FvH4_6g41250

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012328
Physical Location & Seq
Forward (+)
32485762 .. 32488356
2595 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41250.t2

Sequence Viewer

Length: 2007 bp
ATGGAAGTTGCAAGCCCACTAAAAGATAGTAGTCCTTTAGCATCAAGTCCTTTCTCTTCTCCAAACGTTGGAGCCTTGCTCAAGATTAAGATCATTTCATGGACTCAAGAGACTGGTTTGCCTGTTTCTGTTAGTGTTCGAGTTGGCGGTAAGACCTTTAACCTTCACAAGTACCCAATATTTTCAAAAAGTGGTTATTTCAAGAAAAGGCTGAATGAATCAGCTGAGGTTGAGCTACCACCAGACTTCCCAGGAGGGCCAGAAACCTTTGAGATGATTGCATTGTTCATCTATGGCTCCTCCACATTGATTGACCCTTTCAATGTGGTAGCCCTGAGATGTGCAGCTGAGTTTCTTGAAATGACAGAAGAATACTCTTCTGGCAACCTCTGTGAGCGCTTTGATCTGTACTTAAACCAAGTAGTCATGCAGAGTTGGAATGACACCCTAATAGTACTCCAGAAGTGCCAAACTTTGCTTCCATGGTCTGAAGACTTGTTAATCGTGAGCCGCTGCATTGAGTGCCTAGCATTCATGGCTTGTATGGAGATTCTTGATCCGGAGAGAAGGCGTGACACACCGGTACTCACATTGGACACATTGTGCATCCGAAATTGGAGCTGTGAAATGGGAAAGGAGATTATGAGTCAGGACCTTTGGATCAAAGATCTCATTGCTCTACCATTTGGATTCTTTAAGAGGATAATAGGGTCCTTGAGAAGACAAGGTATGAAAGAAAAGTATTTGACTCCCATTATTGTTTTATATGCTAACAAATGGGTACTTTCAAAAAAGACAATCCAATTTTGGGAAAACTCTGGTCACAAAATTGGGGATGATCATAAAGTTTCAGTTATCCTTCAAGGTGTTCTTGATTTGCTTCCCAAGGGGGAGAAGGCTTGTCGAGCAATCCCCGTCGGGTTTTACTTTGCAATTCTCTCTACATCCCTTGAAGAAGGTCTGAGAGGTGATAGCAAGGCAAAGTTGCAAGAGCAGATTGTATCTCAACTACACTATGCCCAACTGGAAGACTTTATCTTTCCAAAAAGTGGAACTGAGTCAATATCTTCTAGCATAGAGCTGGCTACAATGGAGAGCATAATTTCAACATATGTATCAGCTAATTTGGATAAGGATCATAGCCTTTCAGCAGGGAACTCAATTGTTGCAGAATTGTGGGATGCATATCTTACTCACATAGCTACTGATACCAACATGCAGCCTAAAAGATTCATGGAACTCGTCGAAAGATTACCTATATCCTACAGACACTGTCATGACAAACTCTACAGGGCAATGAACACCTTCTTGCAGGCACACCCAACTGTCTGCCAAGAAGAGAAGTGGGCAGTGTGCAAGTACCTTAGCTGCCAAAAACTGTCACAAGAGGCGTGCATTGATGCTGTTCAAAATGAGTTGATGCCGCTGCGTTTGATTGTTCAAGCACTTTTTGTGCAGCAGCTCAGCACACACCAAGCTTTCAAAGAATGCTCGGATTCGTTCCGATATGTACACTGTGGAGAGTTTTCTGGGAGTCTCTCAAGCTCTAGGTGCCCAAACTCTAAAAGCCAGAATCTTGGGGATAGTCCTAGTACATATACAGATGGAGCAGAGCCAGCTAGCAGCAAACCCTTGAGCTTTTTGCTACAAAAGGACCTGGTCAATCAGAGACCTGAGCTGTCAAGGAAAGAATATGAGTCAACAAGCTTCAGAATTCAGAATCTTGAACAAGAGCTCATGACACTGAAGCGAAGCCTTCAATGGCAGAGCATTTCGAAGAAACAAGAACCAGTTTCAACCACAGTACCAAGCATGAAGCCATATAATAAGGAAAGCAGATCGATGAGCAAAAAGGGCAAACCACTTGTACATGCAACGGGTTGCATTGGCTCTGTGAATTTTGCTTCTCAAAGAAGGTATGCAAGTCAACTACTGAAGGTCTTTCGCAGAATTTCCTTGTTTGGAAGCAGAAAACTAAAGAGAAAGCCAGGTTCTAGAGCAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

