Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013387

Physical Location & Seq

Genomic Coordinates Forward (+)

25562508 .. 25563427

Gene Structure 920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0173400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAACAAGCACCACCTCCAACATTTCCTCGTGCTGATGCAATTCAGAGGATCACTCTCCTAGAGGATGTTTACATAAAAAAGTTTTTCAAGAAGCATCCAGATTCCAAACATGAAGACGCAATCAATTTTTTTGCTTTTGATCCTGCTCCAGCCTGTATATTTGGTCATCGGGTGCTTGAGTTGAAGGAGCAGGGGGTTTCTGAACAGGAAGCAATGGCGGTAGCTGATATGGAATACCGGGCAGAGATAAAGGCAAAGAAGAAGGCATATGTTGCGTTGAAGAAAATTGCACGTCAACAAGGAAAGAGGCCTCCTCCCAACCCATATCCTAGTTTTGTCAAGGAGATACAAGCTGTGGTGACCCGAGAGGGGAGTCCCACAGCGCCGCGATTCCGAGCCAATGAGAAACCGACATGTCACGAATGGCATCCCGATAACTCATTAACCCGAAAACGCAAGGCCTTTTGGGTTTGGACTGTTGGTTCACAAAACACTTTCTTGGACAAATCATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.8

Weight (kDa)

