Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013387

Physical Location & Seq

Genomic Coordinates Forward (+)

30706961 .. 30707782

Gene Structure 822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1179400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCGCCAAACCTCCAAGACACTTATCTCAAATCTTCCTTTGTTTTCTCTGTCGCTTATTTCTCAACTCTCTACCCATTTCTTCAACTCTTCTACTGCCTCTCAAGACATGGAAGACGAAGAGAAAGACGTCACGGAAGTTGATCACCAAGAGAGCAATGCAGAAGAAGATAGAGACGCAAACTCAAGAGTGTTTCCGTGCCTCTTTTGTTCAAGAAAGTTTTACAGTTCTCAAGCACTGGGAGGGCACCAAAACGCTCATAAGAAAGAAAGAACGGCTGCAAGAAAAGCGAAACGCGCTTCTGACTACGCTTCCTCGATGAATTTCCCAATACTATCCCATAACACACAACCCCACATGGTTTTTACTCCAAACTATCACTTAGGCCTCTTGCATCCGTATATAACTCCCCATGCATCCAATCTCCGATACTTTCCGAATCCTGACCAGTTCTCATCAGACAGTTTCGGATCCAACGGAGCACCAAAGTTTGAGAATTTAGTATATTATGGTGGGAATTGCTCGTCGCCGAGCAATAACATGAATGGTTATCAGTGTGAGGAGGATGATCAAAGTTTCTTAAATTGGCAGAGGAGCATAAGAAGATATAACGGCCTCAGTGGAGGAGGTTCATCACAACATTCATCAATGGCGAATGGGAATCACAATTCCGGGATTGGTGGTGAATGTAAGGGTAAAGAGCAAAAGCTTGATCTTTCTCTCCATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.14

Weight (kDa)

