Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013387

Physical Location & Seq

Genomic Coordinates Reverse (-)

21003986 .. 21005233

Gene Structure 1248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012658

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAAGGTGAGGAGAAAGTAGTCACAAAACAAAATGGTAATGATCAACCAAGCAATAAAGAAGAAGATGCAGCATCAAGACTATTTCCTTGTCTCTTCTGTTCAAGGAAGTTCTACAGCTCTCAAGCCTTGGGAGGCCACCAAAACGCTCACAAAAAGGAAAGAACTGCTGCAAGAAAAGCCAAACGTGCCTCTGATCACTATGCATCAGTCACTTTTCCTTCTCATATTTCACCACCCCCAATGGTGTTTGCTCCAAATCATCACTTGGGCCTCTTGCACCCTTCAATGTTCATGACTGCTCATGCTTCCAACCTCAGATACTACCCCAATCACCAATATTCGGACCGTTTCGGGTCAAATGGTGCGCCCAAGTTCGAGAATTTAGTGTACTATGGTGGGAATACCTGTTCCAGCTATGTTAACAATGGTTACAATAGTAACAGTGAGGAAGATGAGAAGAGCTTCTTAAATTGGCAGAGGAGCCCCAGATGCCATGGTTTCAGCGGAGATGGAGCAATACATAGTTATATGTTTCACCTAATTACGTTGTGTTACTATGTCAATTTTCCTTCTCATATTCCACCACCAACGGTTTTTGCTCCAAATCATCACTTGGGCTTCTTGCACCCTTCATTGTTCATGACTGCTCGTGCTTCCAACCTCAAATACTTCCCCAATCACCAATATTCGGACCGTTTTGGGTCAATGCTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

27.12

Weight (kDa)