669

Amino Acids

75.46

Weight (kDa)

8.63

Isoelectric Point (pI)

56.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 127 - 374 1.6e-63 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48130
fragaria_vesca FvH4_6g41250 FvH4_6g41250 FvH4_6g41250
malus_domestica MD09G1121300.v1.1 MD17G1112300.v1.1
prunus_persica Prupe.3G202400_v2.0.a1
pyrus_communis pycom09g04570 pycom17g10400
rosa_chinensis RchiOBHm_Chr2g0156801
rosa_laevigata RLG00000020943
rosa_multiflora Rmu_co8389443.1_g000001
rosa_roxburghii Rroxscaffold_2G00092710
rosa_rugosa Rorug02G0456300
rosa_samantha Rh2AG521900 Rh2BG535300 Rh2CG506800 Rh2DG544300
rosa_wichuraiana Rw2G043090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1551
AccB7I CCANNNNNTGG 2 cut(s) 68, 1049
AccIII TCCGGA 1 cut(s) 559
AciI CCGC 3 cut(s) 147, 511, 1424
AclI AACGTT 1 cut(s) 66
AclWI GGATC 3 cut(s) 551, 668, 1143
AcsI RAATTY 3 cut(s) 1713, 1897, 1950
AcuI CTGAAG 4 cut(s) 510, 1693, 1766, 1955
AdeI CACNNNGTG 1 cut(s) 603
AfeI AGCGCT 1 cut(s) 398
AfiI CCNNNNNNNGG 3 cut(s) 68, 808, 1049
AgeI ACCGGT 1 cut(s) 580
AjnI CCWGG 3 cut(s) 250, 1656, 1987
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
Alw21I GWGCWC 1 cut(s) 1737
Alw26I GTCTC 3 cut(s) 104, 1541, 1663
AlwI GGATC 3 cut(s) 551, 668, 1143
AlwNI CAGNNNCTG 1 cut(s) 1272
Aor13HI TCCGGA 1 cut(s) 559
Aor51HI AGCGCT 1 cut(s) 398
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 9 cut(s) 344, 513, 1219, 1368, 1426, 1456, 1459, 1623, 2000
ApoI RAATTY 3 cut(s) 1713, 1897, 1950
AsiGI ACCGGT 1 cut(s) 580
Asp700I GAANNNNTTC 1 cut(s) 1304
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 4 cut(s) 257, 652, 711, 1654
AsuHPI GGTGA 1 cut(s) 980
AsuII TTCGAA 1 cut(s) 1775
AsuNHI GCTAGC 1 cut(s) 1619
AvaII GGWCC 3 cut(s) 652, 711, 1654
BaeGI GKGCMC 1 cut(s) 1556
BaeI ACNNNNGTAYC 4 cut(s) 1098, 1131, 1788, 1821
BanI GGYRCC 1 cut(s) 1551
BanII GRGCYC 1 cut(s) 1737
BbsI GAAGAC 3 cut(s) 498, 727, 1035
Bbv12I GWGCWC 1 cut(s) 1737
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 8 cut(s) 356, 500, 1231, 1355, 1413, 1468, 1471, 1635
