AT5G48130

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012328
Physical Location & Seq
Forward (+)
19516102 .. 19518513
2412 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48130.1

Sequence Viewer

Length: 1878 bp
ATGGAAACTTTCAGCCTCAAGGATTGTTCGTCCGTCGCCTCCAGCCCGATTTCTTCTCCAAATATCAGTACCCTTTTGAAAATCAAAGTTCTTTCTTGGAGTAAAGAGACCGGTCTACCCGCGTCAGTACATGTTCGAGTTTGCAACAAGAGTTTTAACCTTCACAAGAGTCTCTTGTGTGCAAAGAGCGGATATTTTAAGGAAAGAGAGGATCAGCTATCGGAGATCGAGATACCACAAGAGTTTCCTGGTGGAGCAGAGACCTTTGAGAAGATTATGCTTTTCATTTATGGCTGTCCAACTTTAATACATCCTTTCAACATCGCTGGACTACGATGTGCAGCTCAATTTCTTGAAATGACAGAGCAACATTCGACGGGTAACCTCTGCGAGAGATTTGACCTTTATCTAAACCAAGTTGTCTTGCAAAACTGGGATGACACGTTAGTTGTTCTGAAGAAATGTCAGGATCTAGTGCCTTGGTCTGAAGATCTACTCATCGTGAGCCGGTGCATTGAGTCTCTGGCTTTCACGGCTTGTATGGAGATTCTCGATCCCGAAAGACGAAGAGAAAAGCCAGTCATCATGCTTGAAGGTATGGTGAATCAACCATGGGAATATACAAACATAGAGAGAATAATAAACCAAGATACTTGGATCAAAGACCTCACGGATCTTCCATTCGAATTCTTCAAAAAGATTATTGGGTCGCTTAGAAGACAAGGTATGAAAGAAAGATATGTAAGTCCATTGGTCGCCCTTTACGCCAGTAAATCTGTAATACCTGAAGGTCAAACTAATACTGATATTCTGCAAAGAGCTCTAGATCTGCTTCTTACAAGAGACAAGGCATATAGGTTTGTTCCAGTTGGGTTTTATTTTGCGTGTCTTGCACACAATTTGAAGCATGACACTGTGTTAAAGCTGCAAGATCAGATTGTATCTCTTCTTCACACTGCCCAACCCGAAAACTTTATATACCCGAAAGCCGGGAACAGGCAAGTTGCTTTCAGTCAGGAGTTGCTTACAATGGAAAGCCTGTTTTCAGTATATGTATCAACAGAATCGGAACGCCATCTTACTTCCTCCTCAAGCAACGTGAGAGTTGGAAAACTGTGGGATATTTTTCTCTCTCGTTTACCGTATGATCAAGAGATGAAAACTACAAGGTTCATTGAGCTGATTGAGACAGTCCCAATGTCATTCAGAGAGAGTCATGACCAACTTTACCTTGCAGTAAACGCATTTCTTCAGGTACATACAAATATATCTCAAGAAGAAAAAGGATCAATCTGCAGTTACCTAAACTGCCAAAAGCTATCACAAGAAGCGTCCCTCGAACTCGTTAAAAACGAGAAAATGCCATTACGTTTGGTTGTCCAAGCTCTCTTTATCCAACAGCTGAACACACACCAAGCTTTTAAAGACTGTTCGGACTCATTCAGATTCACAAACTCTGCAGACTTCTCTGGTAGTGTTGTCCCAAGCTCAAGACCCTTAACTTCCCAACAAAGCCCTTGCACTGATGATGAAACGGGGCCAAGAAACAGACCGTTATGCTTCTTGATGCAGAAAGATGCAACATTGGATGAGTTTGAGTCAACGAGCTTCAGAATCCATAACCTCGAAGAGCAACTAGTTTCTTTAAAGAAGAGCCTTCACTCCCACGACAACCTAAAGAAGCCAAATTGCCTTGGAAAAAGATCAGCGAGTAGAAACAAAAACACCTTTGGCCAAGTCACAACGGCTTGTATTGGCTCTGTAAGCTTTACTTCACAGAGAAAATATGCAAATAGGCTACTCCAGATTCTACGTAGAGTTAACTTGTTTGGAAGTAGAAAAACTAATAGATCGAAAGCAGGTGAGAGTGAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

625

Amino Acids

71.36

Weight (kDa)

