AT5G46910

C5HC2 zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007240
Physical Location & Seq
Forward (+)
19046339 .. 19051379
5041 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G46910.2

Sequence Viewer

Length: 2364 bp
ATGGCGGAAAGGAGGATCTGCTTGTCTAAAGAGGCTAAGGATGGGTTAGAATTTCTGAAACGTAAAAAGCTTCAAAAAATGAGATCAGACTCTGTCAATGAAACAGTAGGCTTCAGCACAATGGCTAGAAGTGGTGGTGATGCTTTGAGACCAACTTCAGCGTCATGTGGAATGAGATTACGGGTAACTTCTAGTGATACAGTATCTAAAGTGCATGGTGCATCTACTGTGAGAGGTGGCTTGATGAAGGAAAAAGTGGAGAAGCTTGAGACAGATGATCTAAAATGGACCGAGAGGCTTCCAGAATGTCCTGTCTACAGACCAACAAAGGAGGAGTTTGAGGATCCTCTGACTTATTTGCAGAAGATTTTCCCAGAAGCTTCAAAATATGGTATTTGCAAGATTGTATCTCCTTTGACAGCAACAGTTCCTGCTGGCGCTGTGTTGATGAAAGAGAAATCAAACTTTAAGTTCACTACCAGAGTACAACCCCTTCGACTTGCTGAGTGGGATTCTGATGATAAAGTTACATTCTTCATGAGTGGGAGGACCTATACATTTCGCGACTATGAGAAAATGGCGAACAAGGTATTTGCACGCAGATATTGCAGTGGTGGCTCTTTGCCCGACTCATTCTTGGAGAAAGAATTCTGGAAGGAAATTGCGTGTGGCAAGACTGAAACAGTTGAGTATGCGTGTGATGTAGATGGTAGCGCATTTTCATCTGCACCAGGTGACCCACTAGGAAGCAGCAAATGGAACTTGAATAAAGTTTCAAGGCTTCCTAAGTCTACCCTGCGCCTTCTTGAAACATCCATTCCGGGAGTCACAGAACCCATGCTTTACATCGGAATGCTTTTCAGTATGTTTGCCTGGCATGTTGAGGACCATTATTTGTACAGCATTAATTACCAACATTGTGGAGCATCAAAAACTTGGTATGGGATTCCAGGTTCCGCAGCTCTAAAATTTGAAAAGGTGGTTAAAGAGTGTGTGTACAATGATGATATTCTATCAACTAATGGAGAAGATGGTGCCTTTGACGTGCTTCTGGGGAAGACAACTATATTCCCCCCAAAGACTCTGTTGGATCATAATGTGCCAGTGTATAAAGCTGTGCAAAAACCTGGAGAATTTGTTGTCACATTCCCCAGGGCTTATCATGCTGGTTTCAGCCACGGTTTTAATTGTGGTGAGGCAGTGAACTTTGCGATGGGTGATTGGTTTCCATTTGGAGCTATTGCCAGTTGCCGGTATGCTCATCTTAACCGAGTACCGTTGCTTCCTCATGAAGAATTGATTTGTAAAGAGGCAATGCTCTTGAACTCAAGTTCCAAATCCGAGAATCTGGATCTTACACCTACAGAATTGTCAGGACAACGAAGCATCAAGACTGCATTTGTACACCTGATTCGTTTTCTTCATCTTGCTCGATGGTCTCTAATGAAGTCAGGATTATGCACAGGCCTTGTTTCGAATACATATGGAACCATAGTCTGCAGTTTGTGTAAACGGGATTGCTATTTGGCATTTATCAACTGCGAGTGTTACTCACACCCCGTTTGTCTACGTCATGATGTTAAAAAGCTTGACCTTCCATGTGGGACAACGCATACTCTTTACTTGAGAGACAACATTGAAGACATGGAAGCTGCTGCAATGAAGTTTGAGAAGGAAGATGGAGTTTCAGATTTGATTACAACTGATGAAGATTTATATAAGTATCCATCATCGATTACACTTCCAGCTGCGAAAGAAGACGGATATACACCGTATTCCACTATATACTTTGATTTCTATACTGAGGTAGAGATGACATCTCATGACCAGTTGCAATCGGGAAATCCCGTCATGAGTTATGAGGCAAACGCTTCATGTATCTCCTCAGTTGCTGATGATTATGAATGCTCTGATTACGTAAATAGACGAGCTAACTGTAGCAGCAGTAGTGATTCAAAGCTCTCGGAAGAAGTAGCATGCAGCAGTAGCAAAAAAACTCGGTTCTTCCCTGTGGTTCAAGATGAACAACTAGTTGCGGATCAGGAAAGTGATGGATCTGATTCCGAGTGTTTTAGAGTCAAACGCCGTTCTTCATTGAAGTTTGAGAACCGAACAGTTGTTCTAGACACAAGAGAGTCTGACCATCATCAGGAACTTAAGAGACTGAAGAAATCGCATCATCACGAAGGAAGATATAGTAGTAGCAGTAGTGTTAGTAGGCAAGAAGAAGAAGAAGATGAGTTAGTAATTTCAAACAGGAAAGAAACTCAGCAACAAAGTGACGTGAAGATGCAGAAGAAGAGGATCGAGAATCATTTTGGTGGCTTTAAACGTCTGAAAGTGAAAGGGCTAATAAAGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0000792 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009892 GO:0009893 GO:0009908 GO:0009987 GO:0010016 GO:0010033 GO:0010228 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010639 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032451 GO:0032452 GO:0032454 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0033044 GO:0033169 GO:0033993 GO:0035065 GO:0035067 GO:0036211 GO:0040007 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045815 GO:0048366 GO:0048367 GO:0048439 GO:0048518 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901983 GO:1901984 GO:1902275 GO:1905268 GO:2000756 GO:2000757 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
JmjC JmjN zf-C5HC2

Protein Analysis

787

Amino Acids

88.82

Weight (kDa)

6.62

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjN PF02375 104 - 136 1.4e-15 jmjN domain
JmjC PF02373 280 - 403 1.4e-38 JmjC domain, hydroxylase
zf-C5HC2 PF02928 500 - 551 8.1e-10 C5HC2 zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1034
AccI GTMKAC 3 cut(s) 315, 791, 1567
AccII CGCG 1 cut(s) 564
AciI CCGC 3 cut(s) 5, 957, 2036
AclWI GGATC 8 cut(s) 23, 338, 351, 1098, 1359, 2046, 2062, 2312
AcsI RAATTY 4 cut(s) 50, 647, 968, 1133
AcuI CTGAAG 3 cut(s) 97, 141, 2186
AdeI CACNNNGTG 1 cut(s) 734
AfaI GTAC 5 cut(s) 486, 899, 998, 1275, 1404
AfiI CCNNNNNNNGG 2 cut(s) 1251, 2149
AflII CTTAAG 1 cut(s) 2156
AhlI ACTAGT 1 cut(s) 2029
AjiI CACGTC 2 cut(s) 1045, 2284
AjnI CCWGG 5 cut(s) 730, 872, 949, 1126, 1151
AloI GAACNNNNNNTCC 4 cut(s) 937, 969, 1316, 1348
Alw26I GTCTC 5 cut(s) 142, 263, 1443, 1623, 2155
AlwI GGATC 8 cut(s) 23, 338, 351, 1098, 1359, 2046, 2062, 2312
AlwNI CAGNNNCTG 3 cut(s) 92, 431, 1892
AoxI GGCC 1 cut(s) 1465
ApeKI GCWGC 7 cut(s) 750, 959, 1652, 1655, 1748, 1941, 1980
ApoI RAATTY 4 cut(s) 50, 647, 968, 1133
AseI ATTAAT 1 cut(s) 906
Asp700I GAANNNNTTC 2 cut(s) 368, 647
AspLEI GCGC 3 cut(s) 440, 716, 801
AspS9I GGNCC 3 cut(s) 288, 549, 886