BccI CCATC 1 cut(s) 1598
BciT130I CCWGG 3 cut(s) 252, 1658, 1989
BclI TGATCA 1 cut(s) 838
BcoDI GTCTC 3 cut(s) 104, 1541, 1663
BfaI CTAG 6 cut(s) 527, 1071, 1548, 1590, 1620, 1995
BfmI CTRYAG 2 cut(s) 1264, 1288
BfoI RGCGCY 1 cut(s) 400
BglII AGATCT 1 cut(s) 667
BlpI GCTNAGC 1 cut(s) 1463
BmcAI AGTACT 1 cut(s) 456
Bme1390I CCNGG 3 cut(s) 252, 1658, 1989
Bme18I GGWCC 3 cut(s) 652, 711, 1654
BmgT120I GGNCC 4 cut(s) 257, 652, 711, 1654
BmiI GGNNCC 4 cut(s) 73, 298, 712, 1553
BmrFI CCNGG 3 cut(s) 252, 1658, 1989
BmsI GCATC 5 cut(s) 50, 615, 1171, 1390, 1410
BmtI GCTAGC 1 cut(s) 1623
BpiI GAAGAC 3 cut(s) 498, 727, 1035
BplI GAGNNNNNCTC 2 cut(s) 63, 95
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 3 cut(s) 225, 1364, 1674
Bpu1102I GCTNAGC 1 cut(s) 1463
Bpu14I TTCGAA 1 cut(s) 1775
BpuEI CTTGAG 5 cut(s) 65, 90, 736, 1525, 1654
Bsa29I ATCGAT 1 cut(s) 1841
BsaBI GATNNNNATC 3 cut(s) 89, 1134, 1185
BsaI GGTCTC 1 cut(s) 1663
BsaJI CCNNGG 3 cut(s) 250, 482, 885
BsaWI WCCGGW 2 cut(s) 559, 580
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 808, 1049
Bse118I RCCGGY 1 cut(s) 580
Bse1I ACTGG 3 cut(s) 118, 1029, 1790
Bse3DI GCAATG 2 cut(s) 672, 1302
Bse8I GATNNNNATC 3 cut(s) 89, 1134, 1185
BseAI TCCGGA 1 cut(s) 559
BseBI CCWGG 3 cut(s) 252, 1658, 1989
BseCI ATCGAT 1 cut(s) 1841
BseDI CCNNGG 3 cut(s) 250, 482, 885
BseGI GGATG 4 cut(s) 606, 841, 944, 1186
BseJI GATNNNNATC 3 cut(s) 89, 1134, 1185
BseLI CCNNNNNNNGG 3 cut(s) 68, 808, 1049
BseMI GCAATG 2 cut(s) 672, 1302
BseMII CTCAG 7 cut(s) 216, 326, 339, 953, 1047, 1477, 1665
BseNI ACTGG 3 cut(s) 118, 1029, 1790
BseRI GAGGAG 1 cut(s) 289
BseSI GKGCMC 1 cut(s) 1556
BseXI GCAGC 8 cut(s) 356, 500, 1231, 1355, 1413, 1468, 1471, 1635
BsgI GTGCAG 2 cut(s) 363, 1475
BshFI GGCC 1 cut(s) 259
BshNI GGYRCC 1 cut(s) 1551
BshTI ACCGGT 1 cut(s) 580
BshVI ATCGAT 1 cut(s) 1841
BsiHKAI GWGCWC 1 cut(s) 1737
BsiSI CCGG 2 cut(s) 560, 581
BslI CCNNNNNNNGG 3 cut(s) 68, 808, 1049
BsmAI GTCTC 3 cut(s) 104, 1541, 1663
BsmI GAATGC 2 cut(s) 530, 1493
BsnI GGCC 1 cut(s) 259
Bso31I GGTCTC 1 cut(s) 1663
Bsp119I TTCGAA 1 cut(s) 1775
Bsp1286I GDGCHC 2 cut(s) 1556, 1737
