MD17G1112300.v1.1

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012328
Physical Location & Seq
Reverse (-)
9621291 .. 9624042
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1112300.v1.1.491

Sequence Viewer

Length: 2052 bp
ATGGAAGTTGCAAGCCCTTTGAAAGACAGCTCCGTGGCGTCGAGTCCTTTCTCTTCTCCGAACGTCTCCGCCTTACTCAAGATCAAGATTTTATCATGGACACAAGAAACCGGTTTGCCTGTTTCTGTTAGCGTTCGTGTTGGCGGAAAGATCTTCAATCTCCACAAGTTCCCACTTTTTTCGAAGAGTGGATATTTCAACAAGAGATTGAACGAATCAAATGAGATTGAGCTGCCACCGGGGTTCCCTGGCGGGCCAGAGACTTTCGAGATGATTGCACTCTTCATCTATGGCTCCTCCACCTTGATTGATCCATTCAATGTGGTAGCCCTCAGATGTGCAGCAGAGTTTCTTGAGATGACAGAAGACTACTCCTCCGGGAACCTCTGCGAGCGCTTTGATCTCTACTTAAACCAAGTGGTCATGCAGAGCTGGGATGACACCCTGATAGTACTTCAAAAGTGCCAAGCTTTACTTCCGTGGTCTGAAGACCTGCTCATCGTGAGCCGGTGCATAGAGTGCCTCGCCTTCATGGCCTGCATGGAGATCCTTGACCCAGAGAGAAGGCGTGACACACCTGTGCTCACGTTGGAAGCATTGAGCACGCGAAATTGGAGCTGTGAAATTGGGAGGGAGATTCTGAGTCAAGACCTTTGGATCAAGGATCTCATTGCGCTGCCGTTTGGATTTTTTAAGAGGATTATAGGATCTTTGAGAAGGCAAGGCATGAAGGAAAAGTACTTGAGCCCCATCATTGTTTTCTATGCTAACAAGTGGGTGCTTTCGACGAAAACCCTCCAATTCTGGGAGAATTCTGGTCAGAGAAGTGGGGATGATCACAAAGTTTCAGTCGTTTTACAAGGCGTTCTTGATTTGCTGCCGATGGGGGACAAGGCTAGTCGATCCATCCCAGTCGGGTTTTACTTCGCAATTCTTTCTAGATCCCTGGAAGTAGGTATGAGGATCGATAGTAGGGTGAAGCTGGAAGGGCAGATTGTATCTCTGCTGCACTTTGCTCAGCTGGAAGACTTCTTGTTTCCGAAAAGTGGGAGTGAGTCAATTTCTTCCAGCACGGAGCTTGCAACAATGGAGAGCATAATTTCAGCATATGTATCATCTACCATGGAGTCGGACAACAATCCTTCAGCAGGAAACACAATTGTTGCAGAATTGTGGGATGGATATCTGTCCCACATAGCTCCTGATCCAAACATGGAGCCTAAAAGGTTCATGGAACTCATTGAACGAGTCCCGATTTCATACAGACACTGCCATGATAAACTCTACAGGGCAATGAACGTCTTCTTAAAGGCGCACCCGAATACATCCCAGGAAGAGAAGTGGGCAGTCTGCAAGTACCTTAACTGCCAAAAACTGTCACAAGAGGCATGCATTGAGGCTGTTCAAAATGAATTGATGCCGCTGCGTTTGATTGTCCAGGCGCTTTTTGTCCAGCAGCTCAGCACACACCAAGCTTTCAAAGAATGCTCGGATTCGTTCAGATATGCACATTGTCCAGAGTTTTCAGGGAGCCTTGAAAGCTCCAGGTGTCCAAACTCAAAAAGCCAGAATCTCGGAGATAGTCCATATGTGGACGGAGCAGAGTCCGGAAGCAGACCCTTGAGCTTCTTGCTGCAGAAGGACAATGTAAATCAGAGGCCTGAGTTATCGAGGAAGGAATATGAGTCGACAAGCTTCAGAATTCAGAACCTCGAACAAGAGCTCATGTCCTTGAAGCGGAGCCTTCAATGGCAGAGCATTTCAAAGAAAGAGCCGGTCTCGACCACAGAACCTAGCATGAAATTGTACGGCAAAGAAGGTAGATCAACAAGCAAAAGAACTAACCCACTCGGACAAGTGACAAGTTGCATTGGCTCTGTGAATTTTGCCTCACAGAGAAAGTATGCCAGTAGACTGCTGAAGGTCCTTCGGCGGATCTCCTTGTTTGGAGGTAAAAAGCCAAAGAGAAAGCCAGCTGCCTCCTCTCCATGGCCTAAGCCAATGCAGCAGAATACTCGTCAGAATAAAATGTGCGAAAATCAGAACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

