AT5G46900

protease inhibitor seed storage lipid transfer protein (LTP) family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
19039701 .. 19040456
756 bp
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UTR
Exon/CDS
Intron
AT5G46900.1

Sequence Viewer

Length: 384 bp
ATGGCTTATTCTAAGATTGCTCTTCTCCTCATCTTCAATGTCATCTTCTTCACTTTAGTCAGCTCGACTTCAGTCCCTTGTCCACCACCACCGCCCAAGAGCCACCACAAGAAACCCGCAACGCCATCTCCTAAACCCACTTGTAAAGACGCTCTTAAACTTAAGGTATGTGCTAACGTGTTGGATTTGGTTAAGGTTTCTCTGCCACCAACGTCCAACTGTTGCGCTCTTATCAAAGGTCTAGTTGATCTTGAAGCCGCGGTCTGTCTTTGCACTGCCCTAAAGGCTAATGTTCTTGGTATCAACCTTAATGTTCCCATTTCTTTGAACGTTGTCCTAAACCATTGTGGTAAGAAGGTTCCATCTGGTTTCAAATGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

127

Amino Acids

13.37

Weight (kDa)

9.35

Isoelectric Point (pI)

28.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 41 - 126 8e-08 Probable lipid transfer
Hydrophob_seed PF14547 48 - 127 2.3e-22 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 48 - 126 2.1e-14 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016483)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 260
AciI CCGC 4 cut(s) 92, 117, 258, 260
AclI AACGTT 1 cut(s) 330
AcuI CTGAAG 1 cut(s) 54
AflII CTTAAG 1 cut(s) 161
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 4 cut(s) 37, 254, 328, 373
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
AspLEI GCGC 1 cut(s) 227
BccI CCATC 2 cut(s) 133, 370
BfaI CTAG 2 cut(s) 242, 382
BfrI CTTAAG 1 cut(s) 161
BglI GCCNNNNNGGC 1 cut(s) 284
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 360
BoxI GACNNNNGTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
BseDI CCNNGG 1 cut(s) 258
BseRI GAGGAG 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 4 cut(s) 92, 117, 258, 260
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 360
BspQI GCTCTTC 1 cut(s) 27
BspTI CTTAAG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 27
BstAFI CTTAAG 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 258
BstFNI CGCG 1 cut(s) 260
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstPAI GACNNNNGTC 1 cut(s) 71
BstUI CGCG 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 258
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 273
CfoI GCGC 1 cut(s) 227
Cfr42I CCGCGG 1 cut(s) 261
CseI GACGC 1 cut(s) 158
CviJI RGCY 5 cut(s) 5, 63, 102, 257, 287
CviKI_1 RGCY 5 cut(s) 5, 63, 102, 257, 287
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 54
FaiI YATR 1 cut(s) 169
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FaqI GGGAC 1 cut(s) 59
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 2 cut(s) 242, 382
GlaI GCGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 258
HgaI GACGC 1 cut(s) 158
HhaI GCGC 1 cut(s) 227
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
Hpy166II GTNNAC 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 3 cut(s) 177, 212, 330
HpyCH4V TGCA 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 3 cut(s) 177, 212, 330
HspAI GCGC 1 cut(s) 225
KspI CCGCGG 1 cut(s) 261
Kzo9I GATC 1 cut(s) 247
LguI GCTCTTC 1 cut(s) 27
LpnPI CCDG 1 cut(s) 351
MaeI CTAG 2 cut(s) 242, 382
MaeII ACGT 3 cut(s) 177, 212, 330
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 4 cut(s) 14, 25, 37, 40
MmeI TCCRAC 2 cut(s) 162, 240
MnlI CCTC 1 cut(s) 38
MseI TTAA 4 cut(s) 156, 162, 192, 309
MspA1I CMGCKG 1 cut(s) 260
MspCI CTTAAG 1 cut(s) 161
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 360
PciSI GCTCTTC 1 cut(s) 27
PkrI GCNGC 1 cut(s) 259
PshAI GACNNNNGTC 1 cut(s) 71
Psp1406I AACGTT 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 360
SacII CCGCGG 1 cut(s) 261
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 4 cut(s) 156, 162, 192, 309
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 247
SetI ASST 9 cut(s) 65, 168, 180, 198, 215, 241, 309, 333, 360
Sfr303I CCGCGG 1 cut(s) 261
SgrBI CCGCGG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SsiI CCGC 4 cut(s) 92, 117, 258, 260
SspMI CTAG 2 cut(s) 242, 382
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 3 cut(s) 180, 215, 333
TaqI TCGA 1 cut(s) 65
TauI GCSGC 1 cut(s) 260
Tru1I TTAA 4 cut(s) 156, 162, 192, 309
Tru9I TTAA 4 cut(s) 156, 162, 192, 309
TscAI CASTG 1 cut(s) 280
TspRI CASTG 1 cut(s) 280
Vha464I CTTAAG 1 cut(s) 161
XspI CTAG 2 cut(s) 242, 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.