Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016483

Physical Location & Seq

Genomic Coordinates Forward (+)

19659941 .. 19660650

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G139500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCTTCTTCTATGGCAATTGCAACCATTGCTCTTCTTCTCTCCCTTAACCTTGTATTTTTCACTACAGTGAGTTCAAATCATCATGTTCCTAATTGTCCACCACCACCAAAAACCCCAAAACACCCTCCTCCCTCAACCCCAATCCCTCCAGCTAAAGCCTCTTGCCCTAAGGACACCCTTAAGCTTGGGGTATGTGGTGCTTTGTTGAATGGTTTGGTGCACCTTGTCGTGGGGACCCCACCAAAGACCCCTTGTTGTAGCCTCATTGGGGGTCTTGCTGATGTTGAAGCTGCTGTATGCCTTTGCACTGCCATTAAAGCCAATGTTTTGGGCATCAATCTTAATGTGCCAGTCTCCTTAAGCTTGCTTTTGAATTACTGTGGTAAGTCTGTCCCAACAGGCTTCCAATGCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

140

Amino Acids

14.17

Weight (kDa)

8.8

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46890 AT5G46900
fragaria_vesca	FvH4_7g11180
prunus_persica	Prupe.2G139300_v2.0.a1 Prupe.2G139500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349261
rosa_multiflora	Rmu_sc0000827.1_g000016 Rmu_sc0002914.1_g000026
rosa_roxburghii	Rroxscaffold_4G00305740
rosa_rugosa	Rorug01G0202200
rosa_samantha	Rh1AG219800 Rh1BG185500 Rh1DG215200
rosa_wichuraiana	Rw1G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	232, 271
AflII	CTTAAG	2 cut(s)	182, 361
AgsI	TTSAA	4 cut(s)	78, 211, 290, 376
AleI	CACNNNNGTG	1 cut(s)	68
AluBI	AGCT	4 cut(s)	155, 187, 293, 366
AluI	AGCT	4 cut(s)	155, 187, 293, 366
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	361
Alw44I	GTGCAC	1 cut(s)	221
ApaLI	GTGCAC	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	237
AxyI	CCTNAGG	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	418
BfmI	CTRYAG	1 cut(s)	66
BfrI	CTTAAG	2 cut(s)	182, 361
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme18I	GGWCC	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	2 cut(s)	238, 239
BmsI	GCATC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 271
Bse1I	ACTGG	1 cut(s)	353
Bse21I	CCTNAGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	232, 271
BseMI	GCAATG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	225
BslFI	GGGAC	2 cut(s)	250, 380
BslI	CCNNNNNNNGG	2 cut(s)	232, 271
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	2 cut(s)	250, 380
Bsp1286I	GDGCHC	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	238, 239
BspQI	GCTCTTC	1 cut(s)	39
BspTI	CTTAAG	2 cut(s)	182, 361
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	353
Bst4CI	ACNGT	2 cut(s)	70, 383
Bst6I	CTCTTC	1 cut(s)	39
BstAFI	CTTAAG	2 cut(s)	182, 361
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	416
BstMAI	GTCTC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 320, 411
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	331
Bsu36I	CCTNAGG	1 cut(s)	171
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	75, 309
Cac8I	GCNNGC	1 cut(s)	368
CfoI	GCGC	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	237
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	9 cut(s)	5, 155, 161, 187, 264, 293, 323, 366, 405
CviKI_1	RGCY	9 cut(s)	5, 155, 161, 187, 264, 293, 323, 366, 405
DdeI	CTNAG	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	237
FaeI	CATG	1 cut(s)	89
FaiI	YATR	4 cut(s)	14, 87, 196, 301
FaqI	GGGAC	2 cut(s)	250, 380
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	418
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	135
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HindIII	AAGCTT	2 cut(s)	185, 364
Hpy166II	GTNNAC	2 cut(s)	101, 223
Hpy8I	GTNNAC	2 cut(s)	101, 223
HpyCH4III	ACNGT	2 cut(s)	70, 383
HpyCH4V	TGCA	3 cut(s)	23, 223, 309
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 320, 411
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	1 cut(s)	414
KflI	GGGWCCC	1 cut(s)	237
LguI	GCTCTTC	1 cut(s)	39
LpnPI	CCDG	3 cut(s)	165, 366, 387
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	418
MboII	GAAGA	2 cut(s)	26, 29
MfeI	CAATTG	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	3 cut(s)	18, 94, 376
MnlI	CCTC	6 cut(s)	138, 141, 145, 159, 172, 275
MseI	TTAA	5 cut(s)	48, 183, 318, 345, 362
MslI	CAYNNNNRTG	1 cut(s)	68
MspCI	CTTAAG	2 cut(s)	182, 361
MunI	CAATTG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	29, 320, 411
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	2 cut(s)	238, 239
OliI	CACNNNNGTG	1 cut(s)	68
PciSI	GCTCTTC	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	295
PpuMI	RGGWCCY	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	238, 239
PspPI	GGNCC	1 cut(s)	237
PspPPI	RGGWCCY	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	5 cut(s)	48, 183, 318, 345, 362
SatI	GCNGC	1 cut(s)	294
Sau96I	GGNCC	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	6 cut(s)	54, 157, 189, 228, 295, 368
SfaNI	GCATC	1 cut(s)	345
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	2 cut(s)	182, 361
SmoI	CTYRAG	2 cut(s)	182, 361
Sse9I	AATT	3 cut(s)	18, 94, 376
SspMI	CTAG	1 cut(s)	418
TaaI	ACNGT	2 cut(s)	70, 383
TasI	AATT	3 cut(s)	18, 94, 376
Tru1I	TTAA	5 cut(s)	48, 183, 318, 345, 362
Tru9I	TTAA	5 cut(s)	48, 183, 318, 345, 362
TscAI	CASTG	2 cut(s)	75, 316
TseI	GCWGC	1 cut(s)	293
TspRI	CASTG	2 cut(s)	75, 316
Vha464I	CTTAAG	2 cut(s)	182, 361
VneI	GTGCAC	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	237
XspI	CTAG	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.