FvH4_7g11180

14 kDa proline-rich protein DC2.15-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016483
Physical Location & Seq
Forward (+)
10440044 .. 10440784
741 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11180.t1

Sequence Viewer

Length: 408 bp
ATGGCTTCTTCTTCTAAAGCAGTGGCAACTATCGCTCTTCTCCTCTCCCTCAACATAGTGTTTTTCACCACAGTCAGTGCAAACCATTATGTCCCTTGCCCGCCGCCACCGAAAACCCCGAAACACCCTCCAACACCACCAGCGGCGGCGACTTGCCCTAAGGACACCCTCAAGCTAGGGGTTTGTGCCAATTTGTTGAATGACTTGGTGCACCTTGTCGTGGGCACCCCGCCAAAGACCCCATGCTGCAGCCTCATTGAGGGTCTTGTTGATCTTGAAGCTGCTGTGTGCCTCTGCACGGCTCTTAAGGCCAACGTTCTGGGGATCAATTTGAACGTGCCAATCTCTTTGAGCTTGCTTTTGAATTACTGTGGGAAGGGCGTCCCAGCTGGCTTCCAATGCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

136

Amino Acids

13.88

Weight (kDa)

8.4

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 43 - 134 2.1e-07 Probable lipid transfer
Hydrophob_seed PF14547 51 - 135 3.9e-26 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 52 - 134 2.2e-16 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46890 AT5G46900
fragaria_vesca FvH4_7g11180
prunus_persica Prupe.2G139300_v2.0.a1 Prupe.2G139500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0349261
rosa_multiflora Rmu_sc0000827.1_g000016 Rmu_sc0002914.1_g000026
rosa_roxburghii Rroxscaffold_4G00305740
rosa_rugosa Rorug01G0202200
rosa_samantha Rh1AG219800 Rh1BG185500 Rh1DG215200
rosa_wichuraiana Rw1G018650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 224
AciI CCGC 5 cut(s) 101, 104, 143, 146, 230
AclI AACGTT 1 cut(s) 315
AclWI GGATC 1 cut(s) 332
AcyI GRCGYC 1 cut(s) 381
AfiI CCNNNNNNNGG 3 cut(s) 220, 259, 298
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 4 cut(s) 199, 278, 334, 364
AluBI AGCT 4 cut(s) 175, 281, 354, 389
AluI AGCT 4 cut(s) 175, 281, 354, 389
Alw21I GWGCWC 1 cut(s) 213
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 1 cut(s) 332
AoxI GGCC 1 cut(s) 309
ApaLI GTGCAC 1 cut(s) 209
ApeKI GCWGC 3 cut(s) 246, 249, 281
AspLEI GCGC 1 cut(s) 404
AsuHPI GGTGA 1 cut(s) 58
AxyI CCTNAGG 1 cut(s) 159
BaeGI GKGCMC 2 cut(s) 213, 227
BanI GGYRCC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 3 cut(s) 233, 261, 268
BceAI ACGGC 1 cut(s) 315
BfaI CTAG 2 cut(s) 176, 406
BfmI CTRYAG 1 cut(s) 247
BfrI CTTAAG 1 cut(s) 305
BisI GCNGC 6 cut(s) 104, 144, 147, 247, 250, 282
BlsI GCNGC 6 cut(s) 105, 145, 148, 248, 251, 283
BmiI GGNNCC 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 381
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 259, 298
Bse21I CCTNAGG 1 cut(s) 159
BseLI CCNNNNNNNGG 3 cut(s) 220, 259, 298
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 2 cut(s) 213, 227
BseXI GCAGC 3 cut(s) 233, 261, 268
BseYI CCCAGC 1 cut(s) 385
BsgI GTGCAG 1 cut(s) 280
BshFI GGCC 1 cut(s) 311
BshNI GGYRCC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 213
BslFI GGGAC 2 cut(s) 77, 368
BslI CCNNNNNNNGG 3 cut(s) 220, 259, 298
BsmFI GGGAC 2 cut(s) 77, 368
BsnI GGCC 1 cut(s) 311
Bsp1286I GDGCHC 2 cut(s) 213, 227
Bsp143I GATC 2 cut(s) 271, 324
BspACI CCGC 5 cut(s) 101, 104, 143, 146, 230
BspANI GGCC 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 226
BspMAI CTGCAG 1 cut(s) 251
BspPI GGATC 1 cut(s) 332
BspQI GCTCTTC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 224
BspTI CTTAAG 1 cut(s) 305
BssMI GATC 2 cut(s) 271, 324
BssNI GRCGYC 1 cut(s) 381
Bst4CI ACNGT 2 cut(s) 73, 371
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 381
BstAFI CTTAAG 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 101, 356, 391