Bsp13I TCCGGA 1 cut(s) 559
Bsp1407I TGTACA 2 cut(s) 1510, 1867
Bsp143I GATC 8 cut(s) 90, 403, 556, 660, 667, 838, 1135, 1838
Bsp1720I GCTNAGC 1 cut(s) 1463
Bsp19I CCATGG 1 cut(s) 482
BspACI CCGC 3 cut(s) 147, 511, 1424
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 7 cut(s) 217, 327, 340, 954, 1048, 1476, 1666
BspDI ATCGAT 1 cut(s) 1841
BspEI TCCGGA 1 cut(s) 559
BspHI TCATGA 2 cut(s) 1276, 1737
BspLI GGNNCC 4 cut(s) 73, 298, 712, 1553
BspOI GCTAGC 1 cut(s) 1623
BspPI GGATC 3 cut(s) 551, 668, 1143
BspT104I TTCGAA 1 cut(s) 1775
BspT107I GGYRCC 1 cut(s) 1551
BspTNI GGTCTC 1 cut(s) 1663
BsrDI GCAATG 2 cut(s) 672, 1302
BsrFI RCCGGY 1 cut(s) 580
BsrGI TGTACA 2 cut(s) 1510, 1867
BsrI ACTGG 3 cut(s) 118, 1029, 1790
BssAI RCCGGY 1 cut(s) 580
BssECI CCNNGG 3 cut(s) 250, 482, 885
BssMI GATC 8 cut(s) 90, 403, 556, 660, 667, 838, 1135, 1838
BssT1I CCWWGG 2 cut(s) 482, 885
Bst2UI CCWGG 3 cut(s) 252, 1658, 1989
Bst4CI ACNGT 5 cut(s) 1274, 1327, 1380, 1517, 1804
Bst6I CTCTTC 3 cut(s) 61, 382, 1332
BstAPI GCANNNNNTGC 1 cut(s) 522
BstAUI TGTACA 2 cut(s) 1510, 1867
BstBI TTCGAA 1 cut(s) 1775
BstC8I GCNNGC 6 cut(s) 13, 1083, 1314, 1393, 1617, 1621
BstDEI CTNAG 8 cut(s) 225, 335, 348, 962, 1056, 1364, 1463, 1674
BstDSI CCRYGG 1 cut(s) 482
BstF5I GGATG 4 cut(s) 606, 841, 944, 1186
BstH2I RGCGCY 1 cut(s) 400
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 8 cut(s) 93, 406, 559, 663, 670, 841, 1138, 1841
BstMAI GTCTC 3 cut(s) 104, 1541, 1663
BstMBI GATC 8 cut(s) 90, 403, 556, 660, 667, 838, 1135, 1838
BstMWI GCNNNNNNNGC 6 cut(s) 522, 536, 905, 1551, 1616, 1854
BstNI CCWGG 3 cut(s) 252, 1658, 1989
BstNSI RCATGY 2 cut(s) 1219, 1874
BstSCI CCNGG 3 cut(s) 250, 1656, 1987
BstSFI CTRYAG 2 cut(s) 1264, 1288
BstSLI GKGCMC 1 cut(s) 1556
BstV1I GCAGC 8 cut(s) 356, 500, 1231, 1355, 1413, 1468, 1471, 1635
BstV2I GAAGAC 3 cut(s) 498, 727, 1035
BstX2I RGATCY 1 cut(s) 667
BstXI CCANNNNNNTGG 1 cut(s) 1577
BstYI RGATCY 1 cut(s) 667
Bsu15I ATCGAT 1 cut(s) 1841
BsuRI GGCC 1 cut(s) 259
BsuTUI ATCGAT 1 cut(s) 1841
BtgI CCRYGG 1 cut(s) 482
BtsCI GGATG 4 cut(s) 606, 841, 944, 1186
BtsI GCAGTG 1 cut(s) 1356
BtsIMutI CAGTG 4 cut(s) 1270, 1356, 1513, 1742
