Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013387

Physical Location & Seq

Genomic Coordinates Forward (+)

16566500 .. 16567120

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAAGATGAGGAGAAAGTTGTTACAACCCAAAATGGTGATGATCAAGGAAGCAATAAAGAAGAAGATGCAGCCTCAAGACTATTCCCTTGTCTCTTTTGTTCAAGGAAGTTTTACAGCTCTCAAGCCTTGGGAGGCCACCAAAACGCTCACAAGAAAGAAAGAACTGCTGCAAGAAAAGCAAAACGTGCCTCTGATCACTATGCGTCAGTCAATTTTCCATCACATATTGCACCACCACCAATGGTTTTTGCTCCAAATCATCACTTGGGCCTCTTGCACCCTTCAGTGTTCATGACTTCTCATGCTTCCAACCTCAGATACTTACCTAATCACCAATATTCAGACCGTTTCGGATCAAATGGTGCGCCCAAGTTTGGGAATCTGATGTACTATAGTGGGAATACATGTTCAAGCAATGTTAACAATGGTTACAATAGTCACTGTGAGGAAGATGAGAAGAGCTTCTTGAATTGGCAGAGGAACACAAGATGCAACGGTTTCGGTGGAGGGTCTTCTCAACATTCATCAATGATAACTGACAATCACAGTAGTCTTGGGAGTACTAATGATCATAAGGGTCATGAAGAGCATAAACTTGATCTTTCTCTCCATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.94

Weight (kDa)

