Rmu_co8389443.1_g000001

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8389443.1
OG0012328
Physical Location & Seq
Reverse (-)
2 .. 1179
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8389443.1_g000001.1.cds

Sequence Viewer

Length: 1178 bp
atgattgcattgtttatctatggctcctccacattgattgaccctttcaatgtggtagccctgagatgtgcagctgagtttctagaaatgacagaagaatactcttctggcaacctctgcgagcgctttgatctctacttaaaccaagtggtcatgcagagttggaatgacaccttaatagtactccaaaagtgccaaactttgcttccatggtccgaagacttgttaatcgtgagccgctgcattgagtgcctagcattcatggcttgtatggagattcttgatccagagggaaggcgtgacacaccggtactcacactggacacattgagcacccgaaattggagctgtgaaatggggaaggagattatgagtcaggacctctggatcaaggatctcattgctttaccatttggattcttcaagaggataatagggtccttgagaagacaaggtatgaaagaaaagtatttgagccccattattgttttctatactaacaaatgggtactttcaaagaagacaatccaattttgggagaactctggtcacagaattagggatgatcataaagtttcagttatcctccaaggtgttcttgatttgcttcccaagggggagaaggctagtcgagcaatccccgttgggttttactttgcaattctctctacatcccttgaagtaggtttgaaaggtgatagtaaggcaaagttggaagagcagattgtatctcaactgcactttgcccaactggaagactttatctttccaaaaagtgggactgagtcaatatcttctagcatggagctggctacaatggagagcataatttcaacatatgtatcagctaatttggacagggatcatagcctttctgcaggcaactcaattgttgcagaactgtgggatgcatatctttctcacatagctactgatccaaacatgcagcctaaaagattcatggaactcatcgaaagagtaccgatatcctacagacacaatcatgacaaactctacagggcaatgaacaccttcttgcaggtaactactatcattggaccttcctatcttcttagaattactctcaaacttgatgttgattcagtagtttatttgtattgttcaggcacacgcaactgtctgccaagaagagaagtgggcagtgtgcaagtacctca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

392

Amino Acids

44.67

Weight (kDa)

