Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013387

Physical Location & Seq

Genomic Coordinates Forward (+)

19819948 .. 19821007

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAAGATCATTACCATCAAGTAGAAGTGGAGGGAGAAGAAGAGATCAAGCCAAGCAAAGAAGCCAACAAGACAGACGAAAACACATCATCATTAAGAATATTCCCCTGCCTCTTTTGTTCTAGAAAGTTCCATAGCTCCCAAGCCCTAGGAGGCCACCAGAACGCCCACAAGAAGGAGCGAACCGCTGCTAGAAGAGCCAAAAGGGCTTATGATTTTGTCAACAACAATGACTTCCTTCACACGTTACCTGTTTTCTTATCCTCTCCCTCTCAACATCACTTGACCATCTTAGGCTACCCTGCTTCTGCCTCCGTTGCCTGTTTTCCGACGGTTCATCCCGACCATCCGATTTTCAAATCCAGTGGTTCTCATGTCGTGTTGGCTACATCCCACCAAGGTAGAGATTGCAAAGGAGGGTACTGTTGTCAACAACGTGTAGACATTTTGGATCATCATTATAACGTGGTCAATAGTGACAAGGGTAAAGATCAGTGTCTTGATCTCTCCCTACATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.45

Weight (kDa)

6.94

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48890 AT5G48890
fragaria_vesca	FvH4_2g19520
malus_domestica	MD05G1179400.v1.1 MD10G1169000.v1.1
prunus_persica	Prupe.8G206700_v2.0.a1
pyrus_communis	pycom10g14570
rosa_chinensis	RchiOBHm_Chr6g0285241
rosa_laevigata	RLG00000012658
rosa_multiflora	Rmu_co8289007.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183390
rosa_rugosa	Rorug06G0173400
rosa_samantha	Rh6AG283900 Rh6BG284700 Rh6CG286300 Rh6DG279300
rosa_wichuraiana	Rw0G022070 Rw6G024430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AccI	GTMKAC	1 cut(s)	441
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	1 cut(s)	459
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	175
AflIII	ACRYGT	2 cut(s)	243, 436
AgsI	TTSAA	1 cut(s)	358
AluBI	AGCT	1 cut(s)	138
AluI	AGCT	1 cut(s)	138
AlwI	GGATC	1 cut(s)	459
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	188
AspA2I	CCTAGG	1 cut(s)	148
AvrII	CCTAGG	1 cut(s)	148
BaeI	ACNNNNGTAYC	2 cut(s)	412, 445
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	3 cut(s)	24, 296, 354
BfaI	CTAG	3 cut(s)	123, 149, 192
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	189
BlnI	CCTAGG	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	148, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	148, 397
BseGI	GGATG	3 cut(s)	337, 346, 389
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	175
BshFI	GGCC	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	175
BsnI	GGCC	1 cut(s)	156
Bsp143I	GATC	5 cut(s)	7, 45, 451, 490, 502
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	459
BspQI	GCTCTTC	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	363
BssECI	CCNNGG	2 cut(s)	148, 397
BssMI	GATC	5 cut(s)	7, 45, 451, 490, 502
BssT1I	CCWWGG	2 cut(s)	148, 397
Bst4CI	ACNGT	2 cut(s)	334, 425
Bst6I	CTCTTC	2 cut(s)	36, 190
BstDEI	CTNAG	1 cut(s)	292
BstF5I	GGATG	3 cut(s)	337, 346, 389
BstKTI	GATC	5 cut(s)	10, 48, 454, 493, 505
BstMBI	GATC	5 cut(s)	7, 45, 451, 490, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 206, 317
BstV1I	GCAGC	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	3 cut(s)	337, 346, 389
BtsIMutI	CAGTG	2 cut(s)	370, 500
Csp6I	GTAC	1 cut(s)	421
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	9 cut(s)	52, 65, 138, 146, 156, 200, 209, 297, 386
CviKI_1	RGCY	9 cut(s)	52, 65, 138, 146, 156, 200, 209, 297, 386
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	5 cut(s)	9, 47, 453, 492, 504
DpnII	GATC	5 cut(s)	7, 45, 451, 490, 502
Eam1104I	CTCTTC	2 cut(s)	36, 190
EarI	CTCTTC	2 cut(s)	36, 190
Eco130I	CCWWGG	2 cut(s)	148, 397
EcoT14I	CCWWGG	2 cut(s)	148, 397
ErhI	CCWWGG	2 cut(s)	148, 397
FaeI	CATG	1 cut(s)	377
FaiI	YATR	4 cut(s)	135, 213, 375, 462
FatI	CATG	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	3 cut(s)	324, 333, 376
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	3 cut(s)	123, 149, 192
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	377
HincII	GTYRAC	2 cut(s)	223, 431
HindII	GTYRAC	2 cut(s)	223, 431
Hpy166II	GTNNAC	3 cut(s)	223, 431, 442
Hpy188I	TCNGA	2 cut(s)	330, 351
Hpy188III	TCNNGA	3 cut(s)	123, 341, 500
Hpy8I	GTNNAC	3 cut(s)	223, 431, 442
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	169, 248
HpyCH4III	ACNGT	2 cut(s)	334, 425
HpyCH4IV	ACGT	3 cut(s)	245, 436, 465
HpyCH4V	TGCA	1 cut(s)	411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 206, 317
HpyF3I	CTNAG	1 cut(s)	292
HpySE526I	ACGT	3 cut(s)	245, 436, 465
Hsp92II	CATG	1 cut(s)	377
Kzo9I	GATC	5 cut(s)	7, 45, 451, 490, 502
LguI	GCTCTTC	1 cut(s)	190
LmnI	GCTCC	2 cut(s)	143, 178
LpnPI	CCDG	6 cut(s)	121, 173, 264, 315, 334, 376
Lsp1109I	GCAGC	1 cut(s)	175
MaeI	CTAG	3 cut(s)	123, 149, 192
MaeII	ACGT	3 cut(s)	245, 436, 465
MaeIII	GTNAC	2 cut(s)	246, 476
MalI	GATC	5 cut(s)	9, 47, 453, 492, 504
MboI	GATC	5 cut(s)	7, 45, 451, 490, 502
MboII	GAAGA	4 cut(s)	17, 50, 53, 207
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	7 cut(s)	25, 122, 146, 274, 280, 322, 410
MseI	TTAA	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	197, 206, 317
NdeII	GATC	5 cut(s)	7, 45, 451, 490, 502
NlaIII	CATG	1 cut(s)	377
NmuCI	GTSAC	1 cut(s)	476
PciSI	GCTCTTC	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	190
PsiI	TTATAA	1 cut(s)	462
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SapI	GCTCTTC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	5 cut(s)	7, 45, 451, 490, 502
SetI	ASST	6 cut(s)	140, 248, 253, 403, 439, 468
SsiI	CCGC	1 cut(s)	186
SspI	AATATT	1 cut(s)	102
SspMI	CTAG	3 cut(s)	123, 149, 192
StyI	CCWWGG	2 cut(s)	148, 397
TaaI	ACNGT	2 cut(s)	334, 425
TaiI	ACGT	3 cut(s)	248, 439, 468
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	2 cut(s)	370, 500
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	1 cut(s)	326
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	2 cut(s)	370, 500
XbaI	TCTAGA	1 cut(s)	122
XmaJI	CCTAGG	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	3 cut(s)	123, 149, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.