FvH4_5g22980

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007240
Physical Location & Seq
Forward (+)
14303599 .. 14310213
6615 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22980.t4

Sequence Viewer

Length: 2598 bp
ATGGTGGAAGGTAGAGTTTGTTTGTCCAAAGAGGCAAAAAGTGGATCAGAATCTCTGAAGCGAAGAAGGCTTCAGCCTATGAGATCAGAAAGCATTCCTGAGCCTGTAAGCTTTACTAATACGATGGCTAGAAGTGGAGGGGATGCTCTAAAAGCTCCCGCACCATGTGGTGTTAGAATACATGGAGGTGCAAATTCAGTTTTTCGGTCCAATGGTGCTTCACAGGGGAATGATGTCTTTTCAAAGCGTAAGGTGGATAAATTTGAAACAAATGATCTAGGCTGGACGGAGAAAATTCCCGAGTGTCCTGTATACTATCCAGCAAAGGAGGAGTTTGAGGATCCTTTAGTTTATTTACAGAAAATAGCTCCAGAAGCTTCCAAATATGGTATATGCAAGATTATCTCCCCTGTCAGTGCTTCTACTCCTGCTGGGATTGTATTGATGAGGGAAAAAGCAGGGTTTAAGTTCACAACTAGGGTACAACCTCTTCGCCTTGCTGAGTGGGACAATGATGACAAAGTCACTTTTTTCATGAGCGGAAGAAACTATACATTCCGTGACTTCGAGAAAATGGCGAACAAAGTTTTTGCTCGTAGATATTGTAGTTCTGGGTCTCTTCCTCCTACGTACTTGGAAAAGGAATTCTGGAAAGAAATTGGTTCTGGAAAGACAGAAAGTGTTGAATATGCATGTGATGTTGATGGTAGTGCATTTTCATCTTCTCCCAATGATCCACTTGGAAGTAGCAAATGGAATTTAAAGAATCTTTCAAGGCTACCCAAGTCCATTCTGCGTCTTCTGGAAAATGCAATTCCTGGTGTGACAGATCCTATGCTATACATTGGAATGATATTTAGCATGTTTGCCTGGCATGTGGAAGATCACTATTTGTACAGTATCAATTATCATCACTGTGGCGCATCCAAAACGTGGTATGGCATCCCGGGTCATGCTGCCCTACAATTTGAAAAGGTTGTCAAGGAACATGTCTACACTCATGATATTGTACAAAGTGACGGAGCGGATGGAGCTTTTGATGTCTTATTGGGAAAAACAACTCTGTTTCCTCCCAGTATATTGTTGGAACATGATGTACCTGTCTACAAGGCTGTCCAAAAGCCAGGAGAGTTTGTGGTTACATTCCCTAGAGCTTATCATGCTGGATTCAGTCATGGTTTCAATTGTGGTGAGGCAGTCAACTTTGCAATTGGTGATTGGTTCCCATTGGGTGCTATTGCTAGCCGGCGTTATACACTTCTTGATAGGATGCCTCTGCTTCCTCATGAAGAACTCTTGTGCAAAGAAGCCATGCTTCTTCATGCAAGTTTAGAGCTTGAAGATTCAGAACGTTCTTCTGCTGACTTGGTCTCCCATAATCGCGTTAAGGTTTCTTTTGTGAAATTGATGCGGTTCCAGCATCGTGCTCGCTGGATTTTAATGAAGTCTGGGGCATGCAATGGTGTCTTACCAAACACTTATGGAACTGTTCTCTGCAGCATATGCAAGCGTGATTGCTATCTCGCCTATATTAGTTGCAACTGTTATATGCATCATGTGTGCCTTCGCCATGATGTAAGGTCATTGGATTTGTCATGTCAGAGGAATCCTACTCTCTTTTTAAGGGAGGAGATTGCAGAAATGGAAGCTGTAGCCAGTAAGTTTGAAGAGGAAGAGGAAGTGTTAGAGGAGATTCAAGGTCAAGGTGAAAATGGTGATGACGTGTATTCATATCCATTAAATTGGTCTCAGATAGCTGAAGAAAAAGGATACTCCCCTTACTGCAATATAGAATTTGAGTTGAACCACGAACTCCCTGATACAACAGAACTCACTGGCACAACTTTGGATCAGTCACAAGAGCCAGCTGCACCTTGTTCTCATGGTGGAAAATATTCCAGTCCTGCAGTGTCAGAAGGTTCCATTTCATATATTGCATCTACACTTTGTTCTCTTTCTGAGCCTCTTGAGAGCTTGTGTGCAGCCAATCATGGAAATGCCAACTCTAAGACAGTGACTCCAACTTCCAAAAGGTCTGCATATGAGTCTTCTCGGTCCTCCCCATCGTATGATGAATGCTCAAGTGTACATCCAGGAAGTTCTAATGCATTGGAGCTTAGGCCTACAGATCAAGGCAGTGATGATTCTGATTCAGAGATATTTAGGGTTAAGCGCCGTTCTTCATTGAAAATGGAGAAAAGAACTATAAGTGATGCCTCACCATCAAATGTTTCTGAGAACAAGCAGGGATTTAAGCGACTGAAGAAACTGCAACCTGATATCAGATGTGGGAGGTCAGTGCCATTACAAAGCTCCAGCACTTCTAATAACAAAGGGGCTCCGGAAATTGCTTCAAGAGATGACAGATTTGCCAGAGGAAATACCATTTCTAGAGGAAGTACCGTTCCTTTGTCTATCAAGTTTAAGAAGTTGACCAATGAAGATTCTGTTAGGAGACAGCGAGATCACCATAGAAGTGATTTACGCCAGCTTGAGTTGGGAAAGAGCCGCAGGGAACCTCCGCCAATAGAGATTGGGCTAAAGCGCTTTAAGGTCAAAGGCCCTTCTTTCTTAGCTTCAGAGAACAGGTTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0000792 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009892 GO:0009893 GO:0009908 GO:0009987 GO:0010016 GO:0010033 GO:0010228 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010639 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032451 GO:0032452 GO:0032454 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0033044 GO:0033169 GO:0033993 GO:0035065 GO:0035067 GO:0036211 GO:0040007 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045815 GO:0048366 GO:0048367 GO:0048439 GO:0048518 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901983 GO:1901984 GO:1902275 GO:1905268 GO:2000756 GO:2000757 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
JmjC JmjN zf-C5HC2

Protein Analysis

866

Amino Acids

96.62

Weight (kDa)

7.29

Isoelectric Point (pI)

58.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjN PF02375 77 - 109 1.3e-14 jmjN domain
JmjC PF02373 253 - 376 2.5e-39 JmjC domain, hydroxylase
zf-C5HC2 PF02928 473 - 524 4.9e-09 C5HC2 zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 933
AccBSI CCGCTC 2 cut(s) 540, 1025
AccI GTMKAC 3 cut(s) 312, 993, 1104
AccII CGCG 1 cut(s) 1383
AccIII TCCGGA 1 cut(s) 2341
AciI CCGC 6 cut(s) 159, 540, 1025, 1411, 2509, 2522
AclI AACGTT 1 cut(s) 1351
AclWI GGATC 6 cut(s) 52, 335, 348, 728, 824, 1857
AcsI RAATTY 6 cut(s) 193, 260, 294, 644, 757, 1793