6.45

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48890 AT5G48890
fragaria_vesca	FvH4_2g19520
malus_domestica	MD05G1179400.v1.1 MD10G1169000.v1.1
prunus_persica	Prupe.8G206700_v2.0.a1
pyrus_communis	pycom10g14570
rosa_chinensis	RchiOBHm_Chr6g0285241
rosa_laevigata	RLG00000012658
rosa_multiflora	Rmu_co8289007.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183390
rosa_rugosa	Rorug06G0173400
rosa_samantha	Rh6AG283900 Rh6BG284700 Rh6CG286300 Rh6DG279300
rosa_wichuraiana	Rw0G022070 Rw6G024430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	246
AccII	CGCG	1 cut(s)	297
AclWI	GGATC	2 cut(s)	465, 478
AcsI	RAATTY	2 cut(s)	322, 496
AcyI	GRCGYC	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	85, 213
AluBI	AGCT	1 cut(s)	709
AluI	AGCT	1 cut(s)	709
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	465, 478
AoxI	GGCC	2 cut(s)	385, 613
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	2 cut(s)	322, 496
AspLEI	GCGC	2 cut(s)	6, 299
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	2 cut(s)	137, 695
BaeGI	GKGCMC	1 cut(s)	249
BamHI	GGATCC	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	1 cut(s)	265
BceAI	ACGGC	2 cut(s)	291, 628
BclI	TGATCA	2 cut(s)	142, 568
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	1 cut(s)	168
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	673
BmiI	GGNNCC	2 cut(s)	248, 472
BmrFI	CCNGG	1 cut(s)	673
BmrI	ACTGGG	1 cut(s)	248
BmsI	GCATC	2 cut(s)	403, 425
BmuI	ACTGGG	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	120
BpuEI	CTTGAG	3 cut(s)	87, 169, 216
BpuMI	CCSGG	1 cut(s)	673
BsaHI	GRCGYC	1 cut(s)	129
Bse1I	ACTGG	2 cut(s)	243, 448
Bse3DI	GCAATG	1 cut(s)	163
BseGI	GGATG	3 cut(s)	394, 416, 571
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	631
BseNI	ACTGG	2 cut(s)	243, 448
BseRI	GAGGAG	3 cut(s)	575, 607, 639
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	265
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	2 cut(s)	387, 615
BshNI	GGYRCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	484
BsiSI	CCGG	1 cut(s)	672
BsmAI	GTCTC	1 cut(s)	168
BsmBI	CGTCTC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	387, 615
Bsp1286I	GDGCHC	2 cut(s)	249, 484
Bsp143I	GATC	4 cut(s)	142, 470, 568, 712
BspANI	GGCC	2 cut(s)	387, 615
BspCNI	CTCAG	1 cut(s)	630
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	248, 472
BspPI	GGATC	2 cut(s)	465, 478
BspT107I	GGYRCC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	243, 448
BssMI	GATC	4 cut(s)	142, 470, 568, 712
BssNI	GRCGYC	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	227, 464
Bst6I	CTCTTC	2 cut(s)	94, 114
BstACI	GRCGYC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	382, 617
BstF5I	GGATG	3 cut(s)	394, 416, 571
BstFNI	CGCG	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	6, 299
BstKTI	GATC	4 cut(s)	145, 473, 571, 715
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	4 cut(s)	142, 470, 568, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 296
BstSCI	CCNGG	1 cut(s)	671
BstSLI	GKGCMC	1 cut(s)	249
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	387, 615
BtsCI	GGATG	3 cut(s)	394, 416, 571
BtsIMutI	CAGTG	3 cut(s)	236, 560, 625
CfoI	GCGC	2 cut(s)	6, 299
CseI	GACGC	1 cut(s)	185
CviAII	CATG	4 cut(s)	109, 358, 413, 541
CviJI	RGCY	4 cut(s)	278, 387, 615, 709
CviKI_1	RGCY	4 cut(s)	278, 387, 615, 709
DdeI	CTNAG	2 cut(s)	382, 617
DpnI	GATC	4 cut(s)	144, 472, 570, 714
DpnII	GATC	4 cut(s)	142, 470, 568, 712
Eam1104I	CTCTTC	2 cut(s)	94, 114
EarI	CTCTTC	2 cut(s)	94, 114
Eco147I	AGGCCT	1 cut(s)	387
EcoT22I	ATGCAT	1 cut(s)	418
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	4 cut(s)	112, 361, 416, 544
FatI	CATG	4 cut(s)	108, 357, 412, 540
FbaI	TGATCA	2 cut(s)	142, 568
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	3 cut(s)	381, 403, 578
Fsp4HI	GCNGC	1 cut(s)	279
GlaI	GCGC	2 cut(s)	5, 298
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	387, 615
HapII	CCGG	1 cut(s)	672
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	2 cut(s)	6, 299
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	4 cut(s)	112, 361, 416, 544
Hin6I	GCGC	2 cut(s)	4, 297
HinP1I	GCGC	2 cut(s)	4, 297
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	2 cut(s)	439, 661
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	2 cut(s)	137, 695
Hpy188I	TCNGA	5 cut(s)	304, 428, 438, 460, 470
Hpy188III	TCNNGA	4 cut(s)	104, 186, 213, 443
Hpy99I	CGWCG	1 cut(s)	529
HpyCH4III	ACNGT	2 cut(s)	227, 464
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	4 cut(s)	161, 281, 394, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 296
HpyF3I	CTNAG	2 cut(s)	382, 617
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	4 cut(s)	112, 361, 416, 544
HspAI	GCGC	2 cut(s)	4, 297
Ksp22I	TGATCA	2 cut(s)	142, 568
Kzo9I	GATC	4 cut(s)	142, 470, 568, 712
LmnI	GCTCC	2 cut(s)	479, 594
LpnPI	CCDG	4 cut(s)	224, 456, 461, 685
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	2 cut(s)	403, 425
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	4 cut(s)	144, 472, 570, 714
MboI	GATC	4 cut(s)	142, 470, 568, 712
MboII	GAAGA	8 cut(s)	26, 73, 81, 125, 131, 176, 179, 615
MflI	RGATCY	1 cut(s)	470
MhlI	GDGCHC	2 cut(s)	249, 484
MluCI	AATT	5 cut(s)	322, 496, 517, 583, 667
MmeI	TCCRAC	1 cut(s)	498
Mph1103I	ATGCAT	1 cut(s)	418
MseI	TTAA	1 cut(s)	581
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	1 cut(s)	673
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	287, 296
NciI	CCSGG	1 cut(s)	673
NdeII	GATC	4 cut(s)	142, 470, 568, 712
NlaIII	CATG	4 cut(s)	112, 361, 416, 544
NlaIV	GGNNCC	2 cut(s)	248, 472
NmeAIII	GCCGAG	1 cut(s)	555
NmuCI	GTSAC	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	418
PceI	AGGCCT	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	439, 661
PfoI	TCCNGGA	1 cut(s)	671
PkrI	GCNGC	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	248, 472
PsuI	RGATCY	1 cut(s)	470
SaqAI	TTAA	1 cut(s)	581
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	4 cut(s)	142, 470, 568, 712
ScrFI	CCNGG	1 cut(s)	673
SduI	GDGCHC	2 cut(s)	249, 484
SetI	ASST	4 cut(s)	14, 132, 631, 711
SfaNI	GCATC	2 cut(s)	403, 425
SmlI	CTYRAG	3 cut(s)	102, 184, 231
SmoI	CTYRAG	3 cut(s)	102, 184, 231
Sse9I	AATT	5 cut(s)	322, 496, 517, 583, 667
SseBI	AGGCCT	1 cut(s)	387
StuI	AGGCCT	1 cut(s)	387
StyD4I	CCNGG	1 cut(s)	671
TaaI	ACNGT	2 cut(s)	227, 464
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	317
TasI	AATT	5 cut(s)	322, 496, 517, 583, 667
TfiI	GAWTC	2 cut(s)	439, 661
Tru1I	TTAA	1 cut(s)	581
Tru9I	TTAA	1 cut(s)	581
TscAI	CASTG	3 cut(s)	243, 560, 625
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	4 cut(s)	335, 557, 621, 633
TspGWI	ACGGA	4 cut(s)	149, 186, 387, 492
TspRI	CASTG	3 cut(s)	243, 560, 625
XapI	RAATTY	2 cut(s)	322, 496
ZraI	GACGTC	1 cut(s)	130
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.