Rroxscaffold_1G00062540

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016008
Physical Location & Seq
Forward (+)
84661627 .. 84662094
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062540.1

Sequence Viewer

Length: 468 bp
ATGTCAAGCCAGCAACTAATCGCGACCCACAGAGACGGCGCCGAGATCCATCACGGCGAAGACGTATGCAAGCAAAAGTCCCACCAGCTTCTCGAGAAGATGCATCTGCCGTGCGGCCTCCTCCCTCTAGACGACGTAGTCGAGTTCGGCTACAACCCCACCTCGGGGTTCGTGTGGCTGAAGCAGAAGAAGCGAAAGGAGCACCGGTTCCATGCCGTGGGACGCACGGTTTCATACGACACCGAGGTCCTGGGGTTTGTGGAGGAGCATCGGATGAGGCGTCTCAGCGGGGTCAAGAGTAAGGAGATTTTGATCTGGGTGTCCATTTCGGATATCTATGTGGATCCGAGTACAGATCCCGATAAGATCACGTTTGCCAACGGCACGGGAATCTCGAGGTCGTTCCCGATCACGGCGTTTCAACTTGAAGAAGGTGGAGATGGAAATGGTAATAATGGCAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

155

Amino Acids

17.42

Weight (kDa)

6.7

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 28 - 141 2.7e-30 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46230
fragaria_vesca FvH4_3g05580
malus_domestica MD05G1284100.v1.1 MD10G1262400.v1.1
prunus_persica Prupe.4G080300_v2.0.a1
pyrus_communis pycom05g26320
rosa_chinensis RchiOBHm_Chr5g0014081
rosa_laevigata RLG00000032080
rosa_multiflora Rmu_sc0007767.1_g000010
rosa_roxburghii Rroxscaffold_1G00062540
rosa_rugosa Rorug05G0015500
rosa_samantha Rh5AG109500 Rh5BG106300 Rh5CG118000
rosa_wichuraiana Rw5G009560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 137, 245
AccB1I GGYRCC 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 217
AccII CGCG 1 cut(s) 23
AciI CCGC 2 cut(s) 114, 288
AclWI GGATC 4 cut(s) 40, 338, 350, 351
AcuI CTGAAG 1 cut(s) 200
AcyI GRCGYC 2 cut(s) 39, 280
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 5 cut(s) 163, 164, 165, 217, 412
AgeI ACCGGT 1 cut(s) 204
AgsI TTSAA 2 cut(s) 422, 428
AjnI CCWGG 1 cut(s) 249
AloI GAACNNNNNNTCC 2 cut(s) 191, 223
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 2 cut(s) 27, 287
AlwI GGATC 4 cut(s) 40, 338, 350, 351
Ama87I CYCGRG 3 cut(s) 92, 163, 394
AoxI GGCC 1 cut(s) 115
AsiGI ACCGGT 1 cut(s) 204
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 247
AvaI CYCGRG 3 cut(s) 92, 163, 394
AvaII GGWCC 1 cut(s) 247
BamHI GGATCC 1 cut(s) 343
BanI GGYRCC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 2 cut(s) 57, 434
BceAI ACGGC 6 cut(s) 52, 70, 94, 200, 397, 429
BciT130I CCWGG 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 27, 287
BfaI CTAG 1 cut(s) 128
BfoI RGCGCY 1 cut(s) 42
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 3 cut(s) 92, 163, 394
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 3 cut(s) 40, 209, 345
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 3 cut(s) 90, 112, 277
BpiI GAAGAC 1 cut(s) 66
BsaBI GATNNNNATC 1 cut(s) 311
BsaHI GRCGYC 2 cut(s) 39, 280
BsaJI CCNNGG 4 cut(s) 162, 216, 243, 250
BsaWI WCCGGW 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 5 cut(s) 163, 164, 165, 217, 412
Bse118I RCCGGY 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 311
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 4 cut(s) 162, 216, 243, 250
