Rorug01G0202200

14 kDa proline-rich protein DC2.15-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016483
Physical Location & Seq
Forward (+)
28119671 .. 28120297
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0202200.1

Sequence Viewer

Length: 627 bp
ATGGCTACTATGAGGTTGGTTCGATTAATGATGATGATGATCATATTAGTACTTTCTTTGGCCACCTCCAAAAGGGTCTTAGCAAGTGATCCTGACATTCTCTCTGACTACATACTGCCTCAAAACAGCACAACTGTTAATGCTACCTACTTTACATACACTGGATTCCGAGACATATTTGATCAAACACCCGAAACCTTCAAGGCAACAAAAGCCAGCATAGTGGAGTTCCCTGCTCTCAATGGCCAGAGTGTGTCATATGCCGTGCTTCAATTCCCTCCGAGCACACTGTTCCCACCTCACACCCGCCCTGATGCCACTGGACTTTTGTTCCTTCTTGCCGGTTCCTTGGAAGTTGGGTTAATTGACACAAAAAATGTCCTATACAATCAAAAGCTTCAGGCTGGAGATATCTTTATATTTCCTAAGGGCTTAATCCATTATCAGTATAACTCTGATCCTCAGTTGCCAGCTACCGCCATTGCAGCATTCGGAAGTGCAAGTGCTAGAGCAGTTACAGTTCCACCTTCTGTTTTTACCTCGGGTATTGACGATGTCATCCTTGCCAAATCTTTCAAGACTGACGTTGATACCATTAAGAAGATTAAGGCTGGCCTCACTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

208

Amino Acids

22.62

Weight (kDa)

7.89

Isoelectric Point (pI)