5.74

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48130
fragaria_vesca FvH4_6g41250 FvH4_6g41250 FvH4_6g41250
malus_domestica MD09G1121300.v1.1 MD17G1112300.v1.1
prunus_persica Prupe.3G202400_v2.0.a1
pyrus_communis pycom09g04570 pycom17g10400
rosa_chinensis RchiOBHm_Chr2g0156801
rosa_laevigata RLG00000020943
rosa_multiflora Rmu_co8389443.1_g000001
rosa_roxburghii Rroxscaffold_2G00092710
rosa_rugosa Rorug02G0456300
rosa_samantha Rh2AG521900 Rh2BG535300 Rh2CG506800 Rh2DG544300
rosa_wichuraiana Rw2G043090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1030
AccB7I CCANNNNNTGG 1 cut(s) 776
AciI CCGC 1 cut(s) 238
AclWI GGATC 5 cut(s) 278, 395, 402, 870, 929
AfaI GTAC 5 cut(s) 183, 312, 510, 981, 1173
AfeI AGCGCT 1 cut(s) 125
AfiI CCNNNNNNNGG 3 cut(s) 342, 535, 776
AgeI ACCGGT 1 cut(s) 307
AgsI TTSAA 6 cut(s) 49, 424, 516, 680, 691, 834
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AluBI AGCT 5 cut(s) 74, 348, 808, 848, 929
AluI AGCT 5 cut(s) 74, 348, 808, 848, 929
Alw21I GWGCWC 1 cut(s) 335
AlwI GGATC 5 cut(s) 278, 395, 402, 870, 929
Aor51HI AGCGCT 1 cut(s) 125
ApeKI GCWGC 3 cut(s) 71, 240, 946
AsiGI ACCGGT 1 cut(s) 307
Asp700I GAANNNNTTC 1 cut(s) 1031
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 4 cut(s) 213, 379, 438, 1058
AsuHPI GGTGA 1 cut(s) 707
AvaII GGWCC 4 cut(s) 213, 379, 438, 1058
BaeI ACNNNNGTAYC 2 cut(s) 825, 858
BanII GRGCYC 1 cut(s) 479
BbsI GAAGAC 4 cut(s) 225, 454, 527, 762
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 3 cut(s) 83, 227, 958
BclI TGATCA 1 cut(s) 565
BfaI CTAG 4 cut(s) 83, 254, 627, 798
BfmI CTRYAG 3 cut(s) 876, 991, 1015
BfoI RGCGCY 1 cut(s) 127
BfuAI ACCTGC 1 cut(s) 1030
BisI GCNGC 4 cut(s) 72, 238, 241, 947
BlsI GCNGC 4 cut(s) 73, 239, 242, 948
BmcAI AGTACT 1 cut(s) 183
Bme18I GGWCC 4 cut(s) 213, 379, 438, 1058
BmgT120I GGNCC 4 cut(s) 213, 379, 438, 1058
BmiI GGNNCC 2 cut(s) 25, 439
BmsI GCATC 1 cut(s) 898
BpiI GAAGAC 4 cut(s) 225, 454, 527, 762
BpuEI CTTGAG 1 cut(s) 463
BsaBI GATNNNNATC 1 cut(s) 912
BsaJI CCNNGG 3 cut(s) 209, 589, 612
BsaWI WCCGGW 1 cut(s) 307
Bsc4I CCNNNNNNNGG 3 cut(s) 342, 535, 776
Bse118I RCCGGY 1 cut(s) 307
Bse1I ACTGG 2 cut(s) 324, 756
Bse3DI GCAATG 2 cut(s) 399, 1029
Bse8I GATNNNNATC 1 cut(s) 912
BseDI CCNNGG 3 cut(s) 209, 589, 612
BseGI GGATG 3 cut(s) 568, 671, 913
BseJI GATNNNNATC 1 cut(s) 912
BseLI CCNNNNNNNGG 3 cut(s) 342, 535, 776
BseMI GCAATG 2 cut(s) 399, 1029
BseMII CTCAG 3 cut(s) 53, 66, 774
BseNI ACTGG 2 cut(s) 324, 756
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 3 cut(s) 83, 227, 958
BsgI GTGCAG 2 cut(s) 90, 722
BshTI ACCGGT 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 335
BsiSI CCGG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 793
BslI CCNNNNNNNGG 3 cut(s) 342, 535, 776
BsmFI GGGAC 1 cut(s) 793
BsmI GAATGC 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 335, 479
Bsp143I GATC 7 cut(s) 130, 283, 387, 394, 565, 862, 934
Bsp19I CCATGG 1 cut(s) 209
BspACI CCGC 1 cut(s) 238
BspCNI CTCAG 3 cut(s) 54, 67, 775
BspHI TCATGA 1 cut(s) 1003
BspLI GGNNCC 2 cut(s) 25, 439
BspMAI CTGCAG 1 cut(s) 880
BspMI ACCTGC 1 cut(s) 1030
BspPI GGATC 5 cut(s) 278, 395, 402, 870, 929
BspQI GCTCTTC 1 cut(s) 711
BsrDI GCAATG 2 cut(s) 399, 1029
BsrFI RCCGGY 1 cut(s) 307
