Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013387

Physical Location & Seq

Genomic Coordinates Forward (+)

19341390 .. 19342958

Gene Structure 1569 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G206700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAAGACGAGGATCAGAAAGGCACAACCCATGTCGATCAAGAAAGCAATGAAGAAGACAGAGATACAACAACCACCTCAAGAGTTTTTCCATGTCTCTTCTGTTCAAGAAAGTTTTACAGTTCTCAAGCCTTGGGAGGCCACCAAAACGCTCACAAAAAGGAAAGAACAGCTGCAAGAAAGGCCAAACGAGCTTCTGAATATGCATCCTCAATGAACTTCCCAATACTTTCACACACTACACAACCGCCAATGGTTTTTGCTCCAAACCATCATCACCCTCTAGGCCTCCTGCATCCTTCAATGTATATAACTGCTCATGCAGCCAACCTCAGATACTTTCCCAGCCCTCAGCAATTCTCATCCGACGGTTTCGGATCCAACGGTGGAGCCAAGTTTGAGAATTTAGCGTACTATGGTGGAAATTGCTCATCAAGCAATAACATTAATGGTTATAAGTGTGAGGAGGATGAGCAGAGTTTCTTGAATTGGCAAAGGAGCACAAGGTACAATGGCTTCAGTGGAGGAGGAGGAGGTTCCTCTCAACATTCTTCAGTGAAAAATGGCAATCACAGTCCTGGGATTGGTGATAAGGGTAAAGAGCAAAAGCTTGATCTTTCTCTCCATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.15

Weight (kDa)