684

Amino Acids

77.21

Weight (kDa)

8.44

Isoelectric Point (pI)

59.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 217 - 464 5.2e-67 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48130
fragaria_vesca FvH4_6g41250 FvH4_6g41250 FvH4_6g41250
malus_domestica MD09G1121300.v1.1 MD17G1112300.v1.1
prunus_persica Prupe.3G202400_v2.0.a1
pyrus_communis pycom09g04570 pycom17g10400
rosa_chinensis RchiOBHm_Chr2g0156801
rosa_laevigata RLG00000020943
rosa_multiflora Rmu_co8389443.1_g000001
rosa_roxburghii Rroxscaffold_2G00092710
rosa_rugosa Rorug02G0456300
rosa_samantha Rh2AG521900 Rh2BG535300 Rh2CG506800 Rh2DG544300
rosa_wichuraiana Rw2G043090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 501
AccI GTMKAC 2 cut(s) 1688, 1912
AccII CGCG 1 cut(s) 607
AccIII TCCGGA 1 cut(s) 1607
AciI CCGC 6 cut(s) 69, 144, 252, 1421, 1738, 1933
AcsI RAATTY 3 cut(s) 811, 1701, 1882
AcuI CTGAAG 4 cut(s) 507, 1128, 1681, 1940
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 4 cut(s) 453, 740, 1358, 1808
AfeI AGCGCT 1 cut(s) 395
AfiI CCNNNNNNNGG 5 cut(s) 805, 1046, 1148, 1737, 1989
AgeI ACCGGT 1 cut(s) 110
AjnI CCWGG 5 cut(s) 247, 945, 1329, 1437, 1544
AjuI GAANNNNNNNTTGG 2 cut(s) 459, 491
AleI CACNNNNGTG 1 cut(s) 578
Alw21I GWGCWC 3 cut(s) 585, 605, 1725
Alw26I GTCTC 3 cut(s) 70, 254, 1783
AlwNI CAGNNNCTG 1 cut(s) 1269
Aor13HI TCCGGA 1 cut(s) 1607
Aor51HI AGCGCT 1 cut(s) 395
AoxI GGCC 4 cut(s) 254, 534, 1658, 1991
ApoI RAATTY 3 cut(s) 811, 1701, 1882
ArsI GACNNNNNNTTYG 2 cut(s) 834, 866
AsiGI ACCGGT 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 1301
AspLEI GCGC 4 cut(s) 396, 676, 1315, 1444
AspS9I GGNCC 2 cut(s) 254, 1924
AsuC2I CCSGG 2 cut(s) 240, 379
AsuHPI GGTGA 1 cut(s) 988
AsuII TTCGAA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 1924
BanII GRGCYC 2 cut(s) 749, 1725
BarI GAAGNNNNNNTAC 2 cut(s) 722, 754
BbsI GAAGAC 4 cut(s) 372, 495, 1032, 1294
Bbv12I GWGCWC 3 cut(s) 585, 605, 1725
BccI CCATC 4 cut(s) 758, 877, 914, 1172