AcuI CTGAAG 5 cut(s) 56, 77, 1779, 2282, 2562
AdeI CACNNNGTG 1 cut(s) 167
AfaI GTAC 7 cut(s) 483, 632, 896, 1011, 1098, 2088, 2401
AfeI AGCGCT 1 cut(s) 2546
AfiI CCNNNNNNNGG 1 cut(s) 933
AflIII ACRYGT 2 cut(s) 988, 1722
AjiI CACGTC 1 cut(s) 1723
AjnI CCWGG 4 cut(s) 817, 869, 1123, 2092
AloI GAACNNNNNNTCC 2 cut(s) 2388, 2420
Alw21I GWGCWC 1 cut(s) 1429
Alw26I GTCTC 4 cut(s) 621, 1375, 1752, 2449
AlwI GGATC 6 cut(s) 52, 335, 348, 728, 824, 1857
Ama87I CYCGRG 2 cut(s) 299, 946
Aor13HI TCCGGA 1 cut(s) 2341
Aor51HI AGCGCT 1 cut(s) 2546
AoxI GGCC 2 cut(s) 2120, 2560
ApeKI GCWGC 4 cut(s) 956, 1497, 1868, 1982
ApoI RAATTY 6 cut(s) 193, 260, 294, 644, 757, 1793
Asp700I GAANNNNTTC 2 cut(s) 93, 1894
AspLEI GCGC 3 cut(s) 923, 2175, 2547
AspS9I GGNCC 3 cut(s) 207, 2055, 2561
AsuC2I CCSGG 2 cut(s) 947, 948
AsuHPI GGTGA 6 cut(s) 1202, 1226, 1718, 1727, 2211, 2459
AsuNHI GCTAGC 1 cut(s) 1241
AvaI CYCGRG 2 cut(s) 299, 946
AvaII GGWCC 2 cut(s) 207, 2055
BamHI GGATCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 2341
BarI GAAGNNNNNNTAC 4 cut(s) 474, 506, 535, 567
BbsI GAAGAC 2 cut(s) 791, 2040
Bbv12I GWGCWC 1 cut(s) 1429
BbvI GCAGC 4 cut(s) 943, 1509, 1855, 1994
BccI CCATC 5 cut(s) 118, 698, 1022, 2071, 2230
BceAI ACGGC 1 cut(s) 2160
BcgI CGANNNNNNTGC 2 cut(s) 1409, 1443
BciT130I CCWGG 4 cut(s) 819, 871, 1125, 2094
BciVI GTATCC 1 cut(s) 1763
BcnI CCSGG 2 cut(s) 947, 948
BcoDI GTCTC 4 cut(s) 621, 1375, 1752, 2449
BfaI CTAG 6 cut(s) 129, 278, 477, 1149, 1242, 2391
BfmI CTRYAG 4 cut(s) 1495, 1650, 1905, 2124
BfoI RGCGCY 2 cut(s) 2176, 2548
BfuI GTATCC 1 cut(s) 1763
BisI GCNGC 5 cut(s) 957, 1498, 1869, 1983, 2509
BlsI GCNGC 5 cut(s) 958, 1499, 1870, 1984, 2510
Bme1390I CCNGG 6 cut(s) 819, 871, 947, 948, 1125, 2094
Bme18I GGWCC 2 cut(s) 207, 2055
BmeT110I CYCGRG 2 cut(s) 299, 946
BmgBI CACGTC 1 cut(s) 1723
BmgT120I GGNCC 3 cut(s) 207, 2055, 2561
BmiI GGNNCC 6 cut(s) 342, 1223, 1415, 1921, 2340, 2517
BmrFI CCNGG 6 cut(s) 819, 871, 947, 948, 1125, 2094
BmrI ACTGGG 1 cut(s) 1068
BmsI GCATC 9 cut(s) 133, 932, 951, 1260, 1398, 1429, 1561, 1946, 2203
BmtI GCTAGC 1 cut(s) 1245