Cac8I GCNNGC 6 cut(s) 13, 1083, 1314, 1393, 1617, 1621
CaiI CAGNNNCTG 1 cut(s) 1272
CciI TCATGA 2 cut(s) 1276, 1737
CfoI GCGC 1 cut(s) 399
Cfr10I RCCGGY 1 cut(s) 580
Cfr13I GGNCC 4 cut(s) 257, 652, 711, 1654
ClaI ATCGAT 1 cut(s) 1841
CsiI ACCWGGT 1 cut(s) 1656
CspAI ACCGGT 1 cut(s) 580
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
DdeI CTNAG 8 cut(s) 225, 335, 348, 962, 1056, 1364, 1463, 1674
DpnI GATC 8 cut(s) 92, 405, 558, 662, 669, 840, 1137, 1840
DpnII GATC 8 cut(s) 90, 403, 556, 660, 667, 838, 1135, 1838
DraIII CACNNNGTG 1 cut(s) 603
Eam1104I CTCTTC 3 cut(s) 61, 382, 1332
EarI CTCTTC 3 cut(s) 61, 382, 1332
Ecl136II GAGCTC 1 cut(s) 1735
Eco130I CCWWGG 2 cut(s) 482, 885
Eco24I GRGCYC 1 cut(s) 1737
Eco31I GGTCTC 1 cut(s) 1663
Eco47I GGWCC 3 cut(s) 652, 711, 1654
Eco47III AGCGCT 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 1735
Eco57I CTGAAG 4 cut(s) 510, 1693, 1766, 1955
EcoICRI GAGCTC 1 cut(s) 1735
EcoO109I RGGNCCY 3 cut(s) 652, 711, 1654
EcoRI GAATTC 1 cut(s) 1713
EcoRII CCWGG 3 cut(s) 250, 1656, 1987
EcoT14I CCWWGG 2 cut(s) 482, 885
EcoT22I ATGCAT 1 cut(s) 1186
EcoT38I GRGCYC 1 cut(s) 1737
ErhI CCWWGG 2 cut(s) 482, 885
FalI AAGNNNNNCTT 2 cut(s) 855, 887
FauNDI CATATG 1 cut(s) 1111
FbaI TGATCA 1 cut(s) 838
FokI GGATG 4 cut(s) 593, 848, 931, 1193
FriOI GRGCYC 1 cut(s) 1737
FspBI CTAG 6 cut(s) 527, 1071, 1548, 1590, 1620, 1995
GlaI GCGC 1 cut(s) 398
GsuI CTGGAG 1 cut(s) 443
HaeII RGCGCY 1 cut(s) 400
HaeIII GGCC 1 cut(s) 259
HapII CCGG 2 cut(s) 560, 581
HhaI GCGC 1 cut(s) 399
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HincII GTYRAC 2 cut(s) 1701, 1928
HindII GTYRAC 2 cut(s) 1701, 1928
HindIII AAGCTT 2 cut(s) 1476, 1705
HpaII CCGG 2 cut(s) 560, 581
HphI GGTGA 1 cut(s) 980
Hpy166II GTNNAC 3 cut(s) 1513, 1701, 1928
Hpy188I TCNGA 8 cut(s) 490, 611, 963, 1495, 1505, 1668, 1712, 1719
Hpy8I GTNNAC 3 cut(s) 1513, 1701, 1928
Hpy99I CGWCG 2 cut(s) 920, 1247
HpyAV CCTTC 9 cut(s) 173, 561, 869, 889, 950, 1315, 1766, 1908, 1930
HpyCH4III ACNGT 5 cut(s) 1274, 1327, 1380, 1517, 1804
HpyCH4IV ACGT 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 6 cut(s) 522, 536, 905, 1551, 1616, 1854