8.03

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 43 - 122 3e-06 BTB/POZ domain
NPH3 PF03000 217 - 445 3.4e-45 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48130
fragaria_vesca FvH4_6g41250 FvH4_6g41250 FvH4_6g41250
malus_domestica MD09G1121300.v1.1 MD17G1112300.v1.1
prunus_persica Prupe.3G202400_v2.0.a1
pyrus_communis pycom09g04570 pycom17g10400
rosa_chinensis RchiOBHm_Chr2g0156801
rosa_laevigata RLG00000020943
rosa_multiflora Rmu_co8389443.1_g000001
rosa_roxburghii Rroxscaffold_2G00092710
rosa_rugosa Rorug02G0456300
rosa_samantha Rh2AG521900 Rh2BG535300 Rh2CG506800 Rh2DG544300
rosa_wichuraiana Rw2G043090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1850
Acc36I ACCTGC 1 cut(s) 1850
AccBSI CCGCTC 1 cut(s) 189
AccI GTMKAC 1 cut(s) 115
AccII CGCG 1 cut(s) 122
AciI CCGC 2 cut(s) 120, 189
AclWI GGATC 6 cut(s) 219, 477, 548, 665, 681, 1294
AcoI YGGCCR 1 cut(s) 1732
AcsI RAATTY 1 cut(s) 686
AcuI CTGAAG 5 cut(s) 476, 507, 807, 1235, 1594
AfaI GTAC 3 cut(s) 70, 129, 1257
AfiI CCNNNNNNNGG 2 cut(s) 989, 996
AflIII ACRYGT 2 cut(s) 130, 441
AgeI ACCGGT 1 cut(s) 110
AgsI TTSAA 6 cut(s) 79, 319, 356, 593, 694, 904
AhlI ACTAGT 1 cut(s) 1636
AjnI CCWGG 1 cut(s) 247
Alw21I GWGCWC 1 cut(s) 823
Alw26I GTCTC 6 cut(s) 101, 176, 254, 525, 837, 1181
AlwI GGATC 6 cut(s) 219, 477, 548, 665, 681, 1294
AoxI GGCC 2 cut(s) 1538, 1732
ApeKI GCWGC 2 cut(s) 341, 925
ApoI RAATTY 1 cut(s) 686
AsiGI ACCGGT 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 1538
AsuC2I CCSGG 1 cut(s) 991
AsuHPI GGTGA 2 cut(s) 613, 1874
AsuII TTCGAA 1 cut(s) 684
BalI TGGCCA 1 cut(s) 1734
BanII GRGCYC 1 cut(s) 823
BarI GAAGNNNNNNTAC 2 cut(s) 933, 965
BbsI GAAGAC 1 cut(s) 724
Bbv12I GWGCWC 1 cut(s) 823
BbvI GCAGC 2 cut(s) 353, 912
BccI CCATC 1 cut(s) 1083
BceAI ACGGC 2 cut(s) 549, 1761
BciT130I CCWGG 1 cut(s) 249
BclI TGATCA 1 cut(s) 1147
BcnI CCSGG 1 cut(s) 991
BcoDI GTCTC 6 cut(s) 101, 176, 254, 525, 837, 1181
BcuI ACTAGT 1 cut(s) 1636
BfaI CTAG 3 cut(s) 473, 824, 1637
BfmI CTRYAG 2 cut(s) 1294, 1458
BfuAI ACCTGC 1 cut(s) 1850
BglII AGATCT 2 cut(s) 490, 826
BisI GCNGC 2 cut(s) 342, 926
BlsI GCNGC 2 cut(s) 343, 927
Bme1390I CCNGG 2 cut(s) 249, 991
BmgT120I GGNCC 1 cut(s) 1538
BmiI GGNNCC 1 cut(s) 1539
BmrFI CCNGG 2 cut(s) 249, 991
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 2 cut(s) 1557, 1567
BmuI ACTGGG 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 724
BpmI CTGGAG 2 cut(s) 25, 1787
Bpu14I TTCGAA 1 cut(s) 684
BpuEI CTTGAG 3 cut(s) 1075, 1257, 1474
BpuMI CCSGG 1 cut(s) 991
BsaAI YACGTR 1 cut(s) 1814
BsaI GGTCTC 2 cut(s) 101, 254
BsaJI CCNNGG 3 cut(s) 479, 611, 1693
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 989, 996
Bse118I RCCGGY 2 cut(s) 110, 507
