Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013387

Physical Location & Seq

Genomic Coordinates Reverse (-)

22485986 .. 22486609

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00183390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGAAGGTGAGGAGAAAGTAGTCACAACACAAAATGGTAATGATCAAGCAAGCAATAAAGAAGAAGATGCAGCATCAAGACTATTTCCTTGTCTCTTCTGTTCAAGGAAGTTCTACAGCTCTCAAGCCCTGGGAGGCCACCAAAACGCTCACAAAAAGGAAAGAACAGCTGCAