCYC 1 cut(s) 401
BbvCI CCTCAGC 1 cut(s) 266
BbvI GCAGC 4 cut(s) 246, 249, 321, 491
BccI CCATC 3 cut(s) 83, 125, 758
BceAI ACGGC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 587
BcoDI GTCTC 3 cut(s) 22, 133, 460
BfaI CTAG 2 cut(s) 579, 612
BfmI CTRYAG 1 cut(s) 486
BfoI RGCGCY 1 cut(s) 240
BglI GCCNNNNNGGC 1 cut(s) 416
BisI GCNGC 4 cut(s) 260, 263, 335, 480
BlsI GCNGC 4 cut(s) 261, 264, 336, 481
Bme1390I CCNGG 1 cut(s) 587
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 2 cut(s) 169, 355
BmiI GGNNCC 4 cut(s) 238, 357, 514, 789
BmrFI CCNGG 1 cut(s) 587
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 3 cut(s) 337, 491, 612
BmuI ACTGGG 1 cut(s) 402
BpmI CTGGAG 1 cut(s) 806
Bpu10I CCTNAGC 2 cut(s) 266, 351
BsaHI GRCGYC 4 cut(s) 215, 237, 249, 867
BsaJI CCNNGG 4 cut(s) 165, 240, 252, 502
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 5 cut(s) 217, 364, 546, 572, 802
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 3 cut(s) 397, 670, 791
Bse3DI GCAATG 2 cut(s) 474, 540
BseBI CCWGG 1 cut(s) 587
BseDI CCNNGG 4 cut(s) 165, 240, 252, 502
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 5 cut(s) 217, 364, 546, 572, 802
BseMI GCAATG 2 cut(s) 474, 540
BseMII CTCAG 5 cut(s) 27, 211, 257, 365, 418
BseNI ACTGG 3 cut(s) 397, 670, 791
BseRI GAGGAG 3 cut(s) 25, 588, 842
BseXI GCAGC 4 cut(s) 246, 249, 321, 491
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 4 cut(s) 170, 227, 419, 585
BshNI GGYRCC 2 cut(s) 236, 512
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 4 cut(s) 7, 703, 779, 854
BslI CCNNNNNNNGG 5 cut(s) 217, 364, 546, 572, 802
BsmAI GTCTC 3 cut(s) 22, 133, 460
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 4 cut(s) 7, 703, 779, 854
BsmI GAATGC 1 cut(s) 774
BsnI GGCC 4 cut(s) 170, 227, 419, 585
Bsp1286I GDGCHC 1 cut(s) 401
Bsp143I GATC 2 cut(s) 706, 841
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 1 cut(s) 204
BspANI GGCC 4 cut(s) 170, 227, 419, 585
BspCNI CTCAG 5 cut(s) 26, 210, 258, 364, 417
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 4 cut(s) 238, 357, 514, 789
BspPI GGATC 1 cut(s) 836
BspT107I GGYRCC 2 cut(s) 236, 512
BsrDI GCAATG 2 cut(s) 474, 540
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 3 cut(s) 397, 670, 791
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 4 cut(s) 165, 240, 252, 502
BssMI GATC 2 cut(s) 706, 841
BssNI GRCGYC 4 cut(s) 215, 237, 249, 867
BssT1I CCWWGG 3 cut(s) 165, 252, 502
Bst2UI CCWGG 1 cut(s) 587
Bst6I CTCTTC 3 cut(s) 35, 89, 97
BstACI GRCGYC 4 cut(s) 215, 237, 249, 867
BstC8I GCNNGC 3 cut(s) 219, 332, 524
BstDEI CTNAG 5 cut(s) 13, 197, 266, 351, 404
BstDSI CCRYGG 1 cut(s) 252
BstENI CCTNNNNNAGG 1 cut(s) 570
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 1 cut(s) 206
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 3 cut(s) 208, 239, 469
BstKTI GATC 2 cut(s) 709, 844
