Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013387

Physical Location & Seq

Genomic Coordinates Forward (+)

26110895 .. 26111515

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1169000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGAGACGAAGAGAAAGGCGTCACGGAAGTTGATCACCAAGAGAGCAATGCAGAAGAAGATAGAGACGCAAACGCAAGATTGTTTCCGTGCCTCTTCTGTTCGAGAAAATTTTACAGTTCTCAAGCCTTGGGAGGCCACCAAAACGCTCACAAGAAGGAAAGAACGGCTGCTAGGAAAGCTAAACGCGCTTCTAACCACGCTTTGTCTATGAACTTCCCTATACTATCCCCTAACACACAACCTCACATGGTTTTTGCTCCAAACCATCATTTAGGCCTCTTGCATCCCTATATAACTGCTCATGCAGCCAATCTCCGATACTTTCCAAATCCTAACCAGTTCTCATCAGACTGTTCCGGATCCAACGGAGCACCAAAGTTTGAAAATTCTATGTACCATGGCGGGAATGGCCTGTCGTCGAGCAATAACGTGAACGGTTATCAGTGTGAGGAGGATGAGCAAAGTTTCTTGAATTGGCAGAGGAGCGTAAGATACAATGGATTCAGTGGAGGAGGTTCATCACAGCAGTCATCAAAGGCGAATGGGGATCACAATTCCGGGATTGGTGGTGGTAGTAAGGGTAAAGAGCAAAAGCTTGATCTTTCTCTCCATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.54

Weight (kDa)

