AT5G46230

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016008
Physical Location & Seq
Reverse (-)
18742272 .. 18743077
806 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G46230.1

Sequence Viewer

Length: 432 bp
ATGTCGTCTCAAGAAACGAAATCAGATCAAAGAGAAGGAGCAGAGATCTGCAATGGCGAATCAAACTGCAAACAGAAAGCCAAAGAGATTTTATCAACCATGAATCTACCCAAAGGTCTTCTTCCTCTAGACAACATGACAGAGATCGGTCACAACAAATCAACCGGTTATGTCTGGATCAAGATCAAGAACAAGGTTCAACATCGGTTTAAAGCCATTGGACGAAACGTATCTTACGATTCGGAGGTTACTGCGATCCTTGAGAATCGTCGGATGAGTCAGCTCACGGGAATCAAGAGCAAAGAGATTTTGATTTGGGTTACGATCTCTGAGATCTTTGTTAATCATCAAGATCCGACTCAAATCACTTTTGCTAATCCTACGGGACTATCACGTACTTTCCCCGTCACTGCTTTTGAAGAAGACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

143

Amino Acids

16.17

Weight (kDa)

6.84

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 28 - 140 6.7e-31 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46230
fragaria_vesca FvH4_3g05580
malus_domestica MD05G1284100.v1.1 MD10G1262400.v1.1
prunus_persica Prupe.4G080300_v2.0.a1
pyrus_communis pycom05g26320
rosa_chinensis RchiOBHm_Chr5g0014081
rosa_laevigata RLG00000032080
rosa_multiflora Rmu_sc0007767.1_g000010
rosa_roxburghii Rroxscaffold_1G00062540
rosa_rugosa Rorug05G0015500
rosa_samantha Rh5AG109500 Rh5BG106300 Rh5CG118000
rosa_wichuraiana Rw5G009560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 185, 250, 347
AfaI GTAC 1 cut(s) 397
AgeI ACCGGT 1 cut(s) 164
AgsI TTSAA 2 cut(s) 200, 419
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 3 cut(s) 185, 250, 347
AsiGI ACCGGT 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 1 cut(s) 128
BglII AGATCT 2 cut(s) 45, 333
BpiI GAAGAC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 281
BsaAI YACGTR 1 cut(s) 395
BsaBI GATNNNNATC 1 cut(s) 182
BsaWI WCCGGW 1 cut(s) 164
Bse118I RCCGGY 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 58
Bse8I GATNNNNATC 1 cut(s) 182
BseGI GGATG 1 cut(s) 279
BseJI GATNNNNATC 1 cut(s) 182
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 321
BshTI ACCGGT 1 cut(s) 164
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 399
BsmAI GTCTC 1 cut(s) 12
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 399
Bsp143I GATC 9 cut(s) 25, 45, 144, 177, 183, 255, 324, 333, 352
BspCNI CTCAG 1 cut(s) 322
BspPI GGATC 3 cut(s) 185, 250, 347
BsrDI GCAATG 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 164
BssMI GATC 9 cut(s) 25, 45, 144, 177, 183, 255, 324, 333, 352
BstBAI YACGTR 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 9 cut(s) 28, 48, 147, 180, 186, 258, 327, 336, 355
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 9 cut(s) 25, 45, 144, 177, 183, 255, 324, 333, 352
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 3 cut(s) 45, 333, 352
BstYI RGATCY 3 cut(s) 45, 333, 352
BtsCI GGATG 1 cut(s) 279
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 1 cut(s) 408
Cfr10I RCCGGY 1 cut(s) 164
Csp6I GTAC 1 cut(s) 396
CspAI ACCGGT 1 cut(s) 164
CviAII CATG 2 cut(s) 100, 136
CviJI RGCY 3 cut(s) 80, 215, 283
CviKI_1 RGCY 3 cut(s) 80, 215, 283
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 1 cut(s) 330
DpnI GATC 9 cut(s) 27, 47, 146, 179, 185, 257, 326, 335, 354
DpnII GATC 9 cut(s) 25, 45, 144, 177, 183, 255, 324, 333, 352
DraI TTTAAA 1 cut(s) 211
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 2 cut(s) 103, 139
FaiI YATR 3 cut(s) 101, 137, 171
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FaqI GGGAC 1 cut(s) 399
FatI CATG 2 cut(s) 99, 135
FokI GGATG 1 cut(s) 286
FspBI CTAG 1 cut(s) 128
HapII CCGG 1 cut(s) 165
Hin1II CATG 2 cut(s) 103, 139
HinfI GANTC 7 cut(s) 59, 103, 239, 265, 277, 291, 358
HpaII CCGG 1 cut(s) 165
Hpy188I TCNGA 5 cut(s) 25, 244, 273, 331, 357
Hpy188III TCNNGA 7 cut(s) 11, 128, 175, 181, 187, 295, 350
Hpy99I CGWCG 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 29
HpyCH4IV ACGT 2 cut(s) 228, 394
HpyCH4V TGCA 2 cut(s) 51, 69
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 2 cut(s) 228, 394
Hsp92II CATG 2 cut(s) 103, 139
Kzo9I GATC 9 cut(s) 25, 45, 144, 177, 183, 255, 324, 333, 352
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 2 cut(s) 160, 178
MaeI CTAG 1 cut(s) 128
MaeII ACGT 2 cut(s) 228, 394
MaeIII GTNAC 4 cut(s) 149, 247, 319, 406
MalI GATC 9 cut(s) 27, 47, 146, 179, 185, 257, 326, 335, 354
MboI GATC 9 cut(s) 25, 45, 144, 177, 183, 255, 324, 333, 352
MboII GAAGA 3 cut(s) 110, 113, 431
MflI RGATCY 3 cut(s) 45, 333, 352
MlyI GAGTC 2 cut(s) 286, 352
MmeI TCCRAC 2 cut(s) 251, 380
MnlI CCTC 2 cut(s) 135, 238
MseI TTAA 2 cut(s) 210, 342
MspI CCGG 1 cut(s) 165
NdeII GATC 9 cut(s) 25, 45, 144, 177, 183, 255, 324, 333, 352
NlaIII CATG 2 cut(s) 103, 139
NmuCI GTSAC 2 cut(s) 149, 406
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 5 cut(s) 59, 103, 239, 265, 291
PinAI ACCGGT 1 cut(s) 164
PleI GAGTC 2 cut(s) 285, 352
PpsI GAGTC 2 cut(s) 285, 352
Ppu21I YACGTR 1 cut(s) 395
PsuI RGATCY 3 cut(s) 45, 333, 352
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
SaqAI TTAA 2 cut(s) 210, 342
Sau3AI GATC 9 cut(s) 25, 45, 144, 177, 183, 255, 324, 333, 352
SchI GAGTC 2 cut(s) 286, 352
SetI ASST 6 cut(s) 118, 198, 231, 249, 285, 397
SmlI CTYRAG 2 cut(s) 9, 260
SmoI CTYRAG 2 cut(s) 9, 260
SspMI CTAG 1 cut(s) 128
TaiI ACGT 2 cut(s) 231, 397
TaqII GACCGA 1 cut(s) 137
TfiI GAWTC 5 cut(s) 59, 103, 239, 265, 291
Tru1I TTAA 2 cut(s) 210, 342
Tru9I TTAA 2 cut(s) 210, 342
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 2 cut(s) 149, 406
Tsp45I GTSAC 2 cut(s) 149, 406
TspDTI ATGAA 1 cut(s) 116
TspRI CASTG 1 cut(s) 415
XbaI TCTAGA 1 cut(s) 127
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.