AsuC2I CCSGG 1 cut(s) 822
AsuHPI GGTGA 4 cut(s) 149, 746, 1205, 1229
AsuII TTCGAA 1 cut(s) 1475
AvaII GGWCC 3 cut(s) 288, 549, 886
BamHI GGATCC 1 cut(s) 343
BanI GGYRCC 1 cut(s) 1034
BarI GAAGNNNNNNTAC 4 cut(s) 477, 509, 1266, 1298
BbsI GAAGAC 3 cut(s) 1064, 1647, 1764
BbvI GCAGC 7 cut(s) 762, 971, 1639, 1642, 1735, 1953, 1992
BccI CCATC 9 cut(s) 35, 701, 1025, 1207, 1428, 1673, 1735, 2045, 2151
BceAI ACGGC 2 cut(s) 2070, 2344
BciT130I CCWGG 5 cut(s) 732, 874, 951, 1128, 1153
BciVI GTATCC 1 cut(s) 1734
BcnI CCSGG 1 cut(s) 822
BcoDI GTCTC 5 cut(s) 142, 263, 1443, 1623, 2155
BcuI ACTAGT 1 cut(s) 2029
BfaI CTAG 5 cut(s) 126, 192, 743, 2030, 2123
BfmI CTRYAG 4 cut(s) 316, 1362, 1498, 1936
BfoI RGCGCY 1 cut(s) 441
BfrI CTTAAG 1 cut(s) 2156
BfuI GTATCC 1 cut(s) 1734
BisI GCNGC 7 cut(s) 751, 960, 1653, 1656, 1749, 1942, 1981
BlsI GCNGC 7 cut(s) 752, 961, 1654, 1657, 1750, 1943, 1982
Bme1390I CCNGG 6 cut(s) 732, 822, 874, 951, 1128, 1153
Bme18I GGWCC 3 cut(s) 288, 549, 886
BmgBI CACGTC 2 cut(s) 1045, 2284
BmgT120I GGNCC 3 cut(s) 288, 549, 886
BmiI GGNNCC 4 cut(s) 345, 955, 1036, 1489
BmrFI CCNGG 6 cut(s) 732, 822, 874, 951, 1128, 1153
BmsI GCATC 6 cut(s) 130, 230, 935, 1395, 2185, 2280
BpiI GAAGAC 3 cut(s) 1064, 1647, 1764
BplI GAGNNNNNCTC 2 cut(s) 1535, 1567
BpmI CTGGAG 1 cut(s) 1149
Bpu10I CCTNAGC 1 cut(s) 36
Bpu14I TTCGAA 1 cut(s) 1475
BpuEI CTTGAG 3 cut(s) 287, 1312, 1645
BpuMI CCSGG 1 cut(s) 822
Bsa29I ATCGAT 1 cut(s) 1733
BsaAI YACGTR 1 cut(s) 1918
BsaI GGTCTC 2 cut(s) 142, 1443
BsaJI CCNNGG 3 cut(s) 1151, 1152, 1177
BsaXI ACNNNNNCTCC 2 cut(s) 1122, 1152
Bsc4I CCNNNNNNNGG 2 cut(s) 1251, 2149
Bse118I RCCGGY 1 cut(s) 1251
Bse1I ACTGG 3 cut(s) 1103, 1245, 1828
Bse3DI GCAATG 2 cut(s) 1320, 1665
BseBI CCWGG 5 cut(s) 732, 874, 951, 1128, 1153
BseCI ATCGAT 1 cut(s) 1733
BseDI CCNNGG 3 cut(s) 1151, 1152, 1177
BseGI GGATG 2 cut(s) 46, 812
BseLI CCNNNNNNNGG 2 cut(s) 1251, 2149
BseMI GCAATG 2 cut(s) 1320, 1665
BseMII CTCAG 4 cut(s) 495, 1794, 1899, 2282
BseNI ACTGG 3 cut(s) 1103, 1245, 1828
BseRI GAGGAG 2 cut(s) 347, 1873
BseXI GCAGC 7 cut(s) 762, 971, 1639, 1642, 1735, 1953, 1992
BsgI GTGCAG 1 cut(s) 711
Bsh1236I CGCG 1 cut(s) 564
BshFI GGCC 1 cut(s) 1467
BshNI GGYRCC 1 cut(s) 1034
BshVI ATCGAT 1 cut(s) 1733
BsiSI CCGG 2 cut(s) 821, 1252
BslFI GGGAC 1 cut(s) 1618