BseGI GGATG 1 cut(s) 279
BseJI GATNNNNATC 1 cut(s) 311
BseLI CCNNNNNNNGG 5 cut(s) 163, 164, 165, 217, 412
BseMII CTCAG 1 cut(s) 298
BseRI GAGGAG 2 cut(s) 110, 278
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 117
BshNI GGYRCC 1 cut(s) 38
BshTI ACCGGT 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 3 cut(s) 92, 163, 394
BsiSI CCGG 1 cut(s) 205
BslFI GGGAC 2 cut(s) 64, 234
BslI CCNNNNNNNGG 5 cut(s) 163, 164, 165, 217, 412
BsmAI GTCTC 2 cut(s) 27, 287
BsmBI CGTCTC 2 cut(s) 27, 287
BsmFI GGGAC 2 cut(s) 64, 234
BsnI GGCC 1 cut(s) 117
BsoBI CYCGRG 3 cut(s) 92, 163, 394
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 6 cut(s) 45, 312, 343, 355, 366, 408
Bsp68I TCGCGA 1 cut(s) 23
BspACI CCGC 2 cut(s) 114, 288
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 297
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 3 cut(s) 40, 209, 345
BspPI GGATC 4 cut(s) 40, 338, 350, 351
BspT107I GGYRCC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 4 cut(s) 162, 216, 243, 250
BssMI GATC 6 cut(s) 45, 312, 343, 355, 366, 408
BssNI GRCGYC 2 cut(s) 39, 280
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 229
BstACI GRCGYC 2 cut(s) 39, 280
BstC8I GCNNGC 2 cut(s) 11, 71
BstDEI CTNAG 1 cut(s) 284
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 279
BstFNI CGCG 1 cut(s) 23
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 6 cut(s) 48, 315, 346, 358, 369, 411
BstMAI GTCTC 2 cut(s) 27, 287
BstMBI GATC 6 cut(s) 45, 312, 343, 355, 366, 408
BstMWI GCNNNNNNNGC 2 cut(s) 190, 199
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstUI CGCG 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 3 cut(s) 45, 343, 355
BstYI RGATCY 3 cut(s) 45, 343, 355
BsuRI GGCC 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 279
BtuMI TCGCGA 1 cut(s) 23
Cac8I GCNNGC 2 cut(s) 11, 71
CfoI GCGC 1 cut(s) 41
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 247
CseI GACGC 2 cut(s) 231, 269
Csp6I GTAC 1 cut(s) 351
CspAI ACCGGT 1 cut(s) 204
CviAII CATG 1 cut(s) 212
CviJI RGCY 5 cut(s) 9, 88, 117, 150, 178
CviKI_1 RGCY 5 cut(s) 9, 88, 117, 150, 178
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 1 cut(s) 284
DinI GGCGCC 1 cut(s) 40
DpnI GATC 6 cut(s) 47, 314, 345, 357, 368, 410
DpnII GATC 6 cut(s) 45, 312, 343, 355, 366, 408
DrdI GACNNNNNNGTC 2 cut(s) 137, 245
DseDI GACNNNNNNGTC 2 cut(s) 137, 245
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 200
Eco88I CYCGRG 3 cut(s) 92, 163, 394
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 249
EcoRV GATATC 1 cut(s) 334
EcoT22I ATGCAT 1 cut(s) 105
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
Esp3I CGTCTC 2 cut(s) 27, 287
FaeI CATG 1 cut(s) 215
FaiI YATR 4 cut(s) 67, 213, 235, 339
FaqI GGGAC 2 cut(s) 64, 234
FatI CATG 1 cut(s) 211
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 1 cut(s) 128
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 115
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 1 cut(s) 117