30.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 66 - 199 2.3e-25 Cupin
Cupin_2 PF07883 90 - 162 1.2e-06 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46890 AT5G46900
fragaria_vesca FvH4_7g11180
prunus_persica Prupe.2G139300_v2.0.a1 Prupe.2G139500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0349261
rosa_multiflora Rmu_sc0000827.1_g000016 Rmu_sc0002914.1_g000026
rosa_roxburghii Rroxscaffold_4G00305740
rosa_rugosa Rorug01G0202200
rosa_samantha Rh1AG219800 Rh1BG185500 Rh1DG215200
rosa_wichuraiana Rw1G018650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 307, 477
AclWI GGATC 2 cut(s) 83, 452
AcoI YGGCCR 2 cut(s) 60, 244
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 3 cut(s) 202, 272, 577
AluBI AGCT 3 cut(s) 397, 473, 624
AluI AGCT 3 cut(s) 397, 473, 624
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 2 cut(s) 83, 452
Ama87I CYCGRG 1 cut(s) 541
AoxI GGCC 3 cut(s) 60, 244, 613
ApeKI GCWGC 1 cut(s) 485
AseI ATTAAT 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 541
AxyI CCTNAGG 1 cut(s) 426
BalI TGGCCA 2 cut(s) 62, 246
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 497
BceAI ACGGC 1 cut(s) 248
BclI TGATCA 2 cut(s) 39, 181
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 3 cut(s) 507, 621, 625
BisI GCNGC 1 cut(s) 486
BlsI GCNGC 1 cut(s) 487
BmcAI AGTACT 1 cut(s) 51
BmeT110I CYCGRG 1 cut(s) 541
BmiI GGNNCC 1 cut(s) 346
BmsI GCATC 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 426
BsaBI GATNNNNATC 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 348, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 2 cut(s) 166, 325
Bse21I CCTNAGG 1 cut(s) 426
Bse3DI GCAATG 1 cut(s) 480
Bse8I GATNNNNATC 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 348, 540
BseGI GGATG 1 cut(s) 558
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 476
BseNI ACTGG 2 cut(s) 166, 325
BseXI GCAGC 1 cut(s) 497
BshFI GGCC 3 cut(s) 62, 246, 615
BsiHKAI GWGCWC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 541
BsiSI CCGG 1 cut(s) 342
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 165
BsmI GAATGC 1 cut(s) 488
BsnI GGCC 3 cut(s) 62, 246, 615
BsoBI CYCGRG 1 cut(s) 541
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 4 cut(s) 39, 88, 181, 457
BspACI CCGC 2 cut(s) 307, 477
BspANI GGCC 3 cut(s) 62, 246, 615
BspCNI CTCAG 1 cut(s) 475
BspLI GGNNCC 1 cut(s) 346
BspPI GGATC 2 cut(s) 83, 452
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 2 cut(s) 166, 325
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 348, 540
BssMI GATC 4 cut(s) 39, 88, 181, 457
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 3 cut(s) 136, 291, 520
BstC8I GCNNGC 3 cut(s) 217, 471, 613
BstDEI CTNAG 3 cut(s) 79, 426, 462
BstENI CCTNNNNNAGG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 558
BstKTI GATC 4 cut(s) 42, 91, 184, 460
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 4 cut(s) 39, 88, 181, 457
BstMWI GCNNNNNNNGC 3 cut(s) 212, 485, 621
BstV1I GCAGC 1 cut(s) 497
BstXI CCANNNNNNTGG 1 cut(s) 223
Bsu36I CCTNAGG 1 cut(s) 426
BsuRI GGCC 3 cut(s) 62, 246, 615
BtsCI GGATG 1 cut(s) 558
BtsIMutI CAGTG 3 cut(s) 159, 287, 318
Cac8I GCNNGC 3 cut(s) 217, 471, 613
Cfr10I RCCGGY 1 cut(s) 341
Csp6I GTAC 1 cut(s) 50
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 3 cut(s) 79, 426, 462
DpnI GATC 4 cut(s) 41, 90, 183, 459
DpnII GATC 4 cut(s) 39, 88, 181, 457
EaeI YGGCCR 2 cut(s) 60, 244
Eco130I CCWWGG 1 cut(s) 348
Eco32I GATATC 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 383
Eco81I CCTNAGG 1 cut(s) 426
Eco88I CYCGRG 1 cut(s) 541
EcoNI CCTNNNNNAGG 1 cut(s) 70
EcoRV GATATC 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FauI CCCGC 1 cut(s) 314
FauNDI CATATG 1 cut(s) 259
FbaI TGATCA 2 cut(s) 39, 181
Fnu4HI GCNGC 1 cut(s) 486
FokI GGATG 1 cut(s) 545
Fsp4HI GCNGC 1 cut(s) 486
FspBI CTAG 3 cut(s) 507, 621, 625
GluI GCNGC 1 cut(s) 486
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 3 cut(s) 62, 246, 615
HapII CCGG 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 1 cut(s) 165
HpaII CCGG 1 cut(s) 342
Hpy188I TCNGA 5 cut(s) 106, 170, 282, 457, 494
Hpy188III TCNNGA 2 cut(s) 92, 577
HpyAV CCTTC 3 cut(s) 208, 344, 537
HpyCH4III ACNGT 3 cut(s) 136, 291, 520
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 2 cut(s) 485, 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 485, 621
HpyF3I CTNAG 3 cut(s) 79, 426, 462
HpySE526I ACGT 1 cut(s) 585
Ksp22I TGATCA 2 cut(s) 39, 181
Kzo9I GATC 4 cut(s) 39, 88, 181, 457
Lsp1109I GCAGC 1 cut(s) 497
LweI GCATC 1 cut(s) 304
MaeI CTAG 3 cut(s) 507, 621, 625
MaeII ACGT 1 cut(s) 585
MaeIII GTNAC 1 cut(s) 514
MalI GATC 4 cut(s) 41, 90, 183, 459
MboI GATC 4 cut(s) 39, 88, 181, 457
MboII GAAGA 1 cut(s) 613
MhlI GDGCHC 1 cut(s) 287
MlsI TGGCCA 2 cut(s) 62, 246
MluCI AATT 2 cut(s) 272, 363
MluNI TGGCCA 2 cut(s) 62, 246
MnlI CCTC 8 cut(s) 6, 76, 129, 288, 309, 471, 550, 626
Mox20I TGGCCA 2 cut(s) 62, 246
MscI TGGCCA 2 cut(s) 62, 246
MseI TTAA 6 cut(s) 26, 138, 362, 434, 597, 606
Msp20I TGGCCA 2 cut(s) 62, 246
MspI CCGG 1 cut(s) 342
Mva1269I GAATGC 1 cut(s) 488
MwoI GCNNNNNNNGC 3 cut(s) 212, 485, 621
NdeI CATATG 1 cut(s) 259
NdeII GATC 4 cut(s) 39, 88, 181, 457
NlaIV GGNNCC 1 cut(s) 346
PctI GAATGC 1 cut(s) 488
PfeI GAWTC 1 cut(s) 165
PflFI GACNNNGTC 1 cut(s) 554
PkrI GCNGC 1 cut(s) 487
PshBI ATTAAT 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 346
PsyI GACNNNGTC 1 cut(s) 554
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SaqAI TTAA 6 cut(s) 26, 138, 362, 434, 597, 606
SatI GCNGC 1 cut(s) 486
Sau3AI GATC 4 cut(s) 39, 88, 181, 457
ScaI AGTACT 1 cut(s) 51
SduI GDGCHC 1 cut(s) 287
SfaNI GCATC 1 cut(s) 304
Sse9I AATT 2 cut(s) 272, 363
SsiI CCGC 2 cut(s) 307, 477
SspMI CTAG 3 cut(s) 507, 621, 625
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 3 cut(s) 136, 291, 520
TaiI ACGT 1 cut(s) 588
TaqI TCGA 1 cut(s) 22
TasI AATT 2 cut(s) 272, 363
TatI WGTACW 1 cut(s) 49
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 6 cut(s) 26, 138, 362, 434, 597, 606
Tru9I TTAA 6 cut(s) 26, 138, 362, 434, 597, 606
TscAI CASTG 3 cut(s) 166, 294, 325
TseI GCWGC 1 cut(s) 485
TspRI CASTG 3 cut(s) 166, 294, 325
Tth111I GACNNNGTC 1 cut(s) 554
VspI ATTAAT 1 cut(s) 26
XagI CCTNNNNNAGG 1 cut(s) 70
XspI CTAG 3 cut(s) 507, 621, 625
ZrmI AGTACT 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.