BstMAI GTCTC 3 cut(s) 22, 133, 460
BstMBI GATC 2 cut(s) 706, 841
BstMWI GCNNNNNNNGC 5 cut(s) 214, 243, 416, 488, 519
BstNI CCWGG 1 cut(s) 587
BstNSI RCATGY 1 cut(s) 718
BstSCI CCNGG 1 cut(s) 585
BstSFI CTRYAG 1 cut(s) 486
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 4 cut(s) 246, 249, 321, 491
BstX2I RGATCY 1 cut(s) 841
BstYI RGATCY 1 cut(s) 841
BsuRI GGCC 4 cut(s) 170, 227, 419, 585
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 390, 412
Cac8I GCNNGC 3 cut(s) 219, 332, 524
CfoI GCGC 3 cut(s) 208, 239, 469
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 2 cut(s) 169, 355
CseI GACGC 2 cut(s) 223, 257
CviAII CATG 3 cut(s) 229, 253, 715
DdeI CTNAG 5 cut(s) 13, 197, 266, 351, 404
DinI GGCGCC 1 cut(s) 238
DpnI GATC 2 cut(s) 708, 843
DpnII GATC 2 cut(s) 706, 841
EaeI YGGCCR 3 cut(s) 225, 417, 583
Eam1104I CTCTTC 3 cut(s) 35, 89, 97
EarI CTCTTC 3 cut(s) 35, 89, 97
Eco130I CCWWGG 3 cut(s) 165, 252, 502
Eco24I GRGCYC 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 355
EcoNI CCTNNNNNAGG 1 cut(s) 570
EcoO109I RGGNCCY 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 585
EcoT14I CCWWGG 3 cut(s) 165, 252, 502
EcoT38I GRGCYC 1 cut(s) 401
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
ErhI CCWWGG 3 cut(s) 165, 252, 502
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 3 cut(s) 232, 256, 718
FaqI GGGAC 4 cut(s) 7, 703, 779, 854
FatI CATG 3 cut(s) 228, 252, 714
FauNDI CATATG 1 cut(s) 676
Fnu4HI GCNGC 4 cut(s) 260, 263, 335, 480
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 401
Fsp4HI GCNGC 4 cut(s) 260, 263, 335, 480
FspBI CTAG 2 cut(s) 579, 612
GlaI GCGC 3 cut(s) 207, 238, 468
GluI GCNGC 4 cut(s) 260, 263, 335, 480
GsuI CTGGAG 1 cut(s) 806
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 4 cut(s) 170, 227, 419, 585
HapII CCGG 1 cut(s) 218
HgaI GACGC 2 cut(s) 223, 257
HhaI GCGC 3 cut(s) 208, 239, 469
Hin1I GRCGYC 4 cut(s) 215, 237, 249, 867
Hin1II CATG 3 cut(s) 232, 256, 718
Hin6I GCGC 3 cut(s) 206, 237, 467
HinP1I GCGC 3 cut(s) 206, 237, 467
HinfI GANTC 2 cut(s) 317, 556
HpaII CCGG 1 cut(s) 218
Hpy188III TCNNGA 3 cut(s) 353, 785, 856
Hpy99I CGWCG 2 cut(s) 226, 251
HpyAV CCTTC 4 cut(s) 70, 163, 195, 358
HpyCH4IV ACGT 2 cut(s) 6, 867
HpyCH4V TGCA 3 cut(s) 479, 533, 625
HpyF10VI GCNNNNNNNGC 5 cut(s) 214, 243, 416, 488, 519
HpyF3I CTNAG 5 cut(s) 13, 197, 266, 351, 404
HpySE526I ACGT 2 cut(s) 6, 867
Hsp92I GRCGYC 4 cut(s) 215, 237, 249, 867
Hsp92II CATG 3 cut(s) 232, 256, 718
HspAI GCGC 3 cut(s) 206, 237, 467
KasI GGCGCC 1 cut(s) 236
KroI GCCGGC 1 cut(s) 217
KroNI GCCGGC 1 cut(s) 219
Kzo9I GATC 2 cut(s) 706, 841
LmnI GCTCC 3 cut(s) 206, 575, 787
Lsp1109I GCAGC 4 cut(s) 246, 249, 321, 491
LweI GCATC 3 cut(s) 337, 491, 612
MaeI CTAG 2 cut(s) 579, 612
MaeII ACGT 2 cut(s) 6, 867
MaeIII GTNAC 2 cut(s) 640, 661
MalI GATC 2 cut(s) 708, 843