BceAI ACGGC 2 cut(s) 664, 1825
BcgI CGANNNNNNTGC 4 cut(s) 257, 291, 1997, 2031
BciT130I CCWGG 5 cut(s) 249, 947, 1331, 1439, 1546
BclI TGATCA 1 cut(s) 835
BcnI CCSGG 2 cut(s) 240, 379
BcoDI GTCTC 3 cut(s) 70, 254, 1783
BfaI CTAG 3 cut(s) 897, 939, 1794
BfmI CTRYAG 2 cut(s) 1285, 1634
BfoI RGCGCY 2 cut(s) 397, 1445
BfuAI ACCTGC 1 cut(s) 501
BglI GCCNNNNNGGC 1 cut(s) 533
BglII AGATCT 1 cut(s) 150
BlpI GCTNAGC 2 cut(s) 1017, 1460
BmcAI AGTACT 2 cut(s) 453, 740
Bme1390I CCNGG 7 cut(s) 240, 249, 379, 947, 1331, 1439, 1546
Bme18I GGWCC 1 cut(s) 1924
BmgT120I GGNCC 2 cut(s) 254, 1924
BmiI GGNNCC 6 cut(s) 245, 295, 383, 1218, 1532, 1742
BmrFI CCNGG 7 cut(s) 240, 249, 379, 947, 1331, 1439, 1546
BmrI ACTGGG 1 cut(s) 905
BmsI GCATC 1 cut(s) 1407
BmuI ACTGGG 1 cut(s) 905
BpiI GAAGAC 4 cut(s) 372, 495, 1032, 1294
BplI GAGNNNNNCTC 2 cut(s) 1763, 1795
BpmI CTGGAG 1 cut(s) 1528
Bpu10I CCTNAGC 1 cut(s) 1995
Bpu1102I GCTNAGC 2 cut(s) 1017, 1460
Bpu14I TTCGAA 1 cut(s) 182
BpuEI CTTGAG 4 cut(s) 62, 374, 763, 1642
BpuMI CCSGG 2 cut(s) 240, 379
Bsa29I ATCGAT 1 cut(s) 966
BsaBI GATNNNNATC 1 cut(s) 1182
BsaHI GRCGYC 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 1783
BsaJI CCNNGG 8 cut(s) 33, 239, 247, 479, 945, 1122, 1329, 1988
BsaWI WCCGGW 2 cut(s) 110, 1607
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 5 cut(s) 805, 1046, 1148, 1737, 1989
Bse118I RCCGGY 3 cut(s) 110, 507, 1774
Bse1I ACTGG 2 cut(s) 911, 1908
Bse3DI GCAATG 2 cut(s) 669, 1299
Bse8I GATNNNNATC 1 cut(s) 1182
BseAI TCCGGA 1 cut(s) 1607
BseBI CCWGG 5 cut(s) 249, 947, 1331, 1439, 1546
BseCI ATCGAT 1 cut(s) 966
BseDI CCNNGG 8 cut(s) 33, 239, 247, 479, 945, 1122, 1329, 1988
BseGI GGATG 5 cut(s) 442, 838, 906, 1183, 1325
BseJI GATNNNNATC 1 cut(s) 1182
BseLI CCNNNNNNNGG 5 cut(s) 805, 1046, 1148, 1737, 1989
BseMI GCAATG 2 cut(s) 669, 1299
BseMII CTCAG 5 cut(s) 346, 632, 1031, 1474, 1653
BseNI ACTGG 2 cut(s) 911, 1908
BseRI GAGGAG 3 cut(s) 286, 364, 1972
BseYI CCCAGC 1 cut(s) 432
BsgI GTGCAG 2 cut(s) 360, 992
Bsh1236I CGCG 1 cut(s) 607
BshFI GGCC 4 cut(s) 256, 536, 1660, 1993
BshTI ACCGGT 1 cut(s) 110
BshVI ATCGAT 1 cut(s) 966
BsiHKAI GWGCWC 3 cut(s) 585, 605, 1725
