Rmu_sc0000827.1_g000016

14 kDa proline-rich protein DC2.15-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000827.1
OG0016483
Physical Location & Seq
Reverse (-)
72862 .. 73242
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000827.1_g000016.1.cds

Sequence Viewer

Length: 381 bp
atggctacttcttcgaaggcagtggcaactatcgctcttctcctctccctcaaccttttgtttttcacaacagtaagtgcaactcatcatgtcccttgcccgccaccaccagcagcggcggtgacttgtcctaaggacaccctcaagctaggggtgtgtgccaatctgttgaatgaccttgtgcaccttgttgtgggcaccccacccaagactccctgctgtagcctcattgagggtcttgttgatcttgaagctgctgtgtgcctctgcactgctattaaggccaacattctggggatcaatctgaacgtgccagtctctttgagcttgcttttgaattactgtgggaagggcgtcccatcgggcttccaatgcgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

126

Amino Acids

12.91

Weight (kDa)

7.53

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46890 AT5G46900
fragaria_vesca FvH4_7g11180
prunus_persica Prupe.2G139300_v2.0.a1 Prupe.2G139500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0349261
rosa_multiflora Rmu_sc0000827.1_g000016 Rmu_sc0002914.1_g000026
rosa_roxburghii Rroxscaffold_4G00305740
rosa_rugosa Rorug01G0202200
rosa_samantha Rh1AG219800 Rh1BG185500 Rh1DG215200
rosa_wichuraiana Rw1G018650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AciI CCGC 3 cut(s) 101, 116, 119
AclWI GGATC 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 354
AfiI CCNNNNNNNGG 2 cut(s) 193, 232
AgsI TTSAA 3 cut(s) 172, 251, 337
AluBI AGCT 3 cut(s) 148, 254, 327
AluI AGCT 3 cut(s) 148, 254, 327
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 322
Alw44I GTGCAC 1 cut(s) 182
AlwI GGATC 1 cut(s) 305
AoxI GGCC 1 cut(s) 282
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 113, 254
AspLEI GCGC 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 133
AsuII TTCGAA 1 cut(s) 14
AxyI CCTNAGG 1 cut(s) 132
BaeGI GKGCMC 2 cut(s) 186, 200
BanI GGYRCC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 125, 241
BccI CCATC 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 2 cut(s) 149, 379
BfmI CTRYAG 1 cut(s) 220
BisI GCNGC 3 cut(s) 114, 117, 255
BlsI GCNGC 3 cut(s) 115, 118, 256
BmiI GGNNCC 1 cut(s) 199
Bpu14I TTCGAA 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 354
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 232
Bse1I ACTGG 1 cut(s) 314
Bse21I CCTNAGG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 193, 232
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 2 cut(s) 186, 200
BseXI GCAGC 2 cut(s) 125, 241
BsgI GTGCAG 1 cut(s) 253
BshFI GGCC 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 186
BslFI GGGAC 2 cut(s) 77, 341
BslI CCNNNNNNNGG 2 cut(s) 193, 232
BsmAI GTCTC 1 cut(s) 322
BsmFI GGGAC 2 cut(s) 77, 341
BsnI GGCC 1 cut(s) 284
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 186, 200
Bsp143I GATC 2 cut(s) 244, 297
BspACI CCGC 3 cut(s) 101, 116, 119
BspANI GGCC 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 1 cut(s) 305
BspQI GCTCTTC 1 cut(s) 42
BspT104I TTCGAA 1 cut(s) 14
BspT107I GGYRCC 1 cut(s) 197
BsrI ACTGG 1 cut(s) 314
BssMI GATC 2 cut(s) 244, 297
BssNI GRCGYC 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 73, 344
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 354
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 101, 329