BmuI ACTGGG 1 cut(s) 1068
BpiI GAAGAC 2 cut(s) 791, 2040
BpmI CTGGAG 2 cut(s) 354, 2299
Bpu10I CCTNAGC 2 cut(s) 99, 2117
BpuEI CTTGAG 3 cut(s) 1988, 2065, 2513
BpuMI CCSGG 2 cut(s) 947, 948
BsaAI YACGTR 1 cut(s) 630
BsaBI GATNNNNATC 2 cut(s) 49, 1518
BsaI GGTCTC 3 cut(s) 621, 1375, 1752
BsaJI CCNNGG 1 cut(s) 946
BsaWI WCCGGW 1 cut(s) 2341
BsaXI ACNNNNNCTCC 6 cut(s) 1119, 1149, 1355, 1385, 2002, 2032
Bsc4I CCNNNNNNNGG 1 cut(s) 933
Bse118I RCCGGY 1 cut(s) 1245
Bse1I ACTGG 4 cut(s) 1074, 1656, 1840, 1899
Bse3DI GCAATG 1 cut(s) 1465
Bse8I GATNNNNATC 2 cut(s) 49, 1518
BseAI TCCGGA 1 cut(s) 2341
BseBI CCWGG 4 cut(s) 819, 871, 1125, 2094
BseDI CCNNGG 1 cut(s) 946
BseGI GGATG 6 cut(s) 148, 923, 942, 1033, 1275, 2089
BseJI GATNNNNATC 2 cut(s) 49, 1518
BseLI CCNNNNNNNGG 1 cut(s) 933
BseMI GCAATG 1 cut(s) 1465
BseMII CTCAG 5 cut(s) 90, 492, 1763, 1950, 2226
BseNI ACTGG 4 cut(s) 1074, 1656, 1840, 1899
BseRI GAGGAG 3 cut(s) 344, 1643, 1703
BseXI GCAGC 4 cut(s) 943, 1509, 1855, 1994
BseYI CCCAGC 1 cut(s) 431
BsgI GTGCAG 2 cut(s) 1854, 2001
Bsh1236I CGCG 1 cut(s) 1383
BshFI GGCC 2 cut(s) 2122, 2562
BsiHKAI GWGCWC 1 cut(s) 1429
BsiHKCI CYCGRG 2 cut(s) 299, 946
BsiSI CCGG 3 cut(s) 947, 1246, 2342
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 933
BsmAI GTCTC 4 cut(s) 621, 1375, 1752, 2449
BsmFI GGGAC 1 cut(s) 521
BsmI GAATGC 2 cut(s) 93, 2081
BsnI GGCC 2 cut(s) 2122, 2562
Bso31I GGTCTC 3 cut(s) 621, 1375, 1752
BsoBI CYCGRG 2 cut(s) 299, 946
Bsp1286I GDGCHC 2 cut(s) 1429, 2341
Bsp13I TCCGGA 1 cut(s) 2341
Bsp1407I TGTACA 3 cut(s) 894, 1009, 2086
BspACI CCGC 6 cut(s) 159, 540, 1025, 1411, 2509, 2522
BspANI GGCC 2 cut(s) 2122, 2562
BspCNI CTCAG 5 cut(s) 91, 493, 1762, 1951, 2227
BspEI TCCGGA 1 cut(s) 2341
BspFNI CGCG 1 cut(s) 1383
BspHI TCATGA 3 cut(s) 534, 1000, 1285
BspLI GGNNCC 6 cut(s) 342, 1223, 1415, 1921, 2340, 2517
BspMAI CTGCAG 2 cut(s) 1499, 1909
BspOI GCTAGC 1 cut(s) 1245
BspPI GGATC 6 cut(s) 52, 335, 348, 728, 824, 1857
BspTNI GGTCTC 3 cut(s) 621, 1375, 1752
BsrBI CCGCTC 2 cut(s) 540, 1025
BsrDI GCAATG 1 cut(s) 1465
BsrFI RCCGGY 1 cut(s) 1245
BsrGI TGTACA 3 cut(s) 894, 1009, 2086