BsiSI CCGG 6 cut(s) 111, 239, 378, 508, 1608, 1775
BslFI GGGAC 3 cut(s) 902, 1174, 1235
BslI CCNNNNNNNGG 5 cut(s) 805, 1046, 1148, 1737, 1989
BsmAI GTCTC 3 cut(s) 70, 254, 1783
BsmBI CGTCTC 1 cut(s) 70
BsmFI GGGAC 3 cut(s) 902, 1174, 1235
BsmI GAATGC 1 cut(s) 1490
BsnI GGCC 4 cut(s) 256, 536, 1660, 1993
Bso31I GGTCTC 1 cut(s) 1783
Bsp119I TTCGAA 1 cut(s) 182
Bsp1286I GDGCHC 4 cut(s) 585, 605, 749, 1725
Bsp13I TCCGGA 1 cut(s) 1607
Bsp1720I GCTNAGC 2 cut(s) 1017, 1460
Bsp19I CCATGG 2 cut(s) 1122, 1988
BspACI CCGC 6 cut(s) 69, 144, 252, 1421, 1738, 1933
BspANI GGCC 4 cut(s) 256, 536, 1660, 1993
BspCNI CTCAG 5 cut(s) 345, 633, 1030, 1473, 1654
BspDI ATCGAT 1 cut(s) 966
BspEI TCCGGA 1 cut(s) 1607
BspFNI CGCG 1 cut(s) 607
BspLI GGNNCC 6 cut(s) 245, 295, 383, 1218, 1532, 1742
BspMAI CTGCAG 1 cut(s) 1638
BspMI ACCTGC 1 cut(s) 501
BspT104I TTCGAA 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 1783
BsrDI GCAATG 2 cut(s) 669, 1299
BsrFI RCCGGY 3 cut(s) 110, 507, 1774
BsrI ACTGG 2 cut(s) 911, 1908
BssAI RCCGGY 3 cut(s) 110, 507, 1774
BssECI CCNNGG 8 cut(s) 33, 239, 247, 479, 945, 1122, 1329, 1988
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 2 cut(s) 1122, 1988
Bst2UI CCWGG 5 cut(s) 249, 947, 1331, 1439, 1546
Bst4CI ACNGT 1 cut(s) 1377
Bst6I CTCTTC 4 cut(s) 58, 179, 287, 1329
BstACI GRCGYC 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 519
BstBI TTCGAA 1 cut(s) 182
BstC8I GCNNGC 8 cut(s) 13, 254, 392, 538, 605, 1080, 1390, 1974
BstDEI CTNAG 6 cut(s) 332, 641, 1017, 1460, 1662, 1995
BstDSI CCRYGG 4 cut(s) 33, 479, 1122, 1988
BstENI CCTNNNNNAGG 1 cut(s) 1146
BstF5I GGATG 5 cut(s) 442, 838, 906, 1183, 1325
BstFNI CGCG 1 cut(s) 607
BstH2I RGCGCY 2 cut(s) 397, 1445
BstHHI GCGC 4 cut(s) 396, 676, 1315, 1444
BstMAI GTCTC 3 cut(s) 70, 254, 1783
BstMWI GCNNNNNNNGC 5 cut(s) 519, 533, 988, 1539, 2005
BstNI CCWGG 5 cut(s) 249, 947, 1331, 1439, 1546
BstNSI RCATGY 1 cut(s) 1392
BstSCI CCNGG 7 cut(s) 238, 247, 377, 945, 1329, 1437, 1544
BstSFI CTRYAG 2 cut(s) 1285, 1634
BstUI CGCG 1 cut(s) 607
BstV2I GAAGAC 4 cut(s) 372, 495, 1032, 1294
BstX2I RGATCY 6 cut(s) 150, 546, 664, 707, 941, 1935
BstYI RGATCY 6 cut(s) 150, 546, 664, 707, 941, 1935