8.9

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48890 AT5G48890
fragaria_vesca	FvH4_2g19520
malus_domestica	MD05G1179400.v1.1 MD10G1169000.v1.1
prunus_persica	Prupe.8G206700_v2.0.a1
pyrus_communis	pycom10g14570
rosa_chinensis	RchiOBHm_Chr6g0285241
rosa_laevigata	RLG00000012658
rosa_multiflora	Rmu_co8289007.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183390
rosa_rugosa	Rorug06G0173400
rosa_samantha	Rh6AG283900 Rh6BG284700 Rh6CG286300 Rh6DG279300
rosa_wichuraiana	Rw0G022070 Rw6G024430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	507
AcsI	RAATTY	1 cut(s)	382
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	2 cut(s)	343, 691
AgsI	TTSAA	2 cut(s)	105, 288
AloI	GAACNNNNNNTCC	2 cut(s)	394, 426
AluBI	AGCT	3 cut(s)	120, 417, 465
AluI	AGCT	3 cut(s)	120, 417, 465
Alw26I	GTCTC	1 cut(s)	98
AoxI	GGCC	2 cut(s)	136, 271
ApeKI	GCWGC	2 cut(s)	71, 170
ApoI	RAATTY	1 cut(s)	382
Asp700I	GAANNNNTTC	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	3 cut(s)	271, 346, 694
AsuHPI	GGTGA	5 cut(s)	20, 225, 326, 530, 674
AvaII	GGWCC	2 cut(s)	346, 694
BanII	GRGCYC	1 cut(s)	488
BauI	CACGAG	1 cut(s)	651
BbvI	GCAGC	2 cut(s)	83, 157
BccI	CCATC	1 cut(s)	506
BclI	TGATCA	2 cut(s)	43, 196
BcoDI	GTCTC	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	115
BisI	GCNGC	2 cut(s)	72, 171
BlsI	GCNGC	2 cut(s)	73, 172
Bme18I	GGWCC	2 cut(s)	346, 694
BmgT120I	GGNCC	3 cut(s)	271, 346, 694
BmiI	GGNNCC	1 cut(s)	485
BmsI	GCATC	4 cut(s)	58, 83, 215, 482
BpuEI	CTTGAG	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	129, 496
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 691
BseDI	CCNNGG	2 cut(s)	129, 496
BseLI	CCNNNNNNNGG	2 cut(s)	343, 691
BseMII	CTCAG	1 cut(s)	331
BseRI	GAGGAG	2 cut(s)	26, 496
BseXI	GCAGC	2 cut(s)	83, 157
BshFI	GGCC	2 cut(s)	138, 273
BslI	CCNNNNNNNGG	2 cut(s)	343, 691
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	138, 273
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	2 cut(s)	43, 196
Bsp19I	CCATGG	1 cut(s)	496
BspACI	CCGC	1 cut(s)	507
BspANI	GGCC	2 cut(s)	138, 273
BspCNI	CTCAG	1 cut(s)	330
BspHI	TCATGA	2 cut(s)	294, 642
BspLI	GGNNCC	1 cut(s)	485
BspQI	GCTCTTC	1 cut(s)	455
BssECI	CCNNGG	2 cut(s)	129, 496
BssMI	GATC	2 cut(s)	43, 196
BssSI	CACGAG	1 cut(s)	651
BssT1I	CCWWGG	2 cut(s)	129, 496
Bst2BI	CACGAG	1 cut(s)	651
Bst4CI	ACNGT	4 cut(s)	350, 446, 595, 698
Bst6I	CTCTTC	2 cut(s)	101, 455
BstDEI	CTNAG	1 cut(s)	317
BstDSI	CCRYGG	1 cut(s)	496
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	2 cut(s)	46, 199
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	43, 196
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 188, 492
BstSFI	CTRYAG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	83, 157
BsuRI	GGCC	2 cut(s)	138, 273
BtgI	CCRYGG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	451
CciI	TCATGA	2 cut(s)	294, 642
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	3 cut(s)	271, 346, 694
CpoI	CGGWCCG	2 cut(s)	346, 694
Csp6I	GTAC	1 cut(s)	391
CspI	CGGWCCG	2 cut(s)	346, 694
CviAII	CATG	4 cut(s)	295, 305, 497, 643
CviJI	RGCY	9 cut(s)	120, 128, 138, 182, 273, 417, 465, 486, 621
CviKI_1	RGCY	9 cut(s)	120, 128, 138, 182, 273, 417, 465, 486, 621
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	2 cut(s)	45, 198
DpnII	GATC	2 cut(s)	43, 196
Eam1104I	CTCTTC	2 cut(s)	101, 455
EarI	CTCTTC	2 cut(s)	101, 455
Eco130I	CCWWGG	2 cut(s)	129, 496
Eco24I	GRGCYC	1 cut(s)	488
Eco47I	GGWCC	2 cut(s)	346, 694
EcoT14I	CCWWGG	2 cut(s)	129, 496