7.2

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48890 AT5G48890
fragaria_vesca	FvH4_2g19520
malus_domestica	MD05G1179400.v1.1 MD10G1169000.v1.1
prunus_persica	Prupe.8G206700_v2.0.a1
pyrus_communis	pycom10g14570
rosa_chinensis	RchiOBHm_Chr6g0285241
rosa_laevigata	RLG00000012658
rosa_multiflora	Rmu_co8289007.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183390
rosa_rugosa	Rorug06G0173400
rosa_samantha	Rh6AG283900 Rh6BG284700 Rh6CG286300 Rh6DG279300
rosa_wichuraiana	Rw0G022070 Rw6G024430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	359
AciI	CCGC	1 cut(s)	405
AclWI	GGATC	3 cut(s)	357, 370, 558
AcsI	RAATTY	2 cut(s)	110, 388
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	398
AgsI	TTSAA	2 cut(s)	386, 475
AluBI	AGCT	2 cut(s)	182, 598
AluI	AGCT	2 cut(s)	182, 598
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	3 cut(s)	357, 370, 558
Aor13HI	TCCGGA	1 cut(s)	359
AoxI	GGCC	3 cut(s)	136, 277, 412
ApeKI	GCWGC	2 cut(s)	170, 308
ApoI	RAATTY	2 cut(s)	110, 388
AspLEI	GCGC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	562
AsuHPI	GGTGA	1 cut(s)	29
BamHI	GGATCC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	157, 320
BccI	CCATC	1 cut(s)	276
BceAI	ACGGC	1 cut(s)	183
BclI	TGATCA	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	174
BisI	GCNGC	2 cut(s)	171, 309
BlsI	GCNGC	2 cut(s)	172, 310
Bme1390I	CCNGG	1 cut(s)	562
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	1 cut(s)	562
BmsI	GCATC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	562
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	129, 400
BsaWI	WCCGGW	1 cut(s)	359
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	359
BseDI	CCNNGG	2 cut(s)	129, 400
BseGI	GGATG	2 cut(s)	286, 463
BseMI	GCAATG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	3 cut(s)	467, 499, 528
BseXI	GCAGC	2 cut(s)	157, 320
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	3 cut(s)	138, 279, 414
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	2 cut(s)	360, 561
BsmAI	GTCTC	1 cut(s)	60
BsmBI	CGTCTC	1 cut(s)	60
BsnI	GGCC	3 cut(s)	138, 279, 414
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp13I	TCCGGA	1 cut(s)	359
Bsp143I	GATC	4 cut(s)	34, 362, 550, 601
Bsp19I	CCATGG	1 cut(s)	400
BspACI	CCGC	1 cut(s)	405
BspANI	GGCC	3 cut(s)	138, 279, 414
BspEI	TCCGGA	1 cut(s)	359
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	3 cut(s)	357, 370, 558
BsrDI	GCAATG	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	129, 400
BssMI	GATC	4 cut(s)	34, 362, 550, 601
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	2 cut(s)	129, 400
Bst4CI	ACNGT	3 cut(s)	119, 356, 440
Bst6I	CTCTTC	2 cut(s)	6, 101
BstACI	GRCGYC	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	400
BstF5I	GGATG	2 cut(s)	286, 463
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	4 cut(s)	37, 365, 553, 604
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	4 cut(s)	34, 362, 550, 601
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 188, 308, 411
BstSCI	CCNGG	1 cut(s)	560
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	157, 320
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BsuRI	GGCC	3 cut(s)	138, 279, 414
BtgI	CCRYGG	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	286, 463
BtsIMutI	CAGTG	2 cut(s)	452, 514
CfoI	GCGC	1 cut(s)	191
CseI	GACGC	2 cut(s)	10, 77
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	3 cut(s)	250, 305, 401
CviJI	RGCY	8 cut(s)	128, 138, 170, 182, 279, 311, 414, 598
CviKI_1	RGCY	8 cut(s)	128, 138, 170, 182, 279, 311, 414, 598
CviQI	GTAC	1 cut(s)	397
DpnI	GATC	4 cut(s)	36, 364, 552, 603
DpnII	GATC	4 cut(s)	34, 362, 550, 601
Eam1104I	CTCTTC	2 cut(s)	6, 101
EarI	CTCTTC	2 cut(s)	6, 101
Eco130I	CCWWGG	2 cut(s)	129, 400
Eco147I	AGGCCT	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	129, 400
ErhI	CCWWGG	2 cut(s)	129, 400
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	3 cut(s)	253, 308, 404
FaiI	YATR	8 cut(s)	212, 224, 251, 294, 296, 306, 395, 402
FatI	CATG	3 cut(s)	249, 304, 400
FauI	CCCGC	1 cut(s)	398
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	171, 309
FokI	GGATG	2 cut(s)	273, 470
Fsp4HI	GCNGC	2 cut(s)	171, 309
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	2 cut(s)	171, 309
HaeIII	GGCC	3 cut(s)	138, 279, 414
HapII	CCGG	2 cut(s)	360, 561
HgaI	GACGC	2 cut(s)	10, 77
HhaI	GCGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	3 cut(s)	253, 308, 404
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	1 cut(s)	504
HpaII	CCGG	2 cut(s)	360, 561
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	2 cut(s)	320, 352
Hpy188III	TCNNGA	3 cut(s)	105, 360, 472
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	1 cut(s)	424
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	3 cut(s)	119, 356, 440
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	3 cut(s)	53, 286, 308
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 188, 308, 411
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	253, 308, 404
HspAI	GCGC	1 cut(s)	189
Kpn2I	TCCGGA	1 cut(s)	359
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	4 cut(s)	34, 362, 550, 601
LmnI	GCTCC	3 cut(s)	265, 371, 486
LpnPI	CCDG	4 cut(s)	353, 373, 428, 574
Lsp1109I	GCAGC	2 cut(s)	157, 320
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	4 cut(s)	36, 364, 552, 603
MboI	GATC	4 cut(s)	34, 362, 550, 601
MboII	GAAGA	4 cut(s)	23, 68, 71, 88
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	4 cut(s)	110, 388, 475, 556
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	9 cut(s)	104, 128, 255, 290, 445, 448, 477, 506, 509
MroI	TCCGGA	1 cut(s)	359
MspI	CCGG	2 cut(s)	360, 561
MspR9I	CCNGG	1 cut(s)	562
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	179, 188, 308, 411
NciI	CCSGG	1 cut(s)	562
NcoI	CCATGG	1 cut(s)	400
NdeII	GATC	4 cut(s)	34, 362, 550, 601
NlaIII	CATG	3 cut(s)	253, 308, 404
NlaIV	GGNNCC	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	504
PfoI	TCCNGGA	1 cut(s)	560
PkrI	GCNGC	2 cut(s)	172, 310
PspN4I	GGNNCC	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SatI	GCNGC	2 cut(s)	171, 309
Sau3AI	GATC	4 cut(s)	34, 362, 550, 601
ScrFI	CCNGG	1 cut(s)	562
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	5 cut(s)	184, 247, 435, 520, 600
SfaNI	GCATC	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	4 cut(s)	110, 388, 475, 556
SseBI	AGGCCT	1 cut(s)	279
SsiI	CCGC	1 cut(s)	405
SspMI	CTAG	1 cut(s)	174
StuI	AGGCCT	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	560
StyI	CCWWGG	2 cut(s)	129, 400
TaaI	ACNGT	3 cut(s)	119, 356, 440
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	2 cut(s)	104, 422
TasI	AATT	4 cut(s)	110, 388, 475, 556
TfiI	GAWTC	1 cut(s)	504
TscAI	CASTG	2 cut(s)	452, 514
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	2 cut(s)	170, 308
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	227, 510
TspGWI	ACGGA	3 cut(s)	41, 78, 384
TspRI	CASTG	2 cut(s)	452, 514
XapI	RAATTY	2 cut(s)	110, 388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	407
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.