Rw1G018650

14 kDa proline-rich protein DC2.15-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0016483
Physical Location & Seq
Forward (+)
41090111 .. 41090491
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G018650.1

Sequence Viewer

Length: 381 bp
ATGGCTACTTCTTCTAAGGCAGTGGCAACTATCGCTCTTCTCCTCTCCCTCAACCTTGTGTTTTTCACAATAGTAAGTGCAACTCATCATGTCCCTTGCCCGCCACCACCAGCAGCGGCGGCGACTTGTCCTAAGGACACCCTCAGGCTAGGGGTGTGTGCCAATCTGTTGAATGACCTTGTGCACCTTGTTGTGGGCACCCCACCCAAGACTCCCTGCTGTAGCCTCATTGAGGGTCTTGTTGATCTTGAAGCTGCTGTGTGCCTCTGCACTGCTATTAAGGCCAACATTCTGGGGATCAATCTGAACGTGCCAGTCTCTTTGAGCTTGCTTTTGAATTACTGTGGGAAGGGCGTCCCATCGGGCTTCCAATGCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

126

Amino Acids

12.91

Weight (kDa)

7.53

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 25 - 125 3.9e-08 Probable lipid transfer
Hydrophob_seed PF14547 42 - 126 5.1e-26 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 43 - 125 1.2e-16 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46890 AT5G46900
fragaria_vesca FvH4_7g11180
prunus_persica Prupe.2G139300_v2.0.a1 Prupe.2G139500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0349261
rosa_multiflora Rmu_sc0000827.1_g000016 Rmu_sc0002914.1_g000026
rosa_roxburghii Rroxscaffold_4G00305740
rosa_rugosa Rorug01G0202200
rosa_samantha Rh1AG219800 Rh1BG185500 Rh1DG215200
rosa_wichuraiana Rw1G018650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AciI CCGC 3 cut(s) 101, 116, 119
AclWI GGATC 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 354
AfiI CCNNNNNNNGG 2 cut(s) 193, 232
AgsI TTSAA 3 cut(s) 172, 251, 337
AluBI AGCT 2 cut(s) 254, 327
AluI AGCT 2 cut(s) 254, 327
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 322
Alw44I GTGCAC 1 cut(s) 182
AlwI GGATC 1 cut(s) 305
AoxI GGCC 1 cut(s) 282
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 113, 254
AspLEI GCGC 1 cut(s) 377
AxyI CCTNAGG 2 cut(s) 132, 143
BaeGI GKGCMC 2 cut(s) 186, 200
BanI GGYRCC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 125, 241
BccI CCATC 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 2 cut(s) 149, 379
BfmI CTRYAG 1 cut(s) 220
BisI GCNGC 4 cut(s) 114, 117, 120, 255
BlsI GCNGC 4 cut(s) 115, 118, 121, 256
BmiI GGNNCC 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 354
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 232
Bse1I ACTGG 1 cut(s) 314
Bse21I CCTNAGG 2 cut(s) 132, 143
BseLI CCNNNNNNNGG 2 cut(s) 193, 232
BseMII CTCAG 1 cut(s) 157
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 2 cut(s) 186, 200
BseXI GCAGC 2 cut(s) 125, 241
BsgI GTGCAG 1 cut(s) 253
BshFI GGCC 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 186
BslFI GGGAC 2 cut(s) 77, 341
BslI CCNNNNNNNGG 2 cut(s) 193, 232
BsmAI GTCTC 1 cut(s) 322
BsmFI GGGAC 2 cut(s) 77, 341
BsnI GGCC 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 186, 200
Bsp143I GATC 2 cut(s) 244, 297
BspACI CCGC 3 cut(s) 101, 116, 119
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 1 cut(s) 305
BspQI GCTCTTC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 197
BsrI ACTGG 1 cut(s) 314
BssMI GATC 2 cut(s) 244, 297