Bse1I ACTGG 4 cut(s) 437, 578, 768, 866
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 3 cut(s) 479, 611, 1693
BseGI GGATG 3 cut(s) 310, 442, 1594
BseLI CCNNNNNNNGG 2 cut(s) 989, 996
BseNI ACTGG 4 cut(s) 437, 578, 768, 866
BseRI GAGGAG 1 cut(s) 1078
BseXI GCAGC 2 cut(s) 353, 912
BsgI GTGCAG 1 cut(s) 360
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 2 cut(s) 1540, 1734
BshTI ACCGGT 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 823
BsiSI CCGG 3 cut(s) 111, 508, 990
BslFI GGGAC 3 cut(s) 1178, 1318, 1466
BslI CCNNNNNNNGG 2 cut(s) 989, 996
BsmAI GTCTC 6 cut(s) 101, 176, 254, 525, 837, 1181
BsmFI GGGAC 3 cut(s) 1178, 1318, 1466
BsnI GGCC 2 cut(s) 1540, 1734
Bso31I GGTCTC 2 cut(s) 101, 254
Bsp119I TTCGAA 1 cut(s) 684
Bsp1286I GDGCHC 1 cut(s) 823
Bsp19I CCATGG 1 cut(s) 611
BspACI CCGC 2 cut(s) 120, 189
BspANI GGCC 2 cut(s) 1540, 1734
BspFNI CGCG 1 cut(s) 122
BspHI TCATGA 1 cut(s) 1216
BspLI GGNNCC 1 cut(s) 1539
BspMAI CTGCAG 2 cut(s) 1298, 1462
BspMI ACCTGC 1 cut(s) 1850
BspPI GGATC 6 cut(s) 219, 477, 548, 665, 681, 1294
BspQI GCTCTTC 2 cut(s) 1623, 1646
BspT104I TTCGAA 1 cut(s) 684
BspTNI GGTCTC 2 cut(s) 101, 254
BsrBI CCGCTC 1 cut(s) 189
BsrFI RCCGGY 2 cut(s) 110, 507
BsrI ACTGG 4 cut(s) 437, 578, 768, 866
BssAI RCCGGY 2 cut(s) 110, 507
BssECI CCNNGG 3 cut(s) 479, 611, 1693
BssT1I CCWWGG 3 cut(s) 479, 611, 1693
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 6 cut(s) 916, 1116, 1143, 1192, 1430, 1554
Bst6I CTCTTC 4 cut(s) 562, 951, 1623, 1646
BstBAI YACGTR 1 cut(s) 1814
BstBI TTCGAA 1 cut(s) 684
BstDEI CTNAG 1 cut(s) 713
BstDSI CCRYGG 1 cut(s) 611
BstEII GGTNACC 1 cut(s) 380
BstF5I GGATG 3 cut(s) 310, 442, 1594
BstFNI CGCG 1 cut(s) 122
BstMAI GTCTC 6 cut(s) 101, 176, 254, 525, 837, 1181
BstMWI GCNNNNNNNGC 5 cut(s) 533, 764, 890, 1241, 1764
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 134
BstPI GGTNACC 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 247, 989
BstSFI CTRYAG 2 cut(s) 1294, 1458
BstSNI TACGTA 1 cut(s) 1814
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 353, 912
BstV2I GAAGAC 1 cut(s) 724
BstX2I RGATCY 4 cut(s) 469, 490, 673, 826
BstYI RGATCY 4 cut(s) 469, 490, 673, 826
BsuRI GGCC 2 cut(s) 1540, 1734
BtgI CCRYGG 1 cut(s) 611
BtgZI GCGATG 1 cut(s) 307
BtsCI GGATG 3 cut(s) 310, 442, 1594
BtsI GCAGTG 1 cut(s) 954
BtsIMutI CAGTG 3 cut(s) 912, 954, 1521
BveI ACCTGC 1 cut(s) 1850
CciI TCATGA 1 cut(s) 1216
Cfr10I RCCGGY 2 cut(s) 110, 507
Cfr13I GGNCC 1 cut(s) 1538
CseI GACGC 2 cut(s) 111, 1320
Csp6I GTAC 3 cut(s) 69, 128, 1256
CspAI ACCGGT 1 cut(s) 110
CviAII CATG 5 cut(s) 131, 586, 612, 908, 1217
CviQI GTAC 3 cut(s) 69, 128, 1256
DdeI CTNAG 1 cut(s) 713
DraI TTTAAA 2 cut(s) 1423, 1647
EaeI YGGCCR 1 cut(s) 1732
