Prupe.4G080300_v2.0.a1

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016008
Physical Location & Seq
Reverse (-)
3896455 .. 3896973
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G080300.1

Sequence Viewer

Length: 459 bp
ATGTCAGGCCAACAAATCGATAGCCACAGAGAAGACGCCGAGATCTATCACGGCGAAGCCCTATGCAAGCAGAAGTCCCACGAGTTGCTCGACAAAATGAGCCTGCCGCGTGCTCTCCTGCCCTTAGACGATGTCCTAGAGTTCGGTTACAACCACACCTCCGGATTCGTATGGCTCAAGCAGAAGAAGAAGAAAGAGCACCGGTTCCAGGCCATTGGCAAAATGGTGTCGTACGACACGGAGGTGACGGGCTTCGTCGAAGAGCATCGGATGAGGAGGCTCTCTGGGGTCAAAAGTAAGGAGCTTTTGATTTGGGTCTCGATTTCGGATATCTACGTGGACCCGAATTCGAATCCGGATAAGATCACGTTCGCCAACGGCACCGGGATCTCAAGGTCGTTCCCTGTCACGGCCTTTGGGCTTGAAGAAGAAGAGAAGAATGCTGATGGGAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

153

Amino Acids

17.33

Weight (kDa)

6.31

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46230
fragaria_vesca FvH4_3g05580
malus_domestica MD05G1284100.v1.1 MD10G1262400.v1.1
prunus_persica Prupe.4G080300_v2.0.a1
pyrus_communis pycom05g26320
rosa_chinensis RchiOBHm_Chr5g0014081
rosa_laevigata RLG00000032080
rosa_multiflora Rmu_sc0007767.1_g000010
rosa_roxburghii Rroxscaffold_1G00062540
rosa_rugosa Rorug05G0015500
rosa_samantha Rh5AG109500 Rh5BG106300 Rh5CG118000
rosa_wichuraiana Rw5G009560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 380
AccII CGCG 1 cut(s) 109
AccIII TCCGGA 2 cut(s) 161, 355
AciI CCGC 1 cut(s) 107
AclWI GGATC 1 cut(s) 395
AcsI RAATTY 1 cut(s) 346
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 2 cut(s) 208, 409
AgeI ACCGGT 1 cut(s) 201
AgsI TTSAA 1 cut(s) 425
AjnI CCWGG 1 cut(s) 207
AleI CACNNNNGTG 1 cut(s) 242
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw21I GWGCWC 2 cut(s) 115, 201
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 1 cut(s) 395
Aor13HI TCCGGA 2 cut(s) 161, 355
AoxI GGCC 3 cut(s) 7, 210, 411
ApoI RAATTY 1 cut(s) 346
AsiGI ACCGGT 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 340
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 256
AsuII TTCGAA 1 cut(s) 350
AvaII GGWCC 1 cut(s) 340
BanI GGYRCC 1 cut(s) 380
BauI CACGAG 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 2 cut(s) 115, 201
BccI CCATC 1 cut(s) 440
BceAI ACGGC 3 cut(s) 67, 394, 426
BciT130I CCWGG 1 cut(s) 209
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 1 cut(s) 137
BglII AGATCT 1 cut(s) 42
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme1390I CCNGG 2 cut(s) 209, 385
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 3 cut(s) 206, 342, 382
BmrFI CCNGG 2 cut(s) 209, 385
BmsI GCATC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 350
BpuEI CTTGAG 2 cut(s) 161, 376
BpuMI CCSGG 1 cut(s) 385
Bsa29I ATCGAT 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 337
BsaHI GRCGYC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 322
BsaWI WCCGGW 3 cut(s) 161, 201, 355
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 409
Bse118I RCCGGY 1 cut(s) 201
BseAI TCCGGA 2 cut(s) 161, 355
BseBI CCWGG 1 cut(s) 209
BseCI ATCGAT 1 cut(s) 18
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 208, 409
BseRI GAGGAG 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 109
BshFI GGCC 3 cut(s) 9, 212, 413
BshNI GGYRCC 1 cut(s) 380
BshTI ACCGGT 1 cut(s) 201
BshVI ATCGAT 1 cut(s) 18
BsiHKAI GWGCWC 2 cut(s) 115, 201
BsiSI CCGG 4 cut(s) 162, 202, 356, 384
BsiWI CGTACG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 2 cut(s) 208, 409
BsmAI GTCTC 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 61
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 3 cut(s) 9, 212, 413
Bso31I GGTCTC 1 cut(s) 322
Bsp119I TTCGAA 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 115, 201
Bsp13I TCCGGA 2 cut(s) 161, 355
Bsp143I GATC 3 cut(s) 42, 363, 387
BspACI CCGC 1 cut(s) 107
BspANI GGCC 3 cut(s) 9, 212, 413
BspDI ATCGAT 1 cut(s) 18
BspEI TCCGGA 2 cut(s) 161, 355
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 3 cut(s) 206, 342, 382
BspPI GGATC 1 cut(s) 395
BspQI GCTCTTC 1 cut(s) 255
BspT104I TTCGAA 1 cut(s) 350
BspT107I GGYRCC 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 201
BssAI RCCGGY 1 cut(s) 201
BssMI GATC 3 cut(s) 42, 363, 387
BssNI GRCGYC 1 cut(s) 36
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 209
Bst6I CTCTTC 2 cut(s) 255, 426