BstDEI CTNAG 1 cut(s) 132
BstENI CCTNNNNNAGG 1 cut(s) 230
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 2 cut(s) 247, 300
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 2 cut(s) 244, 297
BstMWI GCNNNNNNNGC 3 cut(s) 32, 281, 372
BstSFI CTRYAG 1 cut(s) 220
BstSLI GKGCMC 2 cut(s) 186, 200
BstV1I GCAGC 2 cut(s) 125, 241
BstXI CCANNNNNNTGG 1 cut(s) 292
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 1 cut(s) 284
BtsI GCAGTG 2 cut(s) 27, 270
BtsIMutI CAGTG 2 cut(s) 27, 270
Cac8I GCNNGC 2 cut(s) 101, 329
CfoI GCGC 1 cut(s) 377
CseI GACGC 1 cut(s) 343
CviAII CATG 1 cut(s) 89
CviJI RGCY 7 cut(s) 5, 148, 225, 254, 284, 327, 366
CviKI_1 RGCY 7 cut(s) 5, 148, 225, 254, 284, 327, 366
DdeI CTNAG 1 cut(s) 132
DpnI GATC 2 cut(s) 246, 299
DpnII GATC 2 cut(s) 244, 297
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco81I CCTNAGG 1 cut(s) 132
EcoNI CCTNNNNNAGG 1 cut(s) 230
FaeI CATG 1 cut(s) 92
FaiI YATR 1 cut(s) 90
FaqI GGGAC 2 cut(s) 77, 341
FatI CATG 1 cut(s) 88
FauI CCCGC 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 114, 117, 255
Fsp4HI GCNGC 3 cut(s) 114, 117, 255
FspBI CTAG 2 cut(s) 149, 379
GlaI GCGC 1 cut(s) 376
GluI GCNGC 3 cut(s) 114, 117, 255
HaeIII GGCC 1 cut(s) 284
HgaI GACGC 1 cut(s) 343
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HinfI GANTC 1 cut(s) 211
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 10, 343
HpyCH4III ACNGT 2 cut(s) 73, 344
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 3 cut(s) 80, 184, 270
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 281, 372
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 1 cut(s) 375
Kzo9I GATC 2 cut(s) 244, 297
LguI GCTCTTC 1 cut(s) 42
LpnPI CCDG 4 cut(s) 123, 229, 278, 327
Lsp1109I GCAGC 2 cut(s) 125, 241
MaeI CTAG 2 cut(s) 149, 379
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 121
MalI GATC 2 cut(s) 246, 299
MboI GATC 2 cut(s) 244, 297
MboII GAAGA 2 cut(s) 3, 29
MhlI GDGCHC 2 cut(s) 186, 200
MluCI AATT 1 cut(s) 337
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 6 cut(s) 53, 59, 152, 226, 236, 275
MseI TTAA 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 116
MwoI GCNNNNNNNGC 3 cut(s) 32, 281, 372
NdeII GATC 2 cut(s) 244, 297
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 121
NspV TTCGAA 1 cut(s) 14
PciSI GCTCTTC 1 cut(s) 42
PkrI GCNGC 3 cut(s) 115, 118, 256
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 199
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 3 cut(s) 114, 117, 255
Sau3AI GATC 2 cut(s) 244, 297
SchI GAGTC 1 cut(s) 205
SduI GDGCHC 2 cut(s) 186, 200
SetI ASST 7 cut(s) 57, 150, 180, 189, 256, 312, 329
SfcI CTRYAG 1 cut(s) 220
SfuI TTCGAA 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 337
SsiI CCGC 3 cut(s) 101, 116, 119
SspMI CTAG 2 cut(s) 149, 379
TaaI ACNGT 2 cut(s) 73, 344
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 14
TasI AATT 1 cut(s) 337
TauI GCSGC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 2 cut(s) 27, 277
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 2 cut(s) 113, 254
Tsp45I GTSAC 1 cut(s) 121
TspRI CASTG 2 cut(s) 27, 277
VneI GTGCAC 1 cut(s) 182
XagI CCTNNNNNAGG 1 cut(s) 230
XspI CTAG 2 cut(s) 149, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.