Eam1104I CTCTTC 4 cut(s) 562, 951, 1623, 1646
EarI CTCTTC 4 cut(s) 562, 951, 1623, 1646
Ecl136II GAGCTC 1 cut(s) 821
Eco105I TACGTA 1 cut(s) 1814
Eco130I CCWWGG 3 cut(s) 479, 611, 1693
Eco24I GRGCYC 1 cut(s) 823
Eco31I GGTCTC 2 cut(s) 101, 254
Eco53kI GAGCTC 1 cut(s) 821
Eco57I CTGAAG 5 cut(s) 476, 507, 807, 1235, 1594
Eco91I GGTNACC 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 821
EcoO65I GGTNACC 1 cut(s) 380
EcoRI GAATTC 1 cut(s) 686
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 3 cut(s) 479, 611, 1693
EcoT38I GRGCYC 1 cut(s) 823
ErhI CCWWGG 3 cut(s) 479, 611, 1693
FaeI CATG 5 cut(s) 134, 589, 615, 911, 1220
FalI AAGNNNNNCTT 4 cut(s) 158, 190, 1756, 1788
FaqI GGGAC 3 cut(s) 1178, 1318, 1466
FatI CATG 5 cut(s) 130, 585, 611, 907, 1216
FauI CCCGC 1 cut(s) 127
FbaI TGATCA 1 cut(s) 1147
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 342, 926
FokI GGATG 3 cut(s) 297, 449, 1601
FriOI GRGCYC 1 cut(s) 823
Fsp4HI GCNGC 2 cut(s) 342, 926
FspBI CTAG 3 cut(s) 473, 824, 1637
GluI GCNGC 2 cut(s) 342, 926
GsuI CTGGAG 2 cut(s) 25, 1787
HaeIII GGCC 2 cut(s) 1540, 1734
HapII CCGG 3 cut(s) 111, 508, 990
HgaI GACGC 2 cut(s) 111, 1320
Hin1II CATG 5 cut(s) 134, 589, 615, 911, 1220
HincII GTYRAC 2 cut(s) 1602, 1822
HindII GTYRAC 2 cut(s) 1602, 1822
HindIII AAGCTT 2 cut(s) 1416, 1765
HpaI GTTAAC 1 cut(s) 1822
HpaII CCGG 3 cut(s) 111, 508, 990
HphI GGTGA 2 cut(s) 613, 1874
Hpy166II GTNNAC 5 cut(s) 116, 1139, 1240, 1602, 1822
Hpy188I TCNGA 9 cut(s) 223, 456, 487, 936, 1069, 1208, 1435, 1445, 1613
Hpy8I GTNNAC 5 cut(s) 116, 1139, 1240, 1602, 1822
Hpy99I CGWCG 2 cut(s) 38, 379
HpyAV CCTTC 4 cut(s) 170, 587, 782, 1667
HpyCH4III ACNGT 6 cut(s) 916, 1116, 1143, 1192, 1430, 1554
HpyCH4IV ACGT 4 cut(s) 443, 1098, 1369, 1813
HpyF10VI GCNNNNNNNGC 5 cut(s) 533, 764, 890, 1241, 1764
HpyF3I CTNAG 1 cut(s) 713
HpySE526I ACGT 4 cut(s) 443, 1098, 1369, 1813
Hsp92II CATG 5 cut(s) 134, 589, 615, 911, 1220
Ksp22I TGATCA 1 cut(s) 1147
KspAI GTTAAC 1 cut(s) 1822
LguI GCTCTTC 2 cut(s) 1623, 1646
LmnI GCTCC 1 cut(s) 254
Lsp1109I GCAGC 2 cut(s) 353, 912
LweI GCATC 2 cut(s) 1557, 1567
MaeI CTAG 3 cut(s) 473, 824, 1637
MaeII ACGT 4 cut(s) 443, 1098, 1369, 1813
MaeIII GTNAC 3 cut(s) 380, 1298, 1738
MbiI CCGCTC 1 cut(s) 189
MflI RGATCY 4 cut(s) 469, 490, 673, 826
MhlI GDGCHC 1 cut(s) 823
MlsI TGGCCA 1 cut(s) 1734
MluCI AATT 4 cut(s) 347, 686, 898, 1687
MluNI TGGCCA 1 cut(s) 1734
MlyI GAGTC 5 cut(s) 178, 527, 1222, 1430, 1607
MmeI TCCRAC 3 cut(s) 323, 1087, 1420
MnlI CCTC 9 cut(s) 26, 49, 202, 395, 677, 1096, 1099, 1346, 1634
Mox20I TGGCCA 1 cut(s) 1734
MscI TGGCCA 1 cut(s) 1734
MseI TTAA 9 cut(s) 156, 198, 305, 920, 1347, 1422, 1499, 1646, 1821
Msp20I TGGCCA 1 cut(s) 1734