BsrI ACTGG 2 cut(s) 324, 756
BssAI RCCGGY 1 cut(s) 307
BssECI CCNNGG 3 cut(s) 209, 589, 612
BssMI GATC 7 cut(s) 130, 283, 387, 394, 565, 862, 934
BssT1I CCWWGG 3 cut(s) 209, 589, 612
Bst4CI ACNGT 2 cut(s) 903, 1139
Bst6I CTCTTC 3 cut(s) 109, 711, 1144
BstAPI GCANNNNNTGC 2 cut(s) 117, 249
BstC8I GCNNGC 3 cut(s) 122, 810, 880
BstDEI CTNAG 4 cut(s) 62, 75, 783, 1073
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 3 cut(s) 568, 671, 913
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 7 cut(s) 133, 286, 390, 397, 568, 865, 937
BstMBI GATC 7 cut(s) 130, 283, 387, 394, 565, 862, 934
BstMWI GCNNNNNNNGC 4 cut(s) 117, 249, 263, 632
BstNSI RCATGY 1 cut(s) 946
BstSFI CTRYAG 3 cut(s) 876, 991, 1015
BstV1I GCAGC 3 cut(s) 83, 227, 958
BstV2I GAAGAC 4 cut(s) 225, 454, 527, 762
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BtgI CCRYGG 1 cut(s) 209
BtsCI GGATG 3 cut(s) 568, 671, 913
BtsI GCAGTG 1 cut(s) 1168
BtsIMutI CAGTG 2 cut(s) 317, 1168
BveI ACCTGC 1 cut(s) 1030
Cac8I GCNNGC 3 cut(s) 122, 810, 880
CciI TCATGA 1 cut(s) 1003
CfoI GCGC 1 cut(s) 126
Cfr10I RCCGGY 1 cut(s) 307
Cfr13I GGNCC 4 cut(s) 213, 379, 438, 1058
Csp6I GTAC 5 cut(s) 182, 311, 509, 980, 1172
CspAI ACCGGT 1 cut(s) 307
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 7 cut(s) 154, 210, 262, 802, 943, 961, 1004
CviQI GTAC 5 cut(s) 182, 311, 509, 980, 1172
DdeI CTNAG 4 cut(s) 62, 75, 783, 1073
DpnI GATC 7 cut(s) 132, 285, 389, 396, 567, 864, 936
DpnII GATC 7 cut(s) 130, 283, 387, 394, 565, 862, 934
Eam1104I CTCTTC 3 cut(s) 109, 711, 1144
EarI CTCTTC 3 cut(s) 109, 711, 1144
Eco130I CCWWGG 3 cut(s) 209, 589, 612
Eco24I GRGCYC 1 cut(s) 479
Eco32I GATATC 1 cut(s) 987
Eco47I GGWCC 4 cut(s) 213, 379, 438, 1058
Eco47III AGCGCT 1 cut(s) 125
EcoO109I RGGNCCY 2 cut(s) 379, 438
EcoRV GATATC 1 cut(s) 987
EcoT14I CCWWGG 3 cut(s) 209, 589, 612
EcoT22I ATGCAT 1 cut(s) 913
EcoT38I GRGCYC 1 cut(s) 479
ErhI CCWWGG 3 cut(s) 209, 589, 612
FaeI CATG 7 cut(s) 157, 213, 265, 805, 946, 964, 1007
FalI AAGNNNNNCTT 2 cut(s) 582, 614
FaqI GGGAC 1 cut(s) 793
FatI CATG 7 cut(s) 153, 209, 261, 801, 942, 960, 1003
FauNDI CATATG 1 cut(s) 838
FbaI TGATCA 1 cut(s) 565
Fnu4HI GCNGC 4 cut(s) 72, 238, 241, 947
FokI GGATG 3 cut(s) 575, 658, 920
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 4 cut(s) 72, 238, 241, 947
FspBI CTAG 4 cut(s) 83, 254, 627, 798
GlaI GCGC 1 cut(s) 125
GluI GCNGC 4 cut(s) 72, 238, 241, 947
HaeII RGCGCY 1 cut(s) 127
HapII CCGG 1 cut(s) 308
HhaI GCGC 1 cut(s) 126
Hin1II CATG 7 cut(s) 157, 213, 265, 805, 946, 964, 1007
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 6 cut(s) 277, 373, 417, 785, 957, 1100
HpaII CCGG 1 cut(s) 308
HphI GGTGA 1 cut(s) 707
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 9 cut(s) 83, 232, 281, 287, 377, 385, 424, 599, 1004
HpyAV CCTTC 5 cut(s) 288, 355, 616, 1042, 1071
HpyCH4III ACNGT 2 cut(s) 903, 1139
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 249, 263, 632
HpyF3I CTNAG 4 cut(s) 62, 75, 783, 1073
Hsp92II CATG 7 cut(s) 157, 213, 265, 805, 946, 964, 1007
HspAI GCGC 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 7 cut(s) 130, 283, 387, 394, 565, 862, 934
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 3 cut(s) 29, 345, 805