BsrI ACTGG 4 cut(s) 1074, 1656, 1840, 1899
BssAI RCCGGY 1 cut(s) 1245
BssECI CCNNGG 1 cut(s) 946
BssNAI GTATAC 1 cut(s) 313
Bst1107I GTATAC 1 cut(s) 313
Bst2UI CCWGG 4 cut(s) 819, 871, 1125, 2094
Bst4CI ACNGT 6 cut(s) 899, 917, 1489, 1544, 2014, 2404
Bst6I CTCTTC 4 cut(s) 495, 624, 1662, 1668
BstAPI GCANNNNNTGC 1 cut(s) 1503
BstAUI TGTACA 3 cut(s) 894, 1009, 2086
BstBAI YACGTR 1 cut(s) 630
BstC8I GCNNGC 7 cut(s) 1243, 1247, 1429, 1456, 1508, 1866, 2489
BstDEI CTNAG 8 cut(s) 99, 501, 1749, 1959, 2007, 2117, 2235, 2572
BstF5I GGATG 6 cut(s) 148, 923, 942, 1033, 1275, 2089
BstFNI CGCG 1 cut(s) 1383
BstH2I RGCGCY 2 cut(s) 2176, 2548
BstHHI GCGC 3 cut(s) 923, 2175, 2547
BstMAI GTCTC 4 cut(s) 621, 1375, 1752, 2449
BstMWI GCNNNNNNNGC 7 cut(s) 67, 152, 374, 1031, 1160, 1417, 1503
BstNI CCWGG 4 cut(s) 819, 871, 1125, 2094
BstNSI RCATGY 5 cut(s) 696, 865, 878, 992, 1458
BstSCI CCNGG 6 cut(s) 817, 869, 945, 946, 1123, 2092
BstSFI CTRYAG 4 cut(s) 1495, 1650, 1905, 2124
BstSNI TACGTA 1 cut(s) 630
BstUI CGCG 1 cut(s) 1383
BstV1I GCAGC 4 cut(s) 943, 1509, 1855, 1994
BstV2I GAAGAC 2 cut(s) 791, 2040
BstX2I RGATCY 2 cut(s) 340, 829
BstXI CCANNNNNNTGG 1 cut(s) 1743
BstYI RGATCY 2 cut(s) 340, 829
BstZ17I GTATAC 1 cut(s) 313
BsuI GTATCC 1 cut(s) 1763
BsuRI GGCC 2 cut(s) 2122, 2562
BtrI CACGTC 1 cut(s) 1723
BtsCI GGATG 6 cut(s) 148, 923, 942, 1033, 1275, 2089
BtsI GCAGTG 2 cut(s) 1914, 2143
BtsIMutI CAGTG 7 cut(s) 421, 913, 1833, 1914, 2019, 2143, 2304
Cac8I GCNNGC 7 cut(s) 1243, 1247, 1429, 1456, 1508, 1866, 2489
CciI TCATGA 3 cut(s) 534, 1000, 1285
CfoI GCGC 3 cut(s) 923, 2175, 2547
Cfr10I RCCGGY 1 cut(s) 1245
Cfr13I GGNCC 3 cut(s) 207, 2055, 2561
Cfr9I CCCGGG 1 cut(s) 946
CseI GACGC 1 cut(s) 785
Csp6I GTAC 7 cut(s) 482, 631, 895, 1010, 1097, 2087, 2400
CviQI GTAC 7 cut(s) 482, 631, 895, 1010, 1097, 2087, 2400
DdeI CTNAG 8 cut(s) 99, 501, 1749, 1959, 2007, 2117, 2235, 2572
DraI TTTAAA 1 cut(s) 762
DraIII CACNNNGTG 1 cut(s) 167
Eam1104I CTCTTC 4 cut(s) 495, 624, 1662, 1668
EarI CTCTTC 4 cut(s) 495, 624, 1662, 1668
EciI GGCGGA 1 cut(s) 2511
Eco105I TACGTA 1 cut(s) 630