MspA1I CMGCKG 1 cut(s) 1402
MspI CCGG 3 cut(s) 111, 508, 990
MspR9I CCNGG 2 cut(s) 249, 991
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 5 cut(s) 533, 764, 890, 1241, 1764
NciI CCSGG 1 cut(s) 991
NcoI CCATGG 1 cut(s) 611
NlaIII CATG 5 cut(s) 134, 589, 615, 911, 1220
NlaIV GGNNCC 1 cut(s) 1539
NmuCI GTSAC 1 cut(s) 1738
NspI RCATGY 1 cut(s) 134
NspV TTCGAA 1 cut(s) 684
PagI TCATGA 1 cut(s) 1216
PaqCI CACCTGC 1 cut(s) 1850
PciI ACATGT 1 cut(s) 130
PciSI GCTCTTC 2 cut(s) 1623, 1646
PcsI WCGNNNNNNNCGW 1 cut(s) 1350
PfeI GAWTC 6 cut(s) 547, 604, 1064, 1446, 1614, 1807
PinAI ACCGGT 1 cut(s) 110
PkrI GCNGC 2 cut(s) 343, 927
PleI GAGTC 5 cut(s) 177, 526, 1221, 1430, 1606
PpsI GAGTC 5 cut(s) 177, 526, 1221, 1430, 1606
Ppu21I YACGTR 1 cut(s) 1814
PscI ACATGT 1 cut(s) 130
Psp124BI GAGCTC 1 cut(s) 823
Psp6I CCWGG 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 380
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 1539
PspPI GGNCC 1 cut(s) 1538
PstI CTGCAG 2 cut(s) 1298, 1462
PsuI RGATCY 4 cut(s) 469, 490, 673, 826
PvuII CAGCTG 1 cut(s) 1402
RsaI GTAC 3 cut(s) 70, 129, 1257
RsaNI GTAC 3 cut(s) 69, 128, 1256
SacI GAGCTC 1 cut(s) 823
SapI GCTCTTC 2 cut(s) 1623, 1646
SaqAI TTAA 9 cut(s) 156, 198, 305, 920, 1347, 1422, 1499, 1646, 1821
SatI GCNGC 2 cut(s) 342, 926
Sau96I GGNCC 1 cut(s) 1538
SchI GAGTC 5 cut(s) 178, 527, 1222, 1430, 1607
ScrFI CCNGG 2 cut(s) 249, 991
SduI GDGCHC 1 cut(s) 823
SfaNI GCATC 2 cut(s) 1557, 1567
SfcI CTRYAG 2 cut(s) 1294, 1458
SfuI TTCGAA 1 cut(s) 684
SmlI CTYRAG 4 cut(s) 17, 1090, 1272, 1489
SmoI CTYRAG 4 cut(s) 17, 1090, 1272, 1489
SnaBI TACGTA 1 cut(s) 1814
SpeI ACTAGT 1 cut(s) 1636
Sse9I AATT 4 cut(s) 347, 686, 898, 1687
SsiI CCGC 2 cut(s) 120, 189
SspMI CTAG 3 cut(s) 473, 824, 1637
SstI GAGCTC 1 cut(s) 823
StyD4I CCNGG 2 cut(s) 247, 989
StyI CCWWGG 3 cut(s) 479, 611, 1693
TaaI ACNGT 6 cut(s) 916, 1116, 1143, 1192, 1430, 1554
TaiI ACGT 4 cut(s) 446, 1101, 1372, 1816
TaqI TCGA 8 cut(s) 136, 228, 374, 552, 684, 1338, 1626, 1853
TasI AATT 4 cut(s) 347, 686, 898, 1687
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 6 cut(s) 547, 604, 1064, 1446, 1614, 1807
Tru1I TTAA 9 cut(s) 156, 198, 305, 920, 1347, 1422, 1499, 1646, 1821
Tru9I TTAA 9 cut(s) 156, 198, 305, 920, 1347, 1422, 1499, 1646, 1821
TscAI CASTG 3 cut(s) 919, 961, 1528
TseFI GTSAC 1 cut(s) 1738
TseI GCWGC 2 cut(s) 341, 925
Tsp45I GTSAC 1 cut(s) 1738
TspDTI ATGAA 5 cut(s) 274, 743, 1162, 1172, 1545
TspGWI ACGGA 2 cut(s) 22, 686
TspRI CASTG 3 cut(s) 919, 961, 1528
XapI RAATTY 1 cut(s) 686
XbaI TCTAGA 1 cut(s) 823
XceI RCATGY 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 115
XspI CTAG 3 cut(s) 473, 824, 1637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.