BstACI GRCGYC 1 cut(s) 36
BstBAI YACGTR 1 cut(s) 337
BstBI TTCGAA 1 cut(s) 350
BstC8I GCNNGC 3 cut(s) 68, 104, 111
BstDEI CTNAG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 109
BstKTI GATC 3 cut(s) 45, 366, 390
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 3 cut(s) 42, 363, 387
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 207, 383
BstUI CGCG 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 2 cut(s) 42, 387
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 2 cut(s) 42, 387
Bsu15I ATCGAT 1 cut(s) 18
BsuRI GGCC 3 cut(s) 9, 212, 413
BsuTUI ATCGAT 1 cut(s) 18
BtsCI GGATG 1 cut(s) 276
Cac8I GCNNGC 3 cut(s) 68, 104, 111
Cfr10I RCCGGY 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 340
ClaI ATCGAT 1 cut(s) 18
CseI GACGC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 232
CspAI ACCGGT 1 cut(s) 201
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 1 cut(s) 124
DpnI GATC 3 cut(s) 44, 365, 389
DpnII GATC 3 cut(s) 42, 363, 387
Eam1104I CTCTTC 2 cut(s) 255, 426
EarI CTCTTC 2 cut(s) 255, 426
Eco31I GGTCTC 1 cut(s) 322
Eco32I GATATC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 340
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 207
EcoRV GATATC 1 cut(s) 331
FaiI YATR 2 cut(s) 64, 172
FaqI GGGAC 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 1 cut(s) 283
Fsp4HI GCNGC 1 cut(s) 107
FspBI CTAG 1 cut(s) 137
GluI GCNGC 1 cut(s) 107
HaeIII GGCC 3 cut(s) 9, 212, 413
HapII CCGG 4 cut(s) 162, 202, 356, 384
HgaI GACGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 36
HinfI GANTC 2 cut(s) 165, 352
HpaII CCGG 4 cut(s) 162, 202, 356, 384
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 2 cut(s) 270, 328
Hpy188III TCNNGA 3 cut(s) 162, 319, 356
Hpy8I GTNNAC 1 cut(s) 340
Hpy99I CGWCG 1 cut(s) 260
HpyCH4IV ACGT 2 cut(s) 336, 368
HpyCH4V TGCA 1 cut(s) 66
HpyF3I CTNAG 1 cut(s) 124
HpySE526I ACGT 2 cut(s) 336, 368
Hsp92I GRCGYC 1 cut(s) 36
Kpn2I TCCGGA 2 cut(s) 161, 355
Kzo9I GATC 3 cut(s) 42, 363, 387
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 301
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 137
MaeII ACGT 2 cut(s) 336, 368
MaeIII GTNAC 3 cut(s) 146, 244, 406
MalI GATC 3 cut(s) 44, 365, 389
MboI GATC 3 cut(s) 42, 363, 387
MboII GAAGA 9 cut(s) 44, 196, 199, 202, 272, 437, 440, 443, 448
MflI RGATCY 2 cut(s) 42, 387
MhlI GDGCHC 2 cut(s) 115, 201
MluCI AATT 1 cut(s) 346
MnlI CCTC 4 cut(s) 169, 235, 267, 270
MroI TCCGGA 2 cut(s) 161, 355
MslI CAYNNNNRTG 1 cut(s) 242
MspI CCGG 4 cut(s) 162, 202, 356, 384
MspR9I CCNGG 2 cut(s) 209, 385
Mva1269I GAATGC 1 cut(s) 445
MvaI CCWGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 109
NciI CCSGG 1 cut(s) 385
NdeII GATC 3 cut(s) 42, 363, 387
NlaIV GGNNCC 3 cut(s) 206, 342, 382
NmeAIII GCCGAG 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 244, 406
NspV TTCGAA 1 cut(s) 350
OliI CACNNNNGTG 1 cut(s) 242
PciSI GCTCTTC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 445
PfeI GAWTC 2 cut(s) 165, 352
Pfl23II CGTACG 1 cut(s) 231
PflFI GACNNNGTC 1 cut(s) 131
PinAI ACCGGT 1 cut(s) 201
PkrI GCNGC 1 cut(s) 108
Ppu21I YACGTR 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspLI CGTACG 1 cut(s) 231
PspN4I GGNNCC 3 cut(s) 206, 342, 382
PspPI GGNCC 1 cut(s) 340
PsuI RGATCY 2 cut(s) 42, 387
PsyI GACNNNGTC 1 cut(s) 131
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 242
SapI GCTCTTC 1 cut(s) 255
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 3 cut(s) 42, 363, 387
Sau96I GGNCC 1 cut(s) 340
ScrFI CCNGG 2 cut(s) 209, 385
SduI GDGCHC 2 cut(s) 115, 201
SetI ASST 6 cut(s) 161, 246, 306, 339, 371, 398
SfaNI GCATC 1 cut(s) 274
SfuI TTCGAA 1 cut(s) 350
SinI GGWCC 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 176, 391
SmoI CTYRAG 2 cut(s) 176, 391
Sse9I AATT 1 cut(s) 346
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 2 cut(s) 207, 383
TaiI ACGT 2 cut(s) 339, 371
TaqI TCGA 5 cut(s) 18, 90, 258, 320, 350
TasI AATT 1 cut(s) 346
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 2 cut(s) 165, 352
TseFI GTSAC 2 cut(s) 244, 406
Tsp45I GTSAC 2 cut(s) 244, 406
TspGWI ACGGA 1 cut(s) 254
Tth111I GACNNNGTC 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 340
XapI RAATTY 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.