Eco147I AGGCCT 1 cut(s) 2122
Eco24I GRGCYC 1 cut(s) 2341
Eco31I GGTCTC 3 cut(s) 621, 1375, 1752
Eco32I GATATC 1 cut(s) 2281
Eco47I GGWCC 2 cut(s) 207, 2055
Eco47III AGCGCT 1 cut(s) 2546
Eco57I CTGAAG 5 cut(s) 56, 77, 1779, 2282, 2562
Eco88I CYCGRG 2 cut(s) 299, 946
EcoO109I RGGNCCY 1 cut(s) 2561
EcoRI GAATTC 1 cut(s) 644
EcoRII CCWGG 4 cut(s) 817, 869, 1123, 2092
EcoRV GATATC 1 cut(s) 2281
EcoT22I ATGCAT 3 cut(s) 694, 1554, 2110
EcoT38I GRGCYC 1 cut(s) 2341
FalI AAGNNNNNCTT 2 cut(s) 1299, 1331
FaqI GGGAC 1 cut(s) 521
FauI CCCGC 1 cut(s) 166
FauNDI CATATG 2 cut(s) 1502, 2041
FblI GTMKAC 3 cut(s) 312, 993, 1104
Fnu4HI GCNGC 5 cut(s) 957, 1498, 1869, 1983, 2509
FokI GGATG 6 cut(s) 155, 910, 929, 1040, 1282, 2076
FriOI GRGCYC 1 cut(s) 2341
Fsp4HI GCNGC 5 cut(s) 957, 1498, 1869, 1983, 2509
FspBI CTAG 6 cut(s) 129, 278, 477, 1149, 1242, 2391
GlaI GCGC 3 cut(s) 922, 2174, 2546
GluI GCNGC 5 cut(s) 957, 1498, 1869, 1983, 2509
GsaI CCCAGC 1 cut(s) 435
GsuI CTGGAG 2 cut(s) 354, 2299
HaeII RGCGCY 2 cut(s) 2176, 2548
HaeIII GGCC 2 cut(s) 2122, 2562
HapII CCGG 3 cut(s) 947, 1246, 2342
HgaI GACGC 1 cut(s) 785
HhaI GCGC 3 cut(s) 923, 2175, 2547
Hin6I GCGC 3 cut(s) 921, 2173, 2545
HinP1I GCGC 3 cut(s) 921, 2173, 2545
HincII GTYRAC 2 cut(s) 1201, 2433
HindII GTYRAC 2 cut(s) 1201, 2433
HindIII AAGCTT 2 cut(s) 109, 375
HpaII CCGG 3 cut(s) 947, 1246, 2342
HphI GGTGA 6 cut(s) 1202, 1226, 1718, 1727, 2211, 2459
Hpy166II GTNNAC 7 cut(s) 313, 471, 994, 1105, 1201, 2087, 2433
Hpy8I GTNNAC 7 cut(s) 313, 471, 994, 1105, 1201, 2087, 2433
HpyAV CCTTC 4 cut(s) 60, 1574, 1910, 2574
HpyCH4III ACNGT 6 cut(s) 899, 917, 1489, 1544, 2014, 2404
HpyCH4IV ACGT 4 cut(s) 629, 932, 1351, 1722
HpyF10VI GCNNNNNNNGC 7 cut(s) 67, 152, 374, 1031, 1160, 1417, 1503
HpyF3I CTNAG 8 cut(s) 99, 501, 1749, 1959, 2007, 2117, 2235, 2572
HpySE526I ACGT 4 cut(s) 629, 932, 1351, 1722
HspAI GCGC 3 cut(s) 921, 2173, 2545
Kpn2I TCCGGA 1 cut(s) 2341
KroI GCCGGC 1 cut(s) 1245
KroNI GCCGGC 1 cut(s) 1247
LmnI GCTCC 7 cut(s) 160, 373, 1022, 1031, 2113, 2318, 2344
Lsp1109I GCAGC 4 cut(s) 943, 1509, 1855, 1994