9.52

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48890 AT5G48890
fragaria_vesca	FvH4_2g19520
malus_domestica	MD05G1179400.v1.1 MD10G1169000.v1.1
prunus_persica	Prupe.8G206700_v2.0.a1
pyrus_communis	pycom10g14570
rosa_chinensis	RchiOBHm_Chr6g0285241
rosa_laevigata	RLG00000012658
rosa_multiflora	Rmu_co8289007.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183390
rosa_rugosa	Rorug06G0173400
rosa_samantha	Rh6AG283900 Rh6BG284700 Rh6CG286300 Rh6DG279300
rosa_wichuraiana	Rw0G022070 Rw6G024430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	391
AciI	CCGC	2 cut(s)	221, 389
AclWI	GGATC	2 cut(s)	59, 137
AfiI	CCNNNNNNNGG	1 cut(s)	372
AflIII	ACRYGT	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	91, 187, 283
AjiI	CACGTC	1 cut(s)	296
AloI	GAACNNNNNNTCC	2 cut(s)	469, 501
AluBI	AGCT	2 cut(s)	227, 356
AluI	AGCT	2 cut(s)	227, 356
AlwI	GGATC	2 cut(s)	59, 137
Ama87I	CYCGRG	1 cut(s)	366
AoxI	GGCC	2 cut(s)	311, 462
AspLEI	GCGC	1 cut(s)	388
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	373
AvaI	CYCGRG	1 cut(s)	366
BauI	CACGAG	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	123
BcnI	CCSGG	1 cut(s)	242
BfaI	CTAG	3 cut(s)	62, 333, 517
BfoI	RGCGCY	1 cut(s)	389
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	366
BmgBI	CACGTC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	3 cut(s)	28, 106, 439
BpiI	GAAGAC	1 cut(s)	123
BplI	GAGNNNNNCTC	4 cut(s)	40, 72, 301, 333
BpmI	CTGGAG	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse3DI	GCAATG	1 cut(s)	222
BseGI	GGATG	3 cut(s)	73, 97, 430
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseMI	GCAATG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	391
BshFI	GGCC	2 cut(s)	313, 464
BsiHKCI	CYCGRG	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	363
BsnI	GGCC	2 cut(s)	313, 464
BsoBI	CYCGRG	1 cut(s)	366
Bsp143I	GATC	2 cut(s)	51, 142
BspACI	CCGC	2 cut(s)	221, 389
BspANI	GGCC	2 cut(s)	313, 464
BspFNI	CGCG	1 cut(s)	391
BspPI	GGATC	2 cut(s)	59, 137
BsrDI	GCAATG	1 cut(s)	222
BssMI	GATC	2 cut(s)	51, 142
BssSI	CACGAG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	481
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstEII	GGTNACC	1 cut(s)	361
BstF5I	GGATG	3 cut(s)	73, 97, 430
BstFNI	CGCG	1 cut(s)	391
BstH2I	RGCGCY	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	2 cut(s)	54, 145
BstMBI	GATC	2 cut(s)	51, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	420
BstPI	GGTNACC	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	313, 464
BtrI	CACGTC	1 cut(s)	296
BtsCI	GGATG	3 cut(s)	73, 97, 430
CfoI	GCGC	1 cut(s)	388
CseI	GACGC	1 cut(s)	128
CviAII	CATG	2 cut(s)	113, 417
CviJI	RGCY	6 cut(s)	155, 227, 313, 356, 401, 464
CviKI_1	RGCY	6 cut(s)	155, 227, 313, 356, 401, 464
DpnI	GATC	2 cut(s)	53, 144
DpnII	GATC	2 cut(s)	51, 142
Eco147I	AGGCCT	2 cut(s)	313, 464
Eco88I	CYCGRG	1 cut(s)	366
Eco91I	GGTNACC	1 cut(s)	361
EcoO65I	GGTNACC	1 cut(s)	361
FaeI	CATG	2 cut(s)	116, 420
FaiI	YATR	8 cut(s)	77, 114, 161, 233, 271, 273, 328, 418
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	2 cut(s)	112, 416
FauNDI	CATATG	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	3 cut(s)	80, 84, 417
Fsp4HI	GCNGC	1 cut(s)	389
FspBI	CTAG	3 cut(s)	62, 333, 517
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	389
HaeIII	GGCC	2 cut(s)	313, 464
HapII	CCGG	1 cut(s)	241
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	2 cut(s)	116, 420
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HinfI	GANTC	3 cut(s)	104, 376, 393
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	3 cut(s)	73, 299, 488
Hpy188I	TCNGA	3 cut(s)	48, 205, 398
Hpy188III	TCNNGA	4 cut(s)	91, 101, 422, 434
Hpy8I	GTNNAC	3 cut(s)	73, 299, 488
HpyAV	CCTTC	2 cut(s)	181, 259
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	41, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	2 cut(s)	116, 420
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	2 cut(s)	51, 142
LmnI	GCTCC	2 cut(s)	154, 190
LpnPI	CCDG	7 cut(s)	114, 159, 165, 169, 179, 194, 254
LweI	GCATC	3 cut(s)	28, 106, 439
MaeI	CTAG	3 cut(s)	62, 333, 517
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	2 cut(s)	361, 419
MalI	GATC	2 cut(s)	53, 144
MboI	GATC	2 cut(s)	51, 142
MboII	GAAGA	3 cut(s)	128, 274, 295
MluCI	AATT	3 cut(s)	42, 127, 288
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	8 cut(s)	27, 39, 42, 58, 303, 324, 327, 364
MseI	TTAA	1 cut(s)	446
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	1 cut(s)	242
MvnI	CGCG	1 cut(s)	391
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	242
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	2 cut(s)	51, 142
NlaIII	CATG	2 cut(s)	116, 420
NmuCI	GTSAC	2 cut(s)	361, 419
NspI	RCATGY	1 cut(s)	420
PceI	AGGCCT	2 cut(s)	313, 464
PciI	ACATGT	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	104, 393
PkrI	GCNGC	1 cut(s)	390
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PscI	ACATGT	1 cut(s)	416
PspEI	GGTNACC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	2 cut(s)	51, 142
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	4 cut(s)	19, 229, 298, 358
SfaNI	GCATC	3 cut(s)	28, 106, 439
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	3 cut(s)	42, 127, 288
SseBI	AGGCCT	2 cut(s)	313, 464
SsiI	CCGC	2 cut(s)	221, 389
SspMI	CTAG	3 cut(s)	62, 333, 517
StuI	AGGCCT	2 cut(s)	313, 464
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	1 cut(s)	298
TasI	AATT	3 cut(s)	42, 127, 288
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	2 cut(s)	104, 393
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TseFI	GTSAC	2 cut(s)	361, 419
Tsp45I	GTSAC	2 cut(s)	361, 419
TspDTI	ATGAA	1 cut(s)	129
XceI	RCATGY	1 cut(s)	420
XspI	CTAG	3 cut(s)	62, 333, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.