BslI CCNNNNNNNGG 2 cut(s) 1251, 2149
BsmAI GTCTC 5 cut(s) 142, 263, 1443, 1623, 2155
BsmFI GGGAC 1 cut(s) 1618
BsmI GAATGC 2 cut(s) 858, 1910
BsnI GGCC 1 cut(s) 1467
Bso31I GGTCTC 2 cut(s) 142, 1443
Bsp119I TTCGAA 1 cut(s) 1475
Bsp1407I TGTACA 3 cut(s) 897, 996, 1402
Bsp143I GATC 9 cut(s) 15, 83, 277, 343, 1090, 1351, 2038, 2054, 2304
Bsp68I TCGCGA 1 cut(s) 564
BspACI CCGC 3 cut(s) 5, 957, 2036
BspANI GGCC 1 cut(s) 1467
BspCNI CTCAG 4 cut(s) 496, 1795, 1898, 2281
BspDI ATCGAT 1 cut(s) 1733
BspFNI CGCG 1 cut(s) 564
BspHI TCATGA 5 cut(s) 537, 1288, 1573, 1822, 1851
BspLI GGNNCC 4 cut(s) 345, 955, 1036, 1489
BspMAI CTGCAG 1 cut(s) 1502
BspPI GGATC 8 cut(s) 23, 338, 351, 1098, 1359, 2046, 2062, 2312
BspT104I TTCGAA 1 cut(s) 1475
BspT107I GGYRCC 1 cut(s) 1034
BspTI CTTAAG 1 cut(s) 2156
BspTNI GGTCTC 2 cut(s) 142, 1443
BsrDI GCAATG 2 cut(s) 1320, 1665
BsrFI RCCGGY 1 cut(s) 1251
BsrGI TGTACA 3 cut(s) 897, 996, 1402
BsrI ACTGG 3 cut(s) 1103, 1245, 1828
BssAI RCCGGY 1 cut(s) 1251
BssECI CCNNGG 3 cut(s) 1151, 1152, 1177
BssMI GATC 9 cut(s) 15, 83, 277, 343, 1090, 1351, 2038, 2054, 2304
Bst2UI CCWGG 5 cut(s) 732, 874, 951, 1128, 1153
Bst6I CTCTTC 1 cut(s) 2294
BstAFI CTTAAG 1 cut(s) 2156
BstAPI GCANNNNNTGC 1 cut(s) 606
BstAUI TGTACA 3 cut(s) 897, 996, 1402
BstBAI YACGTR 1 cut(s) 1918
BstBI TTCGAA 1 cut(s) 1475
BstC8I GCNNGC 3 cut(s) 436, 598, 1978
BstDEI CTNAG 6 cut(s) 36, 504, 786, 1803, 1885, 2268
BstDSI CCRYGG 1 cut(s) 1177
BstEII GGTNACC 1 cut(s) 734
BstF5I GGATG 2 cut(s) 46, 812
BstFNI CGCG 1 cut(s) 564
BstH2I RGCGCY 1 cut(s) 441
BstHHI GCGC 3 cut(s) 440, 716, 801
BstKTI GATC 9 cut(s) 18, 86, 280, 346, 1093, 1354, 2041, 2057, 2307
BstMAI GTCTC 5 cut(s) 142, 263, 1443, 1623, 2155
BstMBI GATC 9 cut(s) 15, 83, 277, 343, 1090, 1351, 2038, 2054, 2304
BstMWI GCNNNNNNNGC 5 cut(s) 606, 615, 1163, 1986, 2356
BstNI CCWGG 5 cut(s) 732, 874, 951, 1128, 1153
BstNSI RCATGY 2 cut(s) 881, 1980
BstPI GGTNACC 1 cut(s) 734
BstSCI CCNGG 6 cut(s) 730, 820, 872, 949, 1126, 1151
BstSFI CTRYAG 4 cut(s) 316, 1362, 1498, 1936
BstSNI TACGTA 1 cut(s) 1918
BstUI CGCG 1 cut(s) 564
BstV1I GCAGC 7 cut(s) 762, 971, 1639, 1642, 1735, 1953, 1992
BstV2I GAAGAC 3 cut(s) 1064, 1647, 1764
BstX2I RGATCY 4 cut(s) 15, 343, 1351, 2054
BstXI CCANNNNNNTGG 1 cut(s) 920
BstYI RGATCY 4 cut(s) 15, 343, 1351, 2054