EcoT22I	ATGCAT	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	488
ErhI	CCWWGG	2 cut(s)	129, 496
FaeI	CATG	4 cut(s)	298, 308, 500, 646
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FatI	CATG	4 cut(s)	294, 304, 496, 642
FbaI	TGATCA	2 cut(s)	43, 196
Fnu4HI	GCNGC	2 cut(s)	72, 171
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	2 cut(s)	72, 171
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	2 cut(s)	72, 171
HaeIII	GGCC	2 cut(s)	138, 273
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	4 cut(s)	298, 308, 500, 646
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HpaI	GTTAAC	1 cut(s)	424
HphI	GGTGA	5 cut(s)	20, 225, 326, 530, 674
Hpy166II	GTNNAC	2 cut(s)	391, 424
Hpy188I	TCNGA	4 cut(s)	196, 320, 346, 694
Hpy188III	TCNNGA	4 cut(s)	78, 295, 379, 643
Hpy8I	GTNNAC	2 cut(s)	391, 424
HpyAV	CCTTC	4 cut(s)	231, 294, 582, 642
HpyCH4III	ACNGT	4 cut(s)	350, 446, 595, 698
HpyCH4IV	ACGT	2 cut(s)	187, 548
HpyCH4V	TGCA	5 cut(s)	71, 173, 206, 280, 628
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 188, 492
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	2 cut(s)	187, 548
Hsp92II	CATG	4 cut(s)	298, 308, 500, 646
HspAI	GCGC	1 cut(s)	368
Ksp22I	TGATCA	2 cut(s)	43, 196
KspAI	GTTAAC	1 cut(s)	424
Kzo9I	GATC	2 cut(s)	43, 196
LguI	GCTCTTC	1 cut(s)	455
LmnI	GCTCC	5 cut(s)	259, 483, 515, 607, 717
LpnPI	CCDG	3 cut(s)	421, 427, 502
Lsp1109I	GCAGC	2 cut(s)	83, 157
LweI	GCATC	4 cut(s)	58, 83, 215, 482
MaeII	ACGT	2 cut(s)	187, 548
MaeIII	GTNAC	5 cut(s)	22, 211, 431, 440, 554
MalI	GATC	2 cut(s)	45, 198
MboI	GATC	2 cut(s)	43, 196
MboII	GAAGA	5 cut(s)	74, 77, 88, 464, 472
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	4 cut(s)	382, 472, 543, 565
MmeI	TCCRAC	2 cut(s)	336, 684
MnlI	CCTC	8 cut(s)	4, 128, 202, 284, 326, 442, 474, 674
Mph1103I	ATGCAT	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	464
MseI	TTAA	2 cut(s)	423, 470
MspA1I	CMGCKG	1 cut(s)	507
MwoI	GCNNNNNNNGC	3 cut(s)	179, 188, 492
NcoI	CCATGG	1 cut(s)	496
NdeII	GATC	2 cut(s)	43, 196
NlaIII	CATG	4 cut(s)	298, 308, 500, 646
NlaIV	GGNNCC	1 cut(s)	485
NmuCI	GTSAC	2 cut(s)	22, 211
NsiI	ATGCAT	1 cut(s)	208
PagI	TCATGA	2 cut(s)	294, 642
PciSI	GCTCTTC	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	73, 172
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	3 cut(s)	271, 346, 694
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
Rsr2I	CGGWCCG	2 cut(s)	346, 694
RsrII	CGGWCCG	2 cut(s)	346, 694
SapI	GCTCTTC	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	423, 470
SatI	GCNGC	2 cut(s)	72, 171
Sau3AI	GATC	2 cut(s)	43, 196
Sau96I	GGNCC	3 cut(s)	271, 346, 694
SduI	GDGCHC	1 cut(s)	488
SfaNI	GCATC	4 cut(s)	58, 83, 215, 482
SfcI	CTRYAG	1 cut(s)	115
SinI	GGWCC	2 cut(s)	346, 694
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	4 cut(s)	382, 472, 543, 565
SsiI	CCGC	1 cut(s)	507
SspI	AATATT	2 cut(s)	341, 689
StyI	CCWWGG	2 cut(s)	129, 496
TaaI	ACNGT	4 cut(s)	350, 446, 595, 698
TaiI	ACGT	2 cut(s)	190, 551
TaqI	TCGA	1 cut(s)	378
TasI	AATT	4 cut(s)	382, 472, 543, 565
TatI	WGTACW	1 cut(s)	390
Tru1I	TTAA	2 cut(s)	423, 470
Tru9I	TTAA	2 cut(s)	423, 470
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	2 cut(s)	22, 211
TseI	GCWGC	2 cut(s)	71, 170
Tsp45I	GTSAC	2 cut(s)	22, 211
TspDTI	ATGAA	3 cut(s)	283, 624, 631
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	2 cut(s)	346, 694
XapI	RAATTY	1 cut(s)	382
XmnI	GAANNNNTTC	1 cut(s)	464
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.