6.97

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0013387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48890 AT5G48890
fragaria_vesca	FvH4_2g19520
malus_domestica	MD05G1179400.v1.1 MD10G1169000.v1.1
prunus_persica	Prupe.8G206700_v2.0.a1
pyrus_communis	pycom10g14570
rosa_chinensis	RchiOBHm_Chr6g0285241
rosa_laevigata	RLG00000012658
rosa_multiflora	Rmu_co8289007.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183390
rosa_rugosa	Rorug06G0173400
rosa_samantha	Rh6AG283900 Rh6BG284700 Rh6CG286300 Rh6DG279300
rosa_wichuraiana	Rw0G022070 Rw6G024430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	2 cut(s)	392, 565
AfiI	CCNNNNNNNGG	2 cut(s)	377, 378
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	105, 414, 472
AloI	GAACNNNNNNTCC	2 cut(s)	394, 426
AluBI	AGCT	2 cut(s)	120, 465
AluI	AGCT	2 cut(s)	120, 465
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	364
AoxI	GGCC	2 cut(s)	136, 271
ApeKI	GCWGC	2 cut(s)	71, 170
Asp700I	GAANNNNTTC	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	50, 326
BbsI	GAAGAC	1 cut(s)	507
BbvI	GCAGC	2 cut(s)	83, 157
BccI	CCATC	1 cut(s)	229
BcgI	CGANNNNNNTGC	2 cut(s)	484, 518
BclI	TGATCA	3 cut(s)	43, 196, 571
BcoDI	GTCTC	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	394
BisI	GCNGC	2 cut(s)	72, 171
BlsI	GCNGC	2 cut(s)	73, 172
BmcAI	AGTACT	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	271
BmsI	GCATC	2 cut(s)	58, 482
BpiI	GAAGAC	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	61, 108
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 378
Bse3DI	GCAATG	1 cut(s)	424
BseDI	CCNNGG	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	377, 378
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	83, 157
BshFI	GGCC	2 cut(s)	138, 273
BslI	CCNNNNNNNGG	2 cut(s)	377, 378
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	138, 273
Bsp143I	GATC	5 cut(s)	43, 196, 356, 571, 601
BspANI	GGCC	2 cut(s)	138, 273
BspCNI	CTCAG	1 cut(s)	330
BspHI	TCATGA	2 cut(s)	294, 583
BspPI	GGATC	1 cut(s)	364
BspQI	GCTCTTC	2 cut(s)	455, 582
BsrDI	GCAATG	1 cut(s)	424
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	5 cut(s)	43, 196, 356, 571, 601
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	4 cut(s)	350, 446, 500, 551
Bst6I	CTCTTC	2 cut(s)	455, 582
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	5 cut(s)	46, 199, 359, 574, 604
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	5 cut(s)	43, 196, 356, 571, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 188
BstNSI	RCATGY	1 cut(s)	411
BstSFI	CTRYAG	1 cut(s)	394
BstV1I	GCAGC	2 cut(s)	83, 157
BstV2I	GAAGAC	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	138, 273
BtsIMutI	CAGTG	2 cut(s)	294, 442
CciI	TCATGA	2 cut(s)	294, 583
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	2 cut(s)	391, 564
CviAII	CATG	4 cut(s)	295, 305, 408, 584
CviJI	RGCY	6 cut(s)	74, 120, 128, 138, 273, 465
CviKI_1	RGCY	6 cut(s)	74, 120, 128, 138, 273, 465
CviQI	GTAC	2 cut(s)	391, 564
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	5 cut(s)	45, 198, 358, 573, 603
DpnII	GATC	5 cut(s)	43, 196, 356, 571, 601
Eam1104I	CTCTTC	2 cut(s)	455, 582
EarI	CTCTTC	2 cut(s)	455, 582
Eco130I	CCWWGG	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	4 cut(s)	298, 308, 411, 587
FaiI	YATR	9 cut(s)	204, 228, 296, 306, 396, 409, 576, 585, 594
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FatI	CATG	4 cut(s)	294, 304, 407, 583
FbaI	TGATCA	3 cut(s)	43, 196, 571
Fnu4HI	GCNGC	2 cut(s)	72, 171
Fsp4HI	GCNGC	2 cut(s)	72, 171
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	2 cut(s)	72, 171
HaeIII	GGCC	2 cut(s)	138, 273
HgaI	GACGC	1 cut(s)	195
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	4 cut(s)	298, 308, 411, 587
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	1 cut(s)	382
HpaI	GTTAAC	1 cut(s)	424
HphI	GGTGA	2 cut(s)	50, 326
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	5 cut(s)	196, 320, 346, 356, 387
Hpy188III	TCNNGA	4 cut(s)	78, 295, 469, 584
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	1 cut(s)	294
HpyCH4III	ACNGT	4 cut(s)	350, 446, 500, 551
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	5 cut(s)	71, 173, 233, 280, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 188
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	4 cut(s)	298, 308, 411, 587
HspAI	GCGC	1 cut(s)	368
Ksp22I	TGATCA	3 cut(s)	43, 196, 571
KspAI	GTTAAC	1 cut(s)	424
Kzo9I	GATC	5 cut(s)	43, 196, 356, 571, 601
LguI	GCTCTTC	2 cut(s)	455, 582
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	2 cut(s)	83, 157
LweI	GCATC	2 cut(s)	58, 482
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	3 cut(s)	22, 431, 440
MalI	GATC	5 cut(s)	45, 198, 358, 573, 603
MboI	GATC	5 cut(s)	43, 196, 356, 571, 601
MboII	GAAGA	7 cut(s)	17, 74, 77, 464, 472, 507, 599
MluCI	AATT	2 cut(s)	214, 472
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	9 cut(s)	4, 85, 128, 202, 284, 326, 442, 474, 503
MroXI	GAANNNNTTC	1 cut(s)	464
MseI	TTAA	1 cut(s)	423
MwoI	GCNNNNNNNGC	2 cut(s)	179, 188
NdeII	GATC	5 cut(s)	43, 196, 356, 571, 601
NlaIII	CATG	4 cut(s)	298, 308, 411, 587
NmuCI	GTSAC	1 cut(s)	440
NspI	RCATGY	1 cut(s)	411
PagI	TCATGA	2 cut(s)	294, 583
PciI	ACATGT	1 cut(s)	407
PciSI	GCTCTTC	2 cut(s)	455, 582
PdmI	GAANNNNTTC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	2 cut(s)	73, 172
PscI	ACATGT	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	271
RsaI	GTAC	2 cut(s)	392, 565
RsaNI	GTAC	2 cut(s)	391, 564
SapI	GCTCTTC	2 cut(s)	455, 582
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	2 cut(s)	72, 171
Sau3AI	GATC	5 cut(s)	43, 196, 356, 571, 601
Sau96I	GGNCC	1 cut(s)	271
ScaI	AGTACT	1 cut(s)	565
SetI	ASST	5 cut(s)	122, 190, 318, 331, 467
SfaNI	GCATC	2 cut(s)	58, 482
SfcI	CTRYAG	1 cut(s)	394
SmlI	CTYRAG	2 cut(s)	76, 123
SmoI	CTYRAG	2 cut(s)	76, 123
Sse9I	AATT	2 cut(s)	214, 472
SspI	AATATT	1 cut(s)	341
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	4 cut(s)	350, 446, 500, 551
TaiI	ACGT	1 cut(s)	190
TasI	AATT	2 cut(s)	214, 472
TatI	WGTACW	2 cut(s)	390, 563
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	2 cut(s)	294, 449
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	2 cut(s)	71, 170
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	3 cut(s)	283, 516, 600
TspRI	CASTG	2 cut(s)	294, 449
XceI	RCATGY	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	464
ZrmI	AGTACT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.