HpyF3I CTNAG 8 cut(s) 225, 335, 348, 962, 1056, 1364, 1463, 1674
HpySE526I ACGT 1 cut(s) 66
HspAI GCGC 1 cut(s) 397
Kpn2I TCCGGA 1 cut(s) 559
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 8 cut(s) 90, 403, 556, 660, 667, 838, 1135, 1838
LmnI GCTCC 4 cut(s) 71, 302, 618, 1607
Lsp1109I GCAGC 8 cut(s) 356, 500, 1231, 1355, 1413, 1468, 1471, 1635
LweI GCATC 5 cut(s) 50, 615, 1171, 1390, 1410
MabI ACCWGGT 1 cut(s) 1656
MaeI CTAG 6 cut(s) 527, 1071, 1548, 1590, 1620, 1995
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 3 cut(s) 572, 821, 1380
MalI GATC 8 cut(s) 92, 405, 558, 662, 669, 840, 1137, 1840
MboI GATC 8 cut(s) 90, 403, 556, 660, 667, 838, 1135, 1838
MfeI CAATTG 1 cut(s) 1161
MflI RGATCY 1 cut(s) 667
MhlI GDGCHC 2 cut(s) 1556, 1737
MlyI GAGTC 6 cut(s) 97, 655, 742, 1067, 1543, 1706
MmeI TCCRAC 2 cut(s) 49, 416
MnlI CCTC 7 cut(s) 220, 248, 310, 398, 693, 959, 1381
Mph1103I ATGCAT 1 cut(s) 1186
MroI TCCGGA 1 cut(s) 559
MroXI GAANNNNTTC 1 cut(s) 1304
MseI TTAA 5 cut(s) 87, 159, 413, 500, 696
MslI CAYNNNNRTG 1 cut(s) 1275
MspA1I CMGCKG 4 cut(s) 224, 347, 513, 1426
MspI CCGG 2 cut(s) 560, 581
MspR9I CCNGG 3 cut(s) 252, 1658, 1989
MunI CAATTG 1 cut(s) 1161
Mva1269I GAATGC 2 cut(s) 530, 1493
MvaI CCWGG 3 cut(s) 252, 1658, 1989
MwoI GCNNNNNNNGC 6 cut(s) 522, 536, 905, 1551, 1616, 1854
NcoI CCATGG 1 cut(s) 482
NdeI CATATG 1 cut(s) 1111
NdeII GATC 8 cut(s) 90, 403, 556, 660, 667, 838, 1135, 1838
NheI GCTAGC 1 cut(s) 1619
NlaIV GGNNCC 4 cut(s) 73, 298, 712, 1553
NmuCI GTSAC 3 cut(s) 572, 821, 1380
NsiI ATGCAT 1 cut(s) 1186
NspI RCATGY 2 cut(s) 1219, 1874
NspV TTCGAA 1 cut(s) 1775
PagI TCATGA 2 cut(s) 1276, 1737
PctI GAATGC 2 cut(s) 530, 1493
PdmI GAANNNNTTC 1 cut(s) 1304
PfeI GAWTC 7 cut(s) 218, 550, 690, 1230, 1496, 1573, 1720
PflFI GACNNNGTC 2 cut(s) 1272, 1658
PflMI CCANNNNNTGG 2 cut(s) 68, 1049
PinAI ACCGGT 1 cut(s) 580
PleI GAGTC 6 cut(s) 97, 654, 742, 1066, 1542, 1705
PpsI GAGTC 6 cut(s) 97, 654, 742, 1066, 1542, 1705
PpuMI RGGWCCY 3 cut(s) 652, 711, 1654
Psp124BI GAGCTC 1 cut(s) 1737
Psp1406I AACGTT 1 cut(s) 66
Psp5II RGGWCCY 3 cut(s) 652, 711, 1654
Psp6I CCWGG 3 cut(s) 250, 1656, 1987
