pycom09g04570

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012328
Physical Location & Seq
Reverse (-)
3383986 .. 3384772
787 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g04570.1

Sequence Viewer

Length: 432 bp
ATGAGTGGATACTTCAACAAAAGATTGAACGAATCAAATGAGATTGATCTTCCACCGGGCTTTCCCGGAGGGCCAGAGACCTTTGAGATGATTGCACTCTTCATCTATGGCTCCTCCACATTGATTGATCCATTCAATGTGGTAGCCCTCAGATTTGCAGCAGAGTTTCTTGAGATGACAGAAGACTACTCCTCCAGGAACCTCTGTGAACGCTTTGATCTCTACTTGAACCAAGTGGTGATGCAGAGCTGGGATGACACCGTAATAGTACTTCAAAAGTGCCAAACTTTGCTTCCGAGGTCTGAAGACCTGCTCATCGTGAGCCGGTGCATAGAGTGCCTCGCCTTCATGGCCTGCATGGAGATCCTTGACCCCGAGAGAAGGCGTGAAACGCCTGTGCTCACATTGGAACCATTGGGCACGGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

144

Amino Acids

16.33

Weight (kDa)

4.32

Isoelectric Point (pI)

71.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48130
fragaria_vesca FvH4_6g41250 FvH4_6g41250 FvH4_6g41250
malus_domestica MD09G1121300.v1.1 MD17G1112300.v1.1
prunus_persica Prupe.3G202400_v2.0.a1
pyrus_communis pycom09g04570 pycom17g10400
rosa_chinensis RchiOBHm_Chr2g0156801
rosa_laevigata RLG00000020943
rosa_multiflora Rmu_co8389443.1_g000001
rosa_roxburghii Rroxscaffold_2G00092710
rosa_rugosa Rorug02G0456300
rosa_samantha Rh2AG521900 Rh2BG535300 Rh2CG506800 Rh2DG544300
rosa_wichuraiana Rw2G043090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 318
AclWI GGATC 2 cut(s) 122, 358
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 381
AgsI TTSAA 5 cut(s) 16, 28, 136, 229, 275
AjnI CCWGG 1 cut(s) 194
AjuI GAANNNNNNNTTGG 2 cut(s) 276, 308
AluBI AGCT 1 cut(s) 249
AluI AGCT 1 cut(s) 249
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 2 cut(s) 122, 358
Ama87I CYCGRG 1 cut(s) 374
AoxI GGCC 2 cut(s) 71, 351
ApeKI GCWGC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 71
AsuC2I CCSGG 2 cut(s) 57, 66
AsuHPI GGTGA 1 cut(s) 250
AvaI CYCGRG 1 cut(s) 374
BaeGI GKGCMC 1 cut(s) 422
BarI GAAGNNNNNNTAC 2 cut(s) 255, 287
BbsI GAAGAC 2 cut(s) 189, 312
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 196
BcnI CCSGG 2 cut(s) 57, 66
BcoDI GTCTC 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 318
BglI GCCNNNNNGGC 1 cut(s) 350
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BmcAI AGTACT 1 cut(s) 270
Bme1390I CCNGG 3 cut(s) 57, 66, 196
BmeT110I CYCGRG 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 3 cut(s) 112, 200, 411
BmrFI CCNGG 3 cut(s) 57, 66, 196
BmsI GCATC 1 cut(s) 231
BpiI GAAGAC 2 cut(s) 189, 312
BpmI CTGGAG 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 191
BpuMI CCSGG 2 cut(s) 57, 66
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse118I RCCGGY 1 cut(s) 324
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 163
BseRI GAGGAG 2 cut(s) 103, 181
BseSI GKGCMC 1 cut(s) 422
BseXI GCAGC 1 cut(s) 170
BseYI CCCAGC 1 cut(s) 249
BshFI GGCC 2 cut(s) 73, 353
BsiHKAI GWGCWC 1 cut(s) 402
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 3 cut(s) 56, 66, 325
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 2 cut(s) 73, 353
Bso31I GGTCTC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 374
Bsp1286I GDGCHC 2 cut(s) 402, 422
Bsp143I GATC 4 cut(s) 46, 127, 217, 363
BspANI GGCC 2 cut(s) 73, 353
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 3 cut(s) 112, 200, 411
BspMI ACCTGC 1 cut(s) 318
BspPI GGATC 2 cut(s) 122, 358
BspTNI GGTCTC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 324