MboI GATC 2 cut(s) 706, 841
MboII GAAGA 6 cut(s) 22, 76, 84, 93, 185, 770
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 1 cut(s) 841
MhlI GDGCHC 1 cut(s) 401
MlsI TGGCCA 2 cut(s) 419, 585
MluCI AATT 4 cut(s) 462, 603, 648, 747
MluNI TGGCCA 2 cut(s) 419, 585
Mly113I GGCGCC 1 cut(s) 237
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 324
Mox20I TGGCCA 2 cut(s) 419, 585
MreI CGCCGGCG 1 cut(s) 217
MroNI GCCGGC 1 cut(s) 217
MscI TGGCCA 2 cut(s) 419, 585
MseI TTAA 2 cut(s) 372, 384
Msp20I TGGCCA 2 cut(s) 419, 585
MspA1I CMGCKG 1 cut(s) 334
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 587
MunI CAATTG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 774
MvaI CCWGG 1 cut(s) 587
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 5 cut(s) 214, 243, 416, 488, 519
NaeI GCCGGC 1 cut(s) 219
NarI GGCGCC 1 cut(s) 237
NcoI CCATGG 1 cut(s) 252
NdeI CATATG 1 cut(s) 676
NdeII GATC 2 cut(s) 706, 841
NgoMIV GCCGGC 1 cut(s) 217
NlaIII CATG 3 cut(s) 232, 256, 718
NlaIV GGNNCC 4 cut(s) 238, 357, 514, 789
NmeAIII GCCGAG 2 cut(s) 265, 450
NmuCI GTSAC 1 cut(s) 640
NspI RCATGY 1 cut(s) 718
PciI ACATGT 1 cut(s) 714
PctI GAATGC 1 cut(s) 774
PdiI GCCGGC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 556
PflFI GACNNNGTC 1 cut(s) 638
PkrI GCNGC 4 cut(s) 261, 264, 336, 481
PleI GAGTC 1 cut(s) 311
PluTI GGCGCC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 311
PpuMI RGGWCCY 1 cut(s) 355
PscI ACATGT 1 cut(s) 714
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 585
PspGI CCWGG 1 cut(s) 585
PspN4I GGNNCC 4 cut(s) 238, 357, 514, 789
PspPI GGNCC 2 cut(s) 169, 355
PspPPI RGGWCCY 1 cut(s) 355
PsuI RGATCY 1 cut(s) 841
PsyI GACNNNGTC 1 cut(s) 638
PvuII CAGCTG 1 cut(s) 334
SaqAI TTAA 2 cut(s) 372, 384
SatI GCNGC 4 cut(s) 260, 263, 335, 480
Sau3AI GATC 2 cut(s) 706, 841
Sau96I GGNCC 2 cut(s) 169, 355
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 587
SduI GDGCHC 1 cut(s) 401
SfaNI GCATC 3 cut(s) 337, 491, 612
SfcI CTRYAG 1 cut(s) 486
SfoI GGCGCC 1 cut(s) 238
SgrAI CRCCGGYG 1 cut(s) 217
SinI GGWCC 1 cut(s) 355
Sse9I AATT 4 cut(s) 462, 603, 648, 747
SsiI CCGC 1 cut(s) 204
SspDI GGCGCC 1 cut(s) 236
SspMI CTAG 2 cut(s) 579, 612
StyD4I CCNGG 1 cut(s) 585
StyI CCWWGG 3 cut(s) 165, 252, 502
TaiI ACGT 2 cut(s) 9, 870
TasI AATT 4 cut(s) 462, 603, 648, 747
TfiI GAWTC 1 cut(s) 556
Tru1I TTAA 2 cut(s) 372, 384
Tru9I TTAA 2 cut(s) 372, 384
TscAI CASTG 2 cut(s) 397, 412
TseFI GTSAC 1 cut(s) 640
TseI GCWGC 4 cut(s) 259, 262, 334, 479
Tsp45I GTSAC 1 cut(s) 640
TspDTI ATGAA 3 cut(s) 548, 663, 863
TspGWI ACGGA 3 cut(s) 115, 178, 768
TspRI CASTG 2 cut(s) 397, 412
Tth111I GACNNNGTC 1 cut(s) 638
VpaK11BI GGWCC 1 cut(s) 355
XagI CCTNNNNNAGG 1 cut(s) 570
XapI RAATTY 1 cut(s) 603
XceI RCATGY 1 cut(s) 718
XspI CTAG 2 cut(s) 579, 612
ZraI GACGTC 1 cut(s) 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.