Bsu15I ATCGAT 1 cut(s) 1733
BsuI GTATCC 1 cut(s) 1734
BsuRI GGCC 1 cut(s) 1467
BsuTUI ATCGAT 1 cut(s) 1733
BtgI CCRYGG 1 cut(s) 1177
BtgZI GCGATG 1 cut(s) 1226
BtrI CACGTC 2 cut(s) 1045, 2284
BtsCI GGATG 2 cut(s) 46, 812
BtsI GCAGTG 2 cut(s) 616, 1206
BtsIMutI CAGTG 3 cut(s) 616, 1110, 1206
BtuMI TCGCGA 1 cut(s) 564
Cac8I GCNNGC 3 cut(s) 436, 598, 1978
CaiI CAGNNNCTG 3 cut(s) 92, 431, 1892
CciI TCATGA 5 cut(s) 537, 1288, 1573, 1822, 1851
CfoI GCGC 3 cut(s) 440, 716, 801
Cfr10I RCCGGY 1 cut(s) 1251
Cfr13I GGNCC 3 cut(s) 288, 549, 886
ClaI ATCGAT 1 cut(s) 1733
CseI GACGC 1 cut(s) 150
CsiI ACCWGGT 1 cut(s) 730
Csp6I GTAC 5 cut(s) 485, 898, 997, 1274, 1403
CviQI GTAC 5 cut(s) 485, 898, 997, 1274, 1403
DdeI CTNAG 6 cut(s) 36, 504, 786, 1803, 1885, 2268
DpnI GATC 9 cut(s) 17, 85, 279, 345, 1092, 1353, 2040, 2056, 2306
DpnII GATC 9 cut(s) 15, 83, 277, 343, 1090, 1351, 2038, 2054, 2304
DraI TTTAAA 1 cut(s) 2329
DraIII CACNNNGTG 1 cut(s) 734
Eam1104I CTCTTC 1 cut(s) 2294
EarI CTCTTC 1 cut(s) 2294
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 1918
Eco147I AGGCCT 1 cut(s) 1467
Eco31I GGTCTC 2 cut(s) 142, 1443
Eco47I GGWCC 3 cut(s) 288, 549, 886
Eco57I CTGAAG 3 cut(s) 97, 141, 2186
Eco91I GGTNACC 1 cut(s) 734
EcoO109I RGGNCCY 1 cut(s) 549
EcoO65I GGTNACC 1 cut(s) 734
EcoRI GAATTC 1 cut(s) 647
EcoRII CCWGG 5 cut(s) 730, 872, 949, 1126, 1151
FaqI GGGAC 1 cut(s) 1618
FauNDI CATATG 1 cut(s) 1483
FblI GTMKAC 3 cut(s) 315, 791, 1567
Fnu4HI GCNGC 7 cut(s) 751, 960, 1653, 1656, 1749, 1942, 1981
FokI GGATG 2 cut(s) 53, 799
Fsp4HI GCNGC 7 cut(s) 751, 960, 1653, 1656, 1749, 1942, 1981
FspBI CTAG 5 cut(s) 126, 192, 743, 2030, 2123
GlaI GCGC 3 cut(s) 439, 715, 800
GluI GCNGC 7 cut(s) 751, 960, 1653, 1656, 1749, 1942, 1981
GsuI CTGGAG 1 cut(s) 1149
HaeII RGCGCY 1 cut(s) 441
HaeIII GGCC 1 cut(s) 1467
HapII CCGG 2 cut(s) 821, 1252
HgaI GACGC 1 cut(s) 150
HhaI GCGC 3 cut(s) 440, 716, 801
Hin6I GCGC 3 cut(s) 438, 714, 799
HinP1I GCGC 3 cut(s) 438, 714, 799
HindIII AAGCTT 4 cut(s) 68, 263, 378, 1586
HpaII CCGG 2 cut(s) 821, 1252
HphI GGTGA 4 cut(s) 149, 746, 1205, 1229
Hpy166II GTNNAC 8 cut(s) 316, 474, 792, 997, 1204, 1405, 1511, 1568
Hpy8I GTNNAC 8 cut(s) 316, 474, 792, 997, 1204, 1405, 1511, 1568
HpyAV CCTTC 7 cut(s) 241, 503, 649, 812, 1604, 1666, 2180
HpyCH4IV ACGT 6 cut(s) 61, 1044, 1570, 1917, 2283, 2332