LweI GCATC 9 cut(s) 133, 932, 951, 1260, 1398, 1429, 1561, 1946, 2203
MaeI CTAG 6 cut(s) 129, 278, 477, 1149, 1242, 2391
MaeII ACGT 4 cut(s) 629, 932, 1351, 1722
MaeIII GTNAC 7 cut(s) 523, 560, 823, 1016, 1138, 1854, 2014
MbiI CCGCTC 2 cut(s) 540, 1025
MfeI CAATTG 2 cut(s) 1183, 1209
MflI RGATCY 2 cut(s) 340, 829
MhlI GDGCHC 2 cut(s) 1429, 2341
MlyI GAGTC 2 cut(s) 2011, 2054
MmeI TCCRAC 2 cut(s) 1065, 2045
Mph1103I ATGCAT 3 cut(s) 694, 1554, 2110
MroI TCCGGA 1 cut(s) 2341
MroNI GCCGGC 1 cut(s) 1245
MroXI GAANNNNTTC 2 cut(s) 93, 1894
MslI CAYNNNNRTG 5 cut(s) 186, 848, 915, 1995, 2475
MspA1I CMGCKG 1 cut(s) 1868
MspI CCGG 3 cut(s) 947, 1246, 2342
MspR9I CCNGG 6 cut(s) 819, 871, 947, 948, 1125, 2094
MunI CAATTG 2 cut(s) 1183, 1209
Mva1269I GAATGC 2 cut(s) 93, 2081
MvaI CCWGG 4 cut(s) 819, 871, 1125, 2094
MvnI CGCG 1 cut(s) 1383
MwoI GCNNNNNNNGC 7 cut(s) 67, 152, 374, 1031, 1160, 1417, 1503
NaeI GCCGGC 1 cut(s) 1247
NciI CCSGG 2 cut(s) 947, 948
NdeI CATATG 2 cut(s) 1502, 2041
NgoMIV GCCGGC 1 cut(s) 1245
NheI GCTAGC 1 cut(s) 1241
NlaIV GGNNCC 6 cut(s) 342, 1223, 1415, 1921, 2340, 2517
NmuCI GTSAC 6 cut(s) 523, 560, 823, 1016, 1854, 2014
NsiI ATGCAT 3 cut(s) 694, 1554, 2110
NspI RCATGY 5 cut(s) 696, 865, 878, 992, 1458
PaeI GCATGC 1 cut(s) 1458
PagI TCATGA 3 cut(s) 534, 1000, 1285
PceI AGGCCT 1 cut(s) 2122
PciI ACATGT 1 cut(s) 988
PctI GAATGC 2 cut(s) 93, 2081
PdiI GCCGGC 1 cut(s) 1247
PdmI GAANNNNTTC 2 cut(s) 93, 1894
PfeI GAWTC 9 cut(s) 50, 766, 1167, 1343, 1606, 1693, 2144, 2150, 2444
PflFI GACNNNGTC 2 cut(s) 521, 1367
PflMI CCANNNNNTGG 1 cut(s) 933
PfoI TCCNGGA 1 cut(s) 2092
PkrI GCNGC 5 cut(s) 958, 1499, 1870, 1984, 2510
PleI GAGTC 2 cut(s) 2011, 2053
PpsI GAGTC 2 cut(s) 2011, 2053
Ppu21I YACGTR 1 cut(s) 630
PscI ACATGT 1 cut(s) 988
Psp1406I AACGTT 1 cut(s) 1351
Psp6I CCWGG 4 cut(s) 817, 869, 1123, 2092
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 4 cut(s) 817, 869, 1123, 2092
PspN4I GGNNCC 6 cut(s) 342, 1223, 1415, 1921, 2340, 2517
PspPI GGNCC 3 cut(s) 207, 2055, 2561
PsrI GAACNNNNNNTAC 2 cut(s) 1080, 1112
PstI CTGCAG 2 cut(s) 1499, 1909
PsuI RGATCY 2 cut(s) 340, 829
PsyI GACNNNGTC 2 cut(s) 521, 1367