Bsu15I ATCGAT 1 cut(s) 966
BsuRI GGCC 4 cut(s) 256, 536, 1660, 1993
BsuTUI ATCGAT 1 cut(s) 966
BtgI CCRYGG 4 cut(s) 33, 479, 1122, 1988
BtsCI GGATG 5 cut(s) 442, 838, 906, 1183, 1325
BtsI GCAGTG 1 cut(s) 1267
BtsIMutI CAGTG 2 cut(s) 1267, 2047
BveI ACCTGC 1 cut(s) 501
Cac8I GCNNGC 8 cut(s) 13, 254, 392, 538, 605, 1080, 1390, 1974
CaiI CAGNNNCTG 1 cut(s) 1269
CfoI GCGC 4 cut(s) 396, 676, 1315, 1444
Cfr10I RCCGGY 3 cut(s) 110, 507, 1774
Cfr13I GGNCC 2 cut(s) 254, 1924
ClaI ATCGAT 1 cut(s) 966
CseI GACGC 1 cut(s) 27
Csp6I GTAC 4 cut(s) 452, 739, 1357, 1807
CspAI ACCGGT 1 cut(s) 110
CspCI CAANNNNNGTGG 2 cut(s) 289, 324
CviQI GTAC 4 cut(s) 452, 739, 1357, 1807
DdeI CTNAG 6 cut(s) 332, 641, 1017, 1460, 1662, 1995
Eam1104I CTCTTC 4 cut(s) 58, 179, 287, 1329
EarI CTCTTC 4 cut(s) 58, 179, 287, 1329
EciI GGCGGA 3 cut(s) 58, 159, 1948
Ecl136II GAGCTC 1 cut(s) 1723
Eco130I CCWWGG 2 cut(s) 1122, 1988
Eco147I AGGCCT 1 cut(s) 1660
Eco24I GRGCYC 2 cut(s) 749, 1725
Eco31I GGTCTC 1 cut(s) 1783
Eco32I GATATC 1 cut(s) 1184
Eco47I GGWCC 1 cut(s) 1924
Eco47III AGCGCT 1 cut(s) 395
Eco53kI GAGCTC 1 cut(s) 1723
Eco57I CTGAAG 4 cut(s) 507, 1128, 1681, 1940
EcoICRI GAGCTC 1 cut(s) 1723
EcoNI CCTNNNNNAGG 1 cut(s) 1146
EcoO109I RGGNCCY 1 cut(s) 1924
EcoRI GAATTC 2 cut(s) 811, 1701
EcoRII CCWGG 5 cut(s) 247, 945, 1329, 1437, 1544
EcoRV GATATC 1 cut(s) 1184
EcoT14I CCWWGG 2 cut(s) 1122, 1988
EcoT22I ATGCAT 1 cut(s) 1394
EcoT38I GRGCYC 2 cut(s) 749, 1725
ErhI CCWWGG 2 cut(s) 1122, 1988
Esp3I CGTCTC 1 cut(s) 70
FalI AAGNNNNNCTT 4 cut(s) 459, 491, 852, 884
FaqI GGGAC 3 cut(s) 902, 1174, 1235
FauI CCCGC 1 cut(s) 245
FauNDI CATATG 2 cut(s) 1108, 1588
FbaI TGATCA 1 cut(s) 835
FblI GTMKAC 2 cut(s) 1688, 1912
FokI GGATG 5 cut(s) 449, 845, 893, 1190, 1312
FriOI GRGCYC 2 cut(s) 749, 1725
FspBI CTAG 3 cut(s) 897, 939, 1794
GlaI GCGC 4 cut(s) 395, 675, 1314, 1443
GsaI CCCAGC 1 cut(s) 436
GsuI CTGGAG 1 cut(s) 1528
HaeII RGCGCY 2 cut(s) 397, 1445
HaeIII GGCC 4 cut(s) 256, 536, 1660, 1993
HapII CCGG 6 cut(s) 111, 239, 378, 508, 1608, 1775
HgaI GACGC 1 cut(s) 27
HhaI GCGC 4 cut(s) 396, 676, 1315, 1444
Hin1I GRCGYC 1 cut(s) 38
Hin6I GCGC 4 cut(s) 394, 674, 1313, 1442