HpyF10VI GCNNNNNNNGC 5 cut(s) 606, 615, 1163, 1986, 2356
HpyF3I CTNAG 6 cut(s) 36, 504, 786, 1803, 1885, 2268
HpySE526I ACGT 6 cut(s) 61, 1044, 1570, 1917, 2283, 2332
HspAI GCGC 3 cut(s) 438, 714, 799
Kzo9I GATC 9 cut(s) 15, 83, 277, 343, 1090, 1351, 2038, 2054, 2304
LmnI GCTCC 2 cut(s) 923, 1235
Lsp1109I GCAGC 7 cut(s) 762, 971, 1639, 1642, 1735, 1953, 1992
LweI GCATC 6 cut(s) 130, 230, 935, 1395, 2185, 2280
MabI ACCWGGT 1 cut(s) 730
MaeI CTAG 5 cut(s) 126, 192, 743, 2030, 2123
MaeII ACGT 6 cut(s) 61, 1044, 1570, 1917, 2283, 2332
MaeIII GTNAC 7 cut(s) 184, 526, 734, 826, 1141, 1547, 2279
MalI GATC 9 cut(s) 17, 85, 279, 345, 1092, 1353, 2040, 2056, 2306
MboI GATC 9 cut(s) 15, 83, 277, 343, 1090, 1351, 2038, 2054, 2304
MflI RGATCY 4 cut(s) 15, 343, 1351, 2054
MlyI GAGTC 6 cut(s) 83, 623, 834, 1075, 2085, 2144
MmeI TCCRAC 1 cut(s) 1068
MroXI GAANNNNTTC 2 cut(s) 368, 647
MseI TTAA 8 cut(s) 468, 906, 984, 1185, 1266, 1581, 2157, 2328
MslI CAYNNNNRTG 2 cut(s) 851, 2319
MspA1I CMGCKG 1 cut(s) 1748
MspCI CTTAAG 1 cut(s) 2156
MspI CCGG 2 cut(s) 821, 1252
MspR9I CCNGG 6 cut(s) 732, 822, 874, 951, 1128, 1153
Mva1269I GAATGC 2 cut(s) 858, 1910
MvaI CCWGG 5 cut(s) 732, 874, 951, 1128, 1153
MvnI CGCG 1 cut(s) 564
MwoI GCNNNNNNNGC 5 cut(s) 606, 615, 1163, 1986, 2356
NciI CCSGG 1 cut(s) 822
NdeI CATATG 1 cut(s) 1483
NdeII GATC 9 cut(s) 15, 83, 277, 343, 1090, 1351, 2038, 2054, 2304
NlaIV GGNNCC 4 cut(s) 345, 955, 1036, 1489
NmuCI GTSAC 4 cut(s) 734, 826, 1141, 2279
NruI TCGCGA 1 cut(s) 564
NspI RCATGY 2 cut(s) 881, 1980
NspV TTCGAA 1 cut(s) 1475
PaeI GCATGC 1 cut(s) 1980
PagI TCATGA 5 cut(s) 537, 1288, 1573, 1822, 1851
PasI CCCWGGG 1 cut(s) 1152
PceI AGGCCT 1 cut(s) 1467
PctI GAATGC 2 cut(s) 858, 1910
PdmI GAANNNNTTC 2 cut(s) 368, 647
PfeI GAWTC 7 cut(s) 512, 946, 1345, 1411, 1952, 2060, 2311
PflFI GACNNNGTC 1 cut(s) 92
PfoI TCCNGGA 1 cut(s) 820
PkrI GCNGC 7 cut(s) 752, 961, 1654, 1657, 1750, 1943, 1982
PleI GAGTC 6 cut(s) 83, 623, 833, 1075, 2084, 2143
PpsI GAGTC 6 cut(s) 83, 623, 833, 1075, 2084, 2143
Ppu21I YACGTR 1 cut(s) 1918
PpuMI RGGWCCY 1 cut(s) 549
PshBI ATTAAT 1 cut(s) 906
Psp5II RGGWCCY 1 cut(s) 549
Psp6I CCWGG 5 cut(s) 730, 872, 949, 1126, 1151
PspEI GGTNACC 1 cut(s) 734
PspGI CCWGG 5 cut(s) 730, 872, 949, 1126, 1151
PspN4I GGNNCC 4 cut(s) 345, 955, 1036, 1489