PvuII CAGCTG 1 cut(s) 1868
RsaI GTAC 7 cut(s) 483, 632, 896, 1011, 1098, 2088, 2401
RsaNI GTAC 7 cut(s) 482, 631, 895, 1010, 1097, 2087, 2400
RseI CAYNNNNRTG 5 cut(s) 186, 848, 915, 1995, 2475
SatI GCNGC 5 cut(s) 957, 1498, 1869, 1983, 2509
Sau96I GGNCC 3 cut(s) 207, 2055, 2561
SchI GAGTC 2 cut(s) 2011, 2054
ScrFI CCNGG 6 cut(s) 819, 871, 947, 948, 1125, 2094
SduI GDGCHC 2 cut(s) 1429, 2341
SfaNI GCATC 9 cut(s) 133, 932, 951, 1260, 1398, 1429, 1561, 1946, 2203
SfcI CTRYAG 4 cut(s) 1495, 1650, 1905, 2124
SinI GGWCC 2 cut(s) 207, 2055
SmaI CCCGGG 1 cut(s) 948
SmiMI CAYNNNNRTG 5 cut(s) 186, 848, 915, 1995, 2475
SmlI CTYRAG 3 cut(s) 1967, 2080, 2492
SmoI CTYRAG 3 cut(s) 1967, 2080, 2492
SnaBI TACGTA 1 cut(s) 630
SphI GCATGC 1 cut(s) 1458
SseBI AGGCCT 1 cut(s) 2122
SsiI CCGC 6 cut(s) 159, 540, 1025, 1411, 2509, 2522
SspI AATATT 1 cut(s) 1895
SspMI CTAG 6 cut(s) 129, 278, 477, 1149, 1242, 2391
StuI AGGCCT 1 cut(s) 2122
StyD4I CCNGG 6 cut(s) 817, 869, 945, 946, 1123, 2092
TaaI ACNGT 6 cut(s) 899, 917, 1489, 1544, 2014, 2404
TaiI ACGT 4 cut(s) 632, 935, 1354, 1725
TaqI TCGA 1 cut(s) 567
TaqII GACCGA 2 cut(s) 195, 2043
TatI WGTACW 3 cut(s) 894, 1009, 2086
TauI GCSGC 1 cut(s) 2511
TfiI GAWTC 9 cut(s) 50, 766, 1167, 1343, 1606, 1693, 2144, 2150, 2444
TscAI CASTG 7 cut(s) 421, 920, 1840, 1914, 2019, 2143, 2304
TseFI GTSAC 6 cut(s) 523, 560, 823, 1016, 1854, 2014
TseI GCWGC 4 cut(s) 956, 1497, 1868, 1982
Tsp45I GTSAC 6 cut(s) 523, 560, 823, 1016, 1854, 2014
TspGWI ACGGA 3 cut(s) 302, 548, 1035
TspMI CCCGGG 1 cut(s) 946
TspRI CASTG 7 cut(s) 421, 920, 1840, 1914, 2019, 2143, 2304
Tth111I GACNNNGTC 2 cut(s) 521, 1367
Van91I CCANNNNNTGG 1 cut(s) 933
VpaK11BI GGWCC 2 cut(s) 207, 2055
XapI RAATTY 6 cut(s) 193, 260, 294, 644, 757, 1793
XbaI TCTAGA 1 cut(s) 2390
XceI RCATGY 5 cut(s) 696, 865, 878, 992, 1458
XcmI CCANNNNNNNNNTGG 1 cut(s) 1081
XmaI CCCGGG 1 cut(s) 946
XmiI GTMKAC 3 cut(s) 312, 993, 1104
XmnI GAANNNNTTC 2 cut(s) 93, 1894
XspI CTAG 6 cut(s) 129, 278, 477, 1149, 1242, 2391
Zsp2I ATGCAT 3 cut(s) 694, 1554, 2110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.