HinP1I GCGC 4 cut(s) 394, 674, 1313, 1442
HincII GTYRAC 1 cut(s) 1689
HindII GTYRAC 1 cut(s) 1689
HindIII AAGCTT 3 cut(s) 468, 1473, 1693
HpaII CCGG 6 cut(s) 111, 239, 378, 508, 1608, 1775
HphI GGTGA 1 cut(s) 988
Hpy166II GTNNAC 3 cut(s) 1594, 1689, 1913
Hpy8I GTNNAC 3 cut(s) 1594, 1689, 1913
Hpy99I CGWCG 2 cut(s) 43, 790
HpyCH4III ACNGT 1 cut(s) 1377
HpyCH4IV ACGT 3 cut(s) 63, 587, 1299
HpyF10VI GCNNNNNNNGC 5 cut(s) 519, 533, 988, 1539, 2005
HpyF3I CTNAG 6 cut(s) 332, 641, 1017, 1460, 1662, 1995
HpySE526I ACGT 3 cut(s) 63, 587, 1299
Hsp92I GRCGYC 1 cut(s) 38
HspAI GCGC 4 cut(s) 394, 674, 1313, 1442
Kpn2I TCCGGA 1 cut(s) 1607
Ksp22I TGATCA 1 cut(s) 835
LweI GCATC 1 cut(s) 1407
MaeI CTAG 3 cut(s) 897, 939, 1794
MaeII ACGT 3 cut(s) 63, 587, 1299
MaeIII GTNAC 3 cut(s) 569, 1377, 1858
MfeI CAATTG 1 cut(s) 1158
MflI RGATCY 6 cut(s) 150, 546, 664, 707, 941, 1935
MhlI GDGCHC 4 cut(s) 585, 605, 749, 1725
MlyI GAGTC 7 cut(s) 52, 652, 1064, 1136, 1257, 1613, 1694
MmeI TCCRAC 2 cut(s) 570, 1110
Mph1103I ATGCAT 1 cut(s) 1394
MroI TCCGGA 1 cut(s) 1607
MroXI GAANNNNTTC 1 cut(s) 1301
MseI TTAA 4 cut(s) 410, 693, 1307, 1362
MslI CAYNNNNRTG 2 cut(s) 578, 1272
MspA1I CMGCKG 3 cut(s) 1021, 1423, 1976
MspI CCGG 6 cut(s) 111, 239, 378, 508, 1608, 1775
MspR9I CCNGG 7 cut(s) 240, 249, 379, 947, 1331, 1439, 1546
MunI CAATTG 1 cut(s) 1158
Mva1269I GAATGC 1 cut(s) 1490
MvaI CCWGG 5 cut(s) 249, 947, 1331, 1439, 1546
MvnI CGCG 1 cut(s) 607
MwoI GCNNNNNNNGC 5 cut(s) 519, 533, 988, 1539, 2005
NciI CCSGG 2 cut(s) 240, 379
NcoI CCATGG 2 cut(s) 1122, 1988
NdeI CATATG 2 cut(s) 1108, 1588
NlaIV GGNNCC 6 cut(s) 245, 295, 383, 1218, 1532, 1742
NmuCI GTSAC 3 cut(s) 569, 1377, 1858
NsiI ATGCAT 1 cut(s) 1394
NspI RCATGY 1 cut(s) 1392
NspV TTCGAA 1 cut(s) 182
OliI CACNNNNGTG 1 cut(s) 578
PaeI GCATGC 1 cut(s) 1392
PceI AGGCCT 1 cut(s) 1660
PctI GAATGC 1 cut(s) 1490
PdmI GAANNNNTTC 1 cut(s) 1301
PfeI GAWTC 4 cut(s) 215, 637, 1493, 1570
PfoI TCCNGGA 1 cut(s) 377
PinAI ACCGGT 1 cut(s) 110
PleI GAGTC 7 cut(s) 51, 651, 1063, 1135, 1256, 1612, 1693
PpsI GAGTC 7 cut(s) 51, 651, 1063, 1135, 1256, 1612, 1693
PpuMI RGGWCCY 1 cut(s) 1924
Psp124BI GAGCTC 1 cut(s) 1725
