Rh1BG185500

14 kDa proline-rich protein DC2.15-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0016483
Physical Location & Seq
Forward (+)
30005423 .. 30005716
294 bp
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UTR
Exon/CDS
Intron
Rh1BG185500.1

Sequence Viewer

Length: 294 bp
ATGCAACTCATCATGTCCCCAGCAGCAGCGACGGCGACTTGTCCTAAGGACACCCTCAAGCTAGGGGTGTGTGCCAATCTGTTGAATGACCTTGTGCACCTTGTTGTGGGCACCCCACCCAAGACTCCCTGCTGTAGTCTCATTGAGGGTCTTGTTGATCTTGAAGCTGCTGTGTGCCTCTGCACTGCTATTAAAGCCAACATTCTGGGGATCAATCTGAACGTGCCAGTCTCTTTGAGCTTGCTTTTGAATTACTGTGGGAAGGGCGTCCCATCGGGCTTCCAATGCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

97

Amino Acids

9.95

Weight (kDa)

6.49

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 5 - 96 4.7e-08 Probable lipid transfer
Hydrophob_seed PF14547 13 - 97 8.8e-27 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 14 - 96 2.4e-17 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46890 AT5G46900
fragaria_vesca FvH4_7g11180
prunus_persica Prupe.2G139300_v2.0.a1 Prupe.2G139500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0349261
rosa_multiflora Rmu_sc0000827.1_g000016 Rmu_sc0002914.1_g000026
rosa_roxburghii Rroxscaffold_4G00305740
rosa_rugosa Rorug01G0202200
rosa_samantha Rh1AG219800 Rh1BG185500 Rh1DG215200
rosa_wichuraiana Rw1G018650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AclWI GGATC 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 3 cut(s) 85, 164, 250
AluBI AGCT 3 cut(s) 61, 167, 240
AluI AGCT 3 cut(s) 61, 167, 240
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 2 cut(s) 143, 235
Alw44I GTGCAC 1 cut(s) 95
AlwI GGATC 1 cut(s) 218
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 3 cut(s) 23, 26, 167
AspLEI GCGC 1 cut(s) 290
AxyI CCTNAGG 1 cut(s) 45
BaeGI GKGCMC 2 cut(s) 99, 113
BanI GGYRCC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 3 cut(s) 35, 38, 154
BccI CCATC 1 cut(s) 280
BceAI ACGGC 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 143, 235
BfaI CTAG 2 cut(s) 62, 292
BfmI CTRYAG 1 cut(s) 133
BisI GCNGC 3 cut(s) 24, 27, 168
BlsI GCNGC 3 cut(s) 25, 28, 169
BmiI GGNNCC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 227
Bse21I CCTNAGG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 106
BseNI ACTGG 1 cut(s) 227
BseSI GKGCMC 2 cut(s) 99, 113
BseXI GCAGC 3 cut(s) 35, 38, 154
BseYI CCCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 166
BshNI GGYRCC 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 99
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 2 cut(s) 143, 235
BsmFI GGGAC 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 99, 113
Bsp143I GATC 2 cut(s) 157, 210
BspLI GGNNCC 1 cut(s) 112
BspPI GGATC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 227
BssMI GATC 2 cut(s) 157, 210
BssNI GRCGYC 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 242
BstDEI CTNAG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 2 cut(s) 160, 213
BstMAI GTCTC 2 cut(s) 143, 235
BstMBI GATC 2 cut(s) 157, 210
BstMWI GCNNNNNNNGC 3 cut(s) 32, 194, 285
BstSFI CTRYAG 1 cut(s) 133
BstSLI GKGCMC 2 cut(s) 99, 113
BstV1I GCAGC 3 cut(s) 35, 38, 154
BstXI CCANNNNNNTGG 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 242
CfoI GCGC 1 cut(s) 290
CseI GACGC 1 cut(s) 256
CviAII CATG 1 cut(s) 13
CviJI RGCY 5 cut(s) 61, 167, 197, 240, 279
CviKI_1 RGCY 5 cut(s) 61, 167, 197, 240, 279
DdeI CTNAG 1 cut(s) 45
DpnI GATC 2 cut(s) 159, 212
DpnII GATC 2 cut(s) 157, 210
Eco81I CCTNAGG 1 cut(s) 45
FaeI CATG 1 cut(s) 16
FaiI YATR 1 cut(s) 14
FaqI GGGAC 1 cut(s) 254
FatI CATG 1 cut(s) 12
Fnu4HI GCNGC 3 cut(s) 24, 27, 168
Fsp4HI GCNGC 3 cut(s) 24, 27, 168
FspBI CTAG 2 cut(s) 62, 292
GlaI GCGC 1 cut(s) 289
GluI GCNGC 3 cut(s) 24, 27, 168
GsaI CCCAGC 1 cut(s) 23
HgaI GACGC 1 cut(s) 256
HhaI GCGC 1 cut(s) 290
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HinfI GANTC 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 4, 97, 183
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 194, 285
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 1 cut(s) 288
Kzo9I GATC 2 cut(s) 157, 210
LpnPI CCDG 4 cut(s) 33, 142, 191, 240
Lsp1109I GCAGC 3 cut(s) 35, 38, 154
MaeI CTAG 2 cut(s) 62, 292
MaeII ACGT 1 cut(s) 222
MalI GATC 2 cut(s) 159, 212
MboI GATC 2 cut(s) 157, 210
MhlI GDGCHC 2 cut(s) 99, 113
MluCI AATT 1 cut(s) 250
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 3 cut(s) 65, 139, 188
MseI TTAA 1 cut(s) 192
MwoI GCNNNNNNNGC 3 cut(s) 32, 194, 285
NdeII GATC 2 cut(s) 157, 210
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 112
PkrI GCNGC 3 cut(s) 25, 28, 169
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 112
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 3 cut(s) 24, 27, 168
Sau3AI GATC 2 cut(s) 157, 210
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 2 cut(s) 99, 113
SetI ASST 6 cut(s) 63, 93, 102, 169, 225, 242
SfcI CTRYAG 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 1 cut(s) 250
SspMI CTAG 2 cut(s) 62, 292
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 1 cut(s) 225
TasI AATT 1 cut(s) 250
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 190
TseI GCWGC 3 cut(s) 23, 26, 167
TspRI CASTG 1 cut(s) 190
VneI GTGCAC 1 cut(s) 95
XspI CTAG 2 cut(s) 62, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.