BstDEI CTNAG 1 cut(s) 159
BstENI CCTNNNNNAGG 1 cut(s) 257
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 2 cut(s) 274, 327
BstMBI GATC 2 cut(s) 271, 324
BstMWI GCNNNNNNNGC 3 cut(s) 32, 308, 399
BstSFI CTRYAG 1 cut(s) 247
BstSLI GKGCMC 2 cut(s) 213, 227
BstV1I GCAGC 3 cut(s) 233, 261, 268
BstXI CCANNNNNNTGG 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 159
BsuRI GGCC 1 cut(s) 311
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 2 cut(s) 27, 82
Cac8I GCNNGC 3 cut(s) 101, 356, 391
CfoI GCGC 1 cut(s) 404
CseI GACGC 1 cut(s) 370
CviAII CATG 1 cut(s) 243
CviJI RGCY 9 cut(s) 5, 175, 252, 281, 302, 311, 354, 389, 393
CviKI_1 RGCY 9 cut(s) 5, 175, 252, 281, 302, 311, 354, 389, 393
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 273, 326
DpnII GATC 2 cut(s) 271, 324
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco81I CCTNAGG 1 cut(s) 159
EcoNI CCTNNNNNAGG 1 cut(s) 257
FaeI CATG 1 cut(s) 246
FaiI YATR 3 cut(s) 56, 90, 244
FaqI GGGAC 2 cut(s) 77, 368
FatI CATG 1 cut(s) 242
FauI CCCGC 2 cut(s) 108, 237
Fnu4HI GCNGC 6 cut(s) 104, 144, 147, 247, 250, 282
Fsp4HI GCNGC 6 cut(s) 104, 144, 147, 247, 250, 282
FspBI CTAG 2 cut(s) 176, 406
GlaI GCGC 1 cut(s) 403
GluI GCNGC 6 cut(s) 104, 144, 147, 247, 250, 282
GsaI CCCAGC 1 cut(s) 389
HaeIII GGCC 1 cut(s) 311
HgaI GACGC 1 cut(s) 370
HhaI GCGC 1 cut(s) 404
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 1 cut(s) 246
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 2 cut(s) 73, 371
HpyCH4IV ACGT 2 cut(s) 315, 336
HpyCH4V TGCA 4 cut(s) 80, 211, 249, 297
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 308, 399
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 2 cut(s) 315, 336
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 1 cut(s) 246
HspAI GCGC 1 cut(s) 402
Kzo9I GATC 2 cut(s) 271, 324
LguI GCTCTTC 1 cut(s) 42
LpnPI CCDG 4 cut(s) 153, 305, 375, 399
Lsp1109I GCAGC 3 cut(s) 233, 261, 268
MaeI CTAG 2 cut(s) 176, 406
MaeII ACGT 2 cut(s) 315, 336
MalI GATC 2 cut(s) 273, 326
MboI GATC 2 cut(s) 271, 324
MboII GAAGA 2 cut(s) 3, 29
MhlI GDGCHC 2 cut(s) 213, 227
MluCI AATT 3 cut(s) 190, 328, 364
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 7 cut(s) 53, 59, 138, 179, 253, 263, 302
MseI TTAA 1 cut(s) 306
MspA1I CMGCKG 2 cut(s) 143, 389
MspCI CTTAAG 1 cut(s) 305
MwoI GCNNNNNNNGC 3 cut(s) 32, 308, 399
NdeII GATC 2 cut(s) 271, 324
NlaIII CATG 1 cut(s) 246
NlaIV GGNNCC 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 42
PkrI GCNGC 6 cut(s) 105, 145, 148, 248, 251, 283
Psp1406I AACGTT 1 cut(s) 315
PspFI CCCAGC 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 226
PstI CTGCAG 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 389
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 6 cut(s) 104, 144, 147, 247, 250, 282
Sau3AI GATC 2 cut(s) 271, 324
SduI GDGCHC 2 cut(s) 213, 227
SetI ASST 7 cut(s) 177, 216, 283, 318, 339, 356, 391
SfcI CTRYAG 1 cut(s) 247
SmlI CTYRAG 2 cut(s) 170, 305
SmoI CTYRAG 2 cut(s) 170, 305
Sse9I AATT 3 cut(s) 190, 328, 364
SsiI CCGC 5 cut(s) 101, 104, 143, 146, 230
SspMI CTAG 2 cut(s) 176, 406
TaaI ACNGT 2 cut(s) 73, 371
TaiI ACGT 2 cut(s) 318, 339
TasI AATT 3 cut(s) 190, 328, 364
TauI GCSGC 3 cut(s) 106, 146, 149
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 2 cut(s) 27, 82
TseI GCWGC 3 cut(s) 246, 249, 281
TspRI CASTG 2 cut(s) 27, 82
Vha464I CTTAAG 1 cut(s) 305
VneI GTGCAC 1 cut(s) 209
XagI CCTNNNNNAGG 1 cut(s) 257
XspI CTAG 2 cut(s) 176, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.