Psp5II RGGWCCY 1 cut(s) 1924
Psp6I CCWGG 5 cut(s) 247, 945, 1329, 1437, 1544
PspFI CCCAGC 1 cut(s) 432
PspGI CCWGG 5 cut(s) 247, 945, 1329, 1437, 1544
PspN4I GGNNCC 6 cut(s) 245, 295, 383, 1218, 1532, 1742
PspPI GGNCC 2 cut(s) 254, 1924
PspPPI RGGWCCY 1 cut(s) 1924
PstI CTGCAG 1 cut(s) 1638
PstNI CAGNNNCTG 1 cut(s) 1269
PsuI RGATCY 6 cut(s) 150, 546, 664, 707, 941, 1935
PvuII CAGCTG 2 cut(s) 1021, 1976
RsaI GTAC 4 cut(s) 453, 740, 1358, 1808
RsaNI GTAC 4 cut(s) 452, 739, 1357, 1807
RseI CAYNNNNRTG 2 cut(s) 578, 1272
SacI GAGCTC 1 cut(s) 1725
SalI GTCGAC 1 cut(s) 1687
SaqAI TTAA 4 cut(s) 410, 693, 1307, 1362
Sau96I GGNCC 2 cut(s) 254, 1924
ScaI AGTACT 2 cut(s) 453, 740
SchI GAGTC 7 cut(s) 52, 652, 1064, 1136, 1257, 1613, 1694
ScrFI CCNGG 7 cut(s) 240, 249, 379, 947, 1331, 1439, 1546
SduI GDGCHC 4 cut(s) 585, 605, 749, 1725
SfaNI GCATC 1 cut(s) 1407
SfcI CTRYAG 2 cut(s) 1285, 1634
SfuI TTCGAA 1 cut(s) 182
SinI GGWCC 1 cut(s) 1924
SmiMI CAYNNNNRTG 2 cut(s) 578, 1272
SmlI CTYRAG 4 cut(s) 77, 353, 742, 1621
SmoI CTYRAG 4 cut(s) 77, 353, 742, 1621
SphI GCATGC 1 cut(s) 1392
SseBI AGGCCT 1 cut(s) 1660
SsiI CCGC 6 cut(s) 69, 144, 252, 1421, 1738, 1933
SspMI CTAG 3 cut(s) 897, 939, 1794
SstI GAGCTC 1 cut(s) 1725
StuI AGGCCT 1 cut(s) 1660
StyD4I CCNGG 7 cut(s) 238, 247, 377, 945, 1329, 1437, 1544
StyI CCWWGG 2 cut(s) 1122, 1988
TaaI ACNGT 1 cut(s) 1377
TaiI ACGT 3 cut(s) 66, 590, 1302
TatI WGTACW 2 cut(s) 451, 738
TauI GCSGC 1 cut(s) 1423
TfiI GAWTC 4 cut(s) 215, 637, 1493, 1570
Tru1I TTAA 4 cut(s) 410, 693, 1307, 1362
Tru9I TTAA 4 cut(s) 410, 693, 1307, 1362
TscAI CASTG 1 cut(s) 1274
TseFI GTSAC 3 cut(s) 569, 1377, 1858
Tsp45I GTSAC 3 cut(s) 569, 1377, 1858
TspDTI ATGAA 8 cut(s) 274, 520, 743, 1219, 1248, 1310, 1425, 1814
TspGWI ACGGA 4 cut(s) 22, 468, 1088, 1611
TspRI CASTG 1 cut(s) 1274
VpaK11BI GGWCC 1 cut(s) 1924
XagI CCTNNNNNAGG 1 cut(s) 1146
XapI RAATTY 3 cut(s) 811, 1701, 1882
XbaI TCTAGA 1 cut(s) 938
XceI RCATGY 1 cut(s) 1392
XmiI GTMKAC 2 cut(s) 1688, 1912
XmnI GAANNNNTTC 1 cut(s) 1301
XspI CTAG 3 cut(s) 897, 939, 1794
ZrmI AGTACT 2 cut(s) 453, 740
Zsp2I ATGCAT 1 cut(s) 1394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.