PspPI GGNCC 3 cut(s) 288, 549, 886
PspPPI RGGWCCY 1 cut(s) 549
PstI CTGCAG 1 cut(s) 1502
PstNI CAGNNNCTG 3 cut(s) 92, 431, 1892
PsuI RGATCY 4 cut(s) 15, 343, 1351, 2054
PsyI GACNNNGTC 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 1748
RruI TCGCGA 1 cut(s) 564
RsaI GTAC 5 cut(s) 486, 899, 998, 1275, 1404
RsaNI GTAC 5 cut(s) 485, 898, 997, 1274, 1403
RseI CAYNNNNRTG 2 cut(s) 851, 2319
SaqAI TTAA 8 cut(s) 468, 906, 984, 1185, 1266, 1581, 2157, 2328
SatI GCNGC 7 cut(s) 751, 960, 1653, 1656, 1749, 1942, 1981
Sau3AI GATC 9 cut(s) 15, 83, 277, 343, 1090, 1351, 2038, 2054, 2304
Sau96I GGNCC 3 cut(s) 288, 549, 886
SchI GAGTC 6 cut(s) 83, 623, 834, 1075, 2085, 2144
ScrFI CCNGG 6 cut(s) 732, 822, 874, 951, 1128, 1153
SexAI ACCWGGT 1 cut(s) 730
SfaNI GCATC 6 cut(s) 130, 230, 935, 1395, 2185, 2280
SfcI CTRYAG 4 cut(s) 316, 1362, 1498, 1936
SfuI TTCGAA 1 cut(s) 1475
SinI GGWCC 3 cut(s) 288, 549, 886
SmiMI CAYNNNNRTG 2 cut(s) 851, 2319
SmlI CTYRAG 4 cut(s) 266, 1327, 1624, 2156
SmoI CTYRAG 4 cut(s) 266, 1327, 1624, 2156
SnaBI TACGTA 1 cut(s) 1918
SpeI ACTAGT 1 cut(s) 2029
SphI GCATGC 1 cut(s) 1980
SseBI AGGCCT 1 cut(s) 1467
SsiI CCGC 3 cut(s) 5, 957, 2036
SspMI CTAG 5 cut(s) 126, 192, 743, 2030, 2123
StuI AGGCCT 1 cut(s) 1467
StyD4I CCNGG 6 cut(s) 730, 820, 872, 949, 1126, 1151
TaiI ACGT 6 cut(s) 64, 1047, 1573, 1920, 2286, 2335
TaqI TCGA 5 cut(s) 496, 1432, 1475, 1733, 2307
TaqII GACCGA 1 cut(s) 305
TatI WGTACW 4 cut(s) 484, 897, 996, 1402
TfiI GAWTC 7 cut(s) 512, 946, 1345, 1411, 1952, 2060, 2311
Tru1I TTAA 8 cut(s) 468, 906, 984, 1185, 1266, 1581, 2157, 2328
Tru9I TTAA 8 cut(s) 468, 906, 984, 1185, 1266, 1581, 2157, 2328
TscAI CASTG 3 cut(s) 616, 1110, 1206
TseFI GTSAC 4 cut(s) 734, 826, 1141, 2279
TseI GCWGC 7 cut(s) 750, 959, 1652, 1655, 1748, 1941, 1980
Tsp45I GTSAC 4 cut(s) 734, 826, 1141, 2279
TspGWI ACGGA 1 cut(s) 1776
TspRI CASTG 3 cut(s) 616, 1110, 1206
Tth111I GACNNNGTC 1 cut(s) 92
Vha464I CTTAAG 1 cut(s) 2156
VpaK11BI GGWCC 3 cut(s) 288, 549, 886
VspI ATTAAT 1 cut(s) 906
XapI RAATTY 4 cut(s) 50, 647, 968, 1133
XbaI TCTAGA 1 cut(s) 2122
XceI RCATGY 2 cut(s) 881, 1980
XmiI GTMKAC 3 cut(s) 315, 791, 1567
XmnI GAANNNNTTC 2 cut(s) 368, 647
XspI CTAG 5 cut(s) 126, 192, 743, 2030, 2123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.