Lsp1109I GCAGC 3 cut(s) 83, 227, 958
LweI GCATC 1 cut(s) 898
MaeI CTAG 4 cut(s) 83, 254, 627, 798
MaeIII GTNAC 3 cut(s) 299, 548, 1042
MalI GATC 7 cut(s) 132, 285, 389, 396, 567, 864, 936
MboI GATC 7 cut(s) 130, 283, 387, 394, 565, 862, 934
MfeI CAATTG 1 cut(s) 888
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 335, 479
MluCI AATT 8 cut(s) 340, 530, 555, 660, 828, 850, 888, 1077
MlyI GAGTC 2 cut(s) 382, 794
MmeI TCCRAC 2 cut(s) 143, 693
MnlI CCTC 6 cut(s) 37, 125, 283, 392, 420, 596
Mph1103I ATGCAT 1 cut(s) 913
MroXI GAANNNNTTC 1 cut(s) 1031
MseI TTAA 3 cut(s) 140, 176, 227
MslI CAYNNNNRTG 1 cut(s) 1002
MspA1I CMGCKG 2 cut(s) 74, 240
MspI CCGG 1 cut(s) 308
MunI CAATTG 1 cut(s) 888
Mva1269I GAATGC 1 cut(s) 257
MwoI GCNNNNNNNGC 4 cut(s) 117, 249, 263, 632
NcoI CCATGG 1 cut(s) 209
NdeI CATATG 1 cut(s) 838
NdeII GATC 7 cut(s) 130, 283, 387, 394, 565, 862, 934
NlaIII CATG 7 cut(s) 157, 213, 265, 805, 946, 964, 1007
NlaIV GGNNCC 2 cut(s) 25, 439
NmuCI GTSAC 2 cut(s) 299, 548
NsiI ATGCAT 1 cut(s) 913
NspI RCATGY 1 cut(s) 946
PagI TCATGA 1 cut(s) 1003
PciSI GCTCTTC 1 cut(s) 711
PctI GAATGC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 1031
PfeI GAWTC 4 cut(s) 277, 417, 957, 1100
PflFI GACNNNGTC 1 cut(s) 784
PflMI CCANNNNNTGG 1 cut(s) 776
PinAI ACCGGT 1 cut(s) 307
PkrI GCNGC 4 cut(s) 73, 239, 242, 948
PleI GAGTC 2 cut(s) 381, 793
PpsI GAGTC 2 cut(s) 381, 793
PpuMI RGGWCCY 2 cut(s) 379, 438
Psp5II RGGWCCY 2 cut(s) 379, 438
PspN4I GGNNCC 2 cut(s) 25, 439
PspPI GGNCC 4 cut(s) 213, 379, 438, 1058
PspPPI RGGWCCY 2 cut(s) 379, 438
PstI CTGCAG 1 cut(s) 880
PsuI RGATCY 1 cut(s) 394
PsyI GACNNNGTC 1 cut(s) 784
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 5 cut(s) 183, 312, 510, 981, 1173
RsaNI GTAC 5 cut(s) 182, 311, 509, 980, 1172
RseI CAYNNNNRTG 1 cut(s) 1002
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 3 cut(s) 140, 176, 227
SatI GCNGC 4 cut(s) 72, 238, 241, 947
Sau3AI GATC 7 cut(s) 130, 283, 387, 394, 565, 862, 934
Sau96I GGNCC 4 cut(s) 213, 379, 438, 1058
ScaI AGTACT 1 cut(s) 183
SchI GAGTC 2 cut(s) 382, 794
SduI GDGCHC 2 cut(s) 335, 479
SfaNI GCATC 1 cut(s) 898
SfcI CTRYAG 3 cut(s) 876, 991, 1015
SinI GGWCC 4 cut(s) 213, 379, 438, 1058
SmiMI CAYNNNNRTG 1 cut(s) 1002
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
Sse9I AATT 8 cut(s) 340, 530, 555, 660, 828, 850, 888, 1077
SsiI CCGC 1 cut(s) 238
SspMI CTAG 4 cut(s) 83, 254, 627, 798
StyI CCWWGG 3 cut(s) 209, 589, 612
TaaI ACNGT 2 cut(s) 903, 1139
TaqI TCGA 2 cut(s) 631, 972
TasI AATT 8 cut(s) 340, 530, 555, 660, 828, 850, 888, 1077
TatI WGTACW 1 cut(s) 181
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 4 cut(s) 277, 417, 957, 1100
Tru1I TTAA 3 cut(s) 140, 176, 227
Tru9I TTAA 3 cut(s) 140, 176, 227
TscAI CASTG 2 cut(s) 324, 1168
TseFI GTSAC 2 cut(s) 299, 548
TseI GCWGC 3 cut(s) 71, 240, 946
Tsp45I GTSAC 2 cut(s) 299, 548
TspDTI ATGAA 4 cut(s) 250, 473, 949, 1040
TspRI CASTG 2 cut(s) 324, 1168
Tth111I GACNNNGTC 1 cut(s) 784
Van91I CCANNNNNTGG 1 cut(s) 776
VpaK11BI GGWCC 4 cut(s) 213, 379, 438, 1058
XbaI TCTAGA 1 cut(s) 82
XceI RCATGY 1 cut(s) 946
XmnI GAANNNNTTC 1 cut(s) 1031
XspI CTAG 4 cut(s) 83, 254, 627, 798
ZrmI AGTACT 1 cut(s) 183
Zsp2I ATGCAT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.