7.2

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0013387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48890 AT5G48890
fragaria_vesca	FvH4_2g19520
malus_domestica	MD05G1179400.v1.1 MD10G1169000.v1.1
prunus_persica	Prupe.8G206700_v2.0.a1
pyrus_communis	pycom10g14570
rosa_chinensis	RchiOBHm_Chr6g0285241
rosa_laevigata	RLG00000012658
rosa_multiflora	Rmu_co8289007.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183390
rosa_rugosa	Rorug06G0173400
rosa_samantha	Rh6AG283900 Rh6BG284700 Rh6CG286300 Rh6DG279300
rosa_wichuraiana	Rw0G022070 Rw6G024430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	3 cut(s)	21, 372, 385
AcsI	RAATTY	1 cut(s)	403
AcuI	CTGAAG	2 cut(s)	502, 537
AfaI	GTAC	2 cut(s)	413, 509
AfiI	CCNNNNNNNGG	1 cut(s)	584
AgsI	TTSAA	3 cut(s)	108, 303, 487
AjnI	CCWGG	1 cut(s)	577
AluBI	AGCT	3 cut(s)	173, 194, 610
AluI	AGCT	3 cut(s)	173, 194, 610
Alw21I	GWGCWC	1 cut(s)	503
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	3 cut(s)	21, 372, 385
AoxI	GGCC	3 cut(s)	139, 183, 286
ApeKI	GCWGC	2 cut(s)	173, 323
ApoI	RAATTY	1 cut(s)	403
AseI	ATTAAT	1 cut(s)	447
AsuHPI	GGTGA	2 cut(s)	269, 599
BamHI	GGATCC	1 cut(s)	377
BarI	GAAGNNNNNNTAC	2 cut(s)	500, 532
BbsI	GAAGAC	2 cut(s)	12, 63
Bbv12I	GWGCWC	1 cut(s)	503
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	160, 335
BccI	CCATC	1 cut(s)	279
BciT130I	CCWGG	1 cut(s)	579
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	284
BisI	GCNGC	2 cut(s)	174, 324
BlsI	GCNGC	2 cut(s)	175, 325
Bme1390I	CCNGG	1 cut(s)	579
BmiI	GGNNCC	3 cut(s)	379, 391, 538
BmrFI	CCNGG	1 cut(s)	579
BmsI	GCATC	2 cut(s)	215, 304
BpiI	GAAGAC	2 cut(s)	12, 63
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	2 cut(s)	64, 111
BsaJI	CCNNGG	2 cut(s)	132, 578
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	2 cut(s)	132, 578
BseGI	GGATG	4 cut(s)	206, 295, 362, 475
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	346, 365
BseRI	GAGGAG	4 cut(s)	479, 540, 543, 546
BseXI	GCAGC	2 cut(s)	160, 335
BseYI	CCCAGC	1 cut(s)	344
BshFI	GGCC	3 cut(s)	141, 185, 288
BsiHKAI	GWGCWC	1 cut(s)	503
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	141, 185, 288
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp143I	GATC	4 cut(s)	13, 37, 377, 613
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	3 cut(s)	141, 185, 288
BspCNI	CTCAG	2 cut(s)	345, 364
BspLI	GGNNCC	3 cut(s)	379, 391, 538
BspPI	GGATC	3 cut(s)	21, 372, 385
BsrDI	GCAATG	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	132, 578
BssMI	GATC	4 cut(s)	13, 37, 377, 613
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	4 cut(s)	122, 371, 386, 575
Bst6I	CTCTTC	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	332, 351
BstF5I	GGATG	4 cut(s)	206, 295, 362, 475
BstKTI	GATC	4 cut(s)	16, 40, 380, 616
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	4 cut(s)	13, 37, 377, 613
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 191, 323, 435
BstNI	CCWGG	1 cut(s)	579
BstSCI	CCNGG	1 cut(s)	577
BstV1I	GCAGC	2 cut(s)	160, 335
BstV2I	GAAGAC	2 cut(s)	12, 63
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
BsuRI	GGCC	3 cut(s)	141, 185, 288
BtsCI	GGATG	4 cut(s)	206, 295, 362, 475
BtsIMutI	CAGTG	2 cut(s)	526, 561
Csp6I	GTAC	2 cut(s)	412, 508
CviAII	CATG	3 cut(s)	32, 93, 320
CviQI	GTAC	2 cut(s)	412, 508
DdeI	CTNAG	2 cut(s)	332, 351
DpnI	GATC	4 cut(s)	15, 39, 379, 615
DpnII	GATC	4 cut(s)	13, 37, 377, 613
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	132
Eco147I	AGGCCT	1 cut(s)	288
Eco57I	CTGAAG	2 cut(s)	502, 537
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	132
EcoT22I	ATGCAT	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	3 cut(s)	35, 96, 323
FaiI	YATR	8 cut(s)	33, 94, 204, 309, 311, 321, 417, 456
FatI	CATG	3 cut(s)	31, 92, 319
Fnu4HI	GCNGC	2 cut(s)	174, 324
FokI	GGATG	4 cut(s)	193, 282, 349, 482
Fsp4HI	GCNGC	2 cut(s)	174, 324
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	2 cut(s)	174, 324
GsaI	CCCAGC	1 cut(s)	348
HaeIII	GGCC	3 cut(s)	141, 185, 288
Hin1II	CATG	3 cut(s)	35, 96, 323
HindIII	AAGCTT	1 cut(s)	608
HphI	GGTGA	2 cut(s)	269, 599
Hpy188I	TCNGA	5 cut(s)	18, 199, 335, 367, 377
Hpy188III	TCNNGA	4 cut(s)	41, 81, 108, 484
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	4 cut(s)	122, 371, 386, 575
HpyCH4V	TGCA	4 cut(s)	176, 206, 295, 323
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 191, 323, 435
HpyF3I	CTNAG	2 cut(s)	332, 351
Hsp92II	CATG	3 cut(s)	35, 96, 323
Kzo9I	GATC	4 cut(s)	13, 37, 377, 613
LmnI	GCTCC	3 cut(s)	268, 389, 498
LpnPI	CCDG	4 cut(s)	305, 358, 564, 591
Lsp1109I	GCAGC	2 cut(s)	160, 335
LweI	GCATC	2 cut(s)	215, 304
MaeI	CTAG	1 cut(s)	284
MalI	GATC	4 cut(s)	15, 39, 379, 615
MboI	GATC	4 cut(s)	13, 37, 377, 613
MboII	GAAGA	5 cut(s)	17, 65, 68, 91, 543
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	503
MluCI	AATT	4 cut(s)	356, 403, 424, 487
MmeI	TCCRAC	2 cut(s)	390, 405
Mph1103I	ATGCAT	1 cut(s)	208
MseI	TTAA	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	579
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	4 cut(s)	182, 191, 323, 435
NdeII	GATC	4 cut(s)	13, 37, 377, 613
NlaIII	CATG	3 cut(s)	35, 96, 323
NlaIV	GGNNCC	3 cut(s)	379, 391, 538
NsiI	ATGCAT	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	175, 325
PshBI	ATTAAT	1 cut(s)	447
PsiI	TTATAA	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	577
PspFI	CCCAGC	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	3 cut(s)	379, 391, 538
PsuI	RGATCY	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	413, 509
RsaNI	GTAC	2 cut(s)	412, 508
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	2 cut(s)	174, 324
Sau3AI	GATC	4 cut(s)	13, 37, 377, 613
ScrFI	CCNGG	1 cut(s)	579
SduI	GDGCHC	1 cut(s)	503
SetI	ASST	7 cut(s)	80, 175, 196, 333, 509, 538, 612
SfaNI	GCATC	2 cut(s)	215, 304
SmlI	CTYRAG	2 cut(s)	79, 126
SmoI	CTYRAG	2 cut(s)	79, 126
Sse9I	AATT	4 cut(s)	356, 403, 424, 487
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	1 cut(s)	284
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	577
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	4 cut(s)	122, 371, 386, 575
TaqI	TCGA	1 cut(s)	36
TasI	AATT	4 cut(s)	356, 403, 424, 487
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	526, 561
TseI	GCWGC	2 cut(s)	173, 323
TspDTI	ATGAA	2 cut(s)	66, 230
TspRI	CASTG	2 cut(s)	526, 561
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	1 cut(s)	403
XspI	CTAG	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.