BssNI GRCGYC 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 344
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 101, 329
BstDEI CTNAG 3 cut(s) 15, 132, 143
BstENI CCTNNNNNAGG 1 cut(s) 230
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 2 cut(s) 247, 300
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 2 cut(s) 244, 297
BstMWI GCNNNNNNNGC 4 cut(s) 32, 119, 281, 372
BstSFI CTRYAG 1 cut(s) 220
BstSLI GKGCMC 2 cut(s) 186, 200
BstV1I GCAGC 2 cut(s) 125, 241
BstXI CCANNNNNNTGG 1 cut(s) 292
Bsu36I CCTNAGG 2 cut(s) 132, 143
BsuRI GGCC 1 cut(s) 284
BtsI GCAGTG 2 cut(s) 27, 270
BtsIMutI CAGTG 2 cut(s) 27, 270
Cac8I GCNNGC 2 cut(s) 101, 329
CfoI GCGC 1 cut(s) 377
CseI GACGC 1 cut(s) 343
CviAII CATG 1 cut(s) 89
CviJI RGCY 7 cut(s) 5, 148, 225, 254, 284, 327, 366
CviKI_1 RGCY 7 cut(s) 5, 148, 225, 254, 284, 327, 366
DdeI CTNAG 3 cut(s) 15, 132, 143
DpnI GATC 2 cut(s) 246, 299
DpnII GATC 2 cut(s) 244, 297
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco81I CCTNAGG 2 cut(s) 132, 143
EcoNI CCTNNNNNAGG 1 cut(s) 230
FaeI CATG 1 cut(s) 92
FaiI YATR 1 cut(s) 90
FaqI GGGAC 2 cut(s) 77, 341
FatI CATG 1 cut(s) 88
FauI CCCGC 1 cut(s) 108
Fnu4HI GCNGC 4 cut(s) 114, 117, 120, 255
Fsp4HI GCNGC 4 cut(s) 114, 117, 120, 255
FspBI CTAG 2 cut(s) 149, 379
GlaI GCGC 1 cut(s) 376
GluI GCNGC 4 cut(s) 114, 117, 120, 255
HaeIII GGCC 1 cut(s) 284
HgaI GACGC 1 cut(s) 343
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HinfI GANTC 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 3 cut(s) 80, 184, 270
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 119, 281, 372
HpyF3I CTNAG 3 cut(s) 15, 132, 143
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 1 cut(s) 375
Kzo9I GATC 2 cut(s) 244, 297
LguI GCTCTTC 1 cut(s) 42
LpnPI CCDG 5 cut(s) 123, 130, 229, 278, 327
Lsp1109I GCAGC 2 cut(s) 125, 241
MaeI CTAG 2 cut(s) 149, 379
MaeII ACGT 1 cut(s) 309
MalI GATC 2 cut(s) 246, 299
MboI GATC 2 cut(s) 244, 297
MboII GAAGA 2 cut(s) 3, 29
MhlI GDGCHC 2 cut(s) 186, 200
MluCI AATT 1 cut(s) 337
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 6 cut(s) 53, 59, 152, 226, 236, 275
MseI TTAA 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 116
MwoI GCNNNNNNNGC 4 cut(s) 32, 119, 281, 372
NdeII GATC 2 cut(s) 244, 297
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 42
PkrI GCNGC 4 cut(s) 115, 118, 121, 256
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 199
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 4 cut(s) 114, 117, 120, 255
Sau3AI GATC 2 cut(s) 244, 297
SchI GAGTC 1 cut(s) 205
SduI GDGCHC 2 cut(s) 186, 200
SetI ASST 6 cut(s) 57, 180, 189, 256, 312, 329
SfcI CTRYAG 1 cut(s) 220
Sse9I AATT 1 cut(s) 337
SsiI CCGC 3 cut(s) 101, 116, 119
SspMI CTAG 2 cut(s) 149, 379
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 1 cut(s) 312
TasI AATT 1 cut(s) 337
TauI GCSGC 2 cut(s) 119, 122
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 2 cut(s) 27, 277
TseI GCWGC 2 cut(s) 113, 254
TspRI CASTG 2 cut(s) 27, 277
VneI GTGCAC 1 cut(s) 182
XagI CCTNNNNNAGG 1 cut(s) 230
XspI CTAG 2 cut(s) 149, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.