BssAI RCCGGY 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 4 cut(s) 46, 127, 217, 363
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 4 cut(s) 49, 130, 220, 366
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 4 cut(s) 46, 127, 217, 363
BstMWI GCNNNNNNNGC 3 cut(s) 336, 350, 391
BstNI CCWGG 1 cut(s) 196
BstSCI CCNGG 3 cut(s) 55, 64, 194
BstSLI GKGCMC 1 cut(s) 422
BstV1I GCAGC 1 cut(s) 170
BstV2I GAAGAC 2 cut(s) 189, 312
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
BsuRI GGCC 2 cut(s) 73, 353
BtsCI GGATG 1 cut(s) 259
BveI ACCTGC 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 355
Cfr10I RCCGGY 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 269
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviAII CATG 2 cut(s) 349, 358
CviJI RGCY 7 cut(s) 60, 73, 111, 146, 249, 324, 353
CviKI_1 RGCY 7 cut(s) 60, 73, 111, 146, 249, 324, 353
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 1 cut(s) 149
DpnI GATC 4 cut(s) 48, 129, 219, 365
DpnII GATC 4 cut(s) 46, 127, 217, 363
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 194
FaeI CATG 2 cut(s) 352, 361
FaiI YATR 4 cut(s) 108, 332, 350, 359
FatI CATG 2 cut(s) 348, 357
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
GsaI CCCAGC 1 cut(s) 253
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 2 cut(s) 73, 353
HapII CCGG 3 cut(s) 56, 66, 325
Hin1II CATG 2 cut(s) 352, 361
HinfI GANTC 1 cut(s) 32
HpaII CCGG 3 cut(s) 56, 66, 325
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 3 cut(s) 152, 297, 304
Hpy188III TCNNGA 2 cut(s) 170, 319
Hpy8I GTNNAC 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 355, 375
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 5 cut(s) 95, 158, 244, 330, 357
HpyF10VI GCNNNNNNNGC 3 cut(s) 336, 350, 391
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 2 cut(s) 352, 361
Kzo9I GATC 4 cut(s) 46, 127, 217, 363
LmnI GCTCC 1 cut(s) 116
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 231
MalI GATC 4 cut(s) 48, 129, 219, 365
MboI GATC 4 cut(s) 46, 127, 217, 363
MboII GAAGA 4 cut(s) 41, 91, 194, 317
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 2 cut(s) 402, 422
MluCI AATT 1 cut(s) 427
MnlI CCTC 7 cut(s) 62, 124, 158, 202, 212, 291, 350
MspI CCGG 3 cut(s) 56, 66, 325
MspR9I CCNGG 3 cut(s) 57, 66, 196
MvaI CCWGG 1 cut(s) 196
MwoI GCNNNNNNNGC 3 cut(s) 336, 350, 391
NciI CCSGG 2 cut(s) 57, 66
NdeII GATC 4 cut(s) 46, 127, 217, 363
NlaIII CATG 2 cut(s) 352, 361
NlaIV GGNNCC 3 cut(s) 112, 200, 411
PfeI GAWTC 1 cut(s) 32
PfoI TCCNGGA 2 cut(s) 64, 194
PkrI GCNGC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 194
PspFI CCCAGC 1 cut(s) 249
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 3 cut(s) 112, 200, 411
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 363
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 4 cut(s) 46, 127, 217, 363
Sau96I GGNCC 1 cut(s) 71
ScaI AGTACT 1 cut(s) 270
ScrFI CCNGG 3 cut(s) 57, 66, 196
SduI GDGCHC 2 cut(s) 402, 422
SetI ASST 5 cut(s) 83, 204, 251, 302, 312
SfaNI GCATC 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 427
StyD4I CCNGG 3 cut(s) 55, 64, 194
TaaI ACNGT 1 cut(s) 262
TasI AATT 1 cut(s) 427
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 1 cut(s) 32
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 91, 337
ZrmI AGTACT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.