PspGI CCWGG 3 cut(s) 250, 1656, 1987
PspN4I GGNNCC 4 cut(s) 73, 298, 712, 1553
PspPI GGNCC 4 cut(s) 257, 652, 711, 1654
PspPPI RGGWCCY 3 cut(s) 652, 711, 1654
PstNI CAGNNNCTG 1 cut(s) 1272
PsuI RGATCY 1 cut(s) 667
PsyI GACNNNGTC 2 cut(s) 1272, 1658
PvuII CAGCTG 2 cut(s) 224, 347
RseI CAYNNNNRTG 1 cut(s) 1275
SacI GAGCTC 1 cut(s) 1737
SaqAI TTAA 5 cut(s) 87, 159, 413, 500, 696
Sau3AI GATC 8 cut(s) 90, 403, 556, 660, 667, 838, 1135, 1838
Sau96I GGNCC 4 cut(s) 257, 652, 711, 1654
ScaI AGTACT 1 cut(s) 456
SchI GAGTC 6 cut(s) 97, 655, 742, 1067, 1543, 1706
ScrFI CCNGG 3 cut(s) 252, 1658, 1989
SduI GDGCHC 2 cut(s) 1556, 1737
SexAI ACCWGGT 1 cut(s) 1656
SfaNI GCATC 5 cut(s) 50, 615, 1171, 1390, 1410
SfcI CTRYAG 2 cut(s) 1264, 1288
SfuI TTCGAA 1 cut(s) 1775
SinI GGWCC 3 cut(s) 652, 711, 1654
SmiMI CAYNNNNRTG 1 cut(s) 1275
SmlI CTYRAG 5 cut(s) 80, 105, 715, 1540, 1633
SmoI CTYRAG 5 cut(s) 80, 105, 715, 1540, 1633
SsiI CCGC 3 cut(s) 147, 511, 1424
SspI AATATT 1 cut(s) 180
SspMI CTAG 6 cut(s) 527, 1071, 1548, 1590, 1620, 1995
SstI GAGCTC 1 cut(s) 1737
StyD4I CCNGG 3 cut(s) 250, 1656, 1987
StyI CCWWGG 2 cut(s) 482, 885
TaaI ACNGT 5 cut(s) 1274, 1327, 1380, 1517, 1804
TaiI ACGT 1 cut(s) 69
TaqI TCGA 5 cut(s) 139, 904, 1245, 1775, 1841
TatI WGTACW 5 cut(s) 408, 454, 1510, 1592, 1867
TauI GCSGC 2 cut(s) 513, 1426
TfiI GAWTC 7 cut(s) 218, 550, 690, 1230, 1496, 1573, 1720
Tru1I TTAA 5 cut(s) 87, 159, 413, 500, 696
Tru9I TTAA 5 cut(s) 87, 159, 413, 500, 696
TscAI CASTG 4 cut(s) 1277, 1356, 1520, 1749
TseFI GTSAC 3 cut(s) 572, 821, 1380
TseI GCWGC 9 cut(s) 344, 513, 1219, 1368, 1426, 1456, 1459, 1623, 2000
Tsp45I GTSAC 3 cut(s) 572, 821, 1380
TspDTI ATGAA 8 cut(s) 87, 231, 277, 523, 746, 1222, 1313, 1829
TspRI CASTG 4 cut(s) 1277, 1356, 1520, 1749
Tth111I GACNNNGTC 2 cut(s) 1272, 1658
Van91I CCANNNNNTGG 2 cut(s) 68, 1049
VpaK11BI GGWCC 3 cut(s) 652, 711, 1654
XapI RAATTY 3 cut(s) 1713, 1897, 1950
XbaI TCTAGA 1 cut(s) 1994
XceI RCATGY 2 cut(s) 1219, 1874
XmnI GAANNNNTTC 1 cut(s) 1304
XspI CTAG 6 cut(s) 527, 1071, 1548, 1590, 1620, 1995
ZrmI AGTACT 1 cut(s) 456
Zsp2I ATGCAT 1 cut(s) 1186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.