HapII CCGG 1 cut(s) 205
HgaI GACGC 2 cut(s) 231, 269
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 2 cut(s) 39, 280
Hin1II CATG 1 cut(s) 215
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HinfI GANTC 1 cut(s) 390
HpaII CCGG 1 cut(s) 205
Hpy188I TCNGA 3 cut(s) 273, 331, 348
Hpy188III TCNNGA 8 cut(s) 22, 92, 94, 128, 295, 359, 394, 406
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 3 cut(s) 63, 135, 371
HpyCH4V TGCA 2 cut(s) 69, 103
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 199
HpyF3I CTNAG 1 cut(s) 284
HpySE526I ACGT 3 cut(s) 63, 135, 371
Hsp92I GRCGYC 2 cut(s) 39, 280
Hsp92II CATG 1 cut(s) 215
HspAI GCGC 1 cut(s) 39
KasI GGCGCC 1 cut(s) 38
Kzo9I GATC 6 cut(s) 45, 312, 343, 355, 366, 408
LmnI GCTCC 2 cut(s) 199, 265
LpnPI CCDG 6 cut(s) 23, 98, 218, 236, 263, 301
LweI GCATC 3 cut(s) 90, 112, 277
MaeI CTAG 1 cut(s) 128
MaeII ACGT 3 cut(s) 63, 135, 371
MalI GATC 6 cut(s) 47, 314, 345, 357, 368, 410
MboI GATC 6 cut(s) 45, 312, 343, 355, 366, 408
MboII GAAGA 4 cut(s) 71, 109, 199, 440
MflI RGATCY 3 cut(s) 45, 343, 355
MhlI GDGCHC 1 cut(s) 204
Mly113I GGCGCC 1 cut(s) 39
MnlI CCTC 8 cut(s) 128, 131, 135, 172, 238, 256, 270, 390
Mph1103I ATGCAT 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 288
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 251
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 190, 199
NarI GGCGCC 1 cut(s) 39
NdeII GATC 6 cut(s) 45, 312, 343, 355, 366, 408
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 3 cut(s) 40, 209, 345
NmeAIII GCCGAG 1 cut(s) 67
NruI TCGCGA 1 cut(s) 23
NsiI ATGCAT 1 cut(s) 105
PaeR7I CTCGAG 2 cut(s) 92, 394
PcsI WCGNNNNNNNCGW 4 cut(s) 60, 138, 277, 392
PfeI GAWTC 1 cut(s) 390
PflFI GACNNNGTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 217
PinAI ACCGGT 1 cut(s) 204
PkrI GCNGC 1 cut(s) 116
PluTI GGCGCC 1 cut(s) 42
PpuMI RGGWCCY 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 3 cut(s) 40, 209, 345
PspPI GGNCC 1 cut(s) 247
PspPPI RGGWCCY 1 cut(s) 247
PsuI RGATCY 3 cut(s) 45, 343, 355
PsyI GACNNNGTC 1 cut(s) 137
RruI TCGCGA 1 cut(s) 23
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 6 cut(s) 45, 312, 343, 355, 366, 408
Sau96I GGNCC 1 cut(s) 247
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 1 cut(s) 204
SetI ASST 8 cut(s) 66, 90, 138, 164, 249, 374, 401, 436
SfaNI GCATC 3 cut(s) 90, 112, 277
SfoI GGCGCC 1 cut(s) 40
Sfr274I CTCGAG 2 cut(s) 92, 394
SinI GGWCC 1 cut(s) 247
SlaI CTCGAG 2 cut(s) 92, 394
SmlI CTYRAG 2 cut(s) 92, 394
SmoI CTYRAG 2 cut(s) 92, 394
SsiI CCGC 2 cut(s) 114, 288
SspDI GGCGCC 1 cut(s) 38
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 3 cut(s) 66, 138, 374
TaqI TCGA 3 cut(s) 93, 141, 395
TatI WGTACW 1 cut(s) 350
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 1 cut(s) 390
TspDTI ATGAA 1 cut(s) 222
Tth111I GACNNNGTC 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 247
XbaI TCTAGA 1 cut(s) 127
XhoI CTCGAG 2 cut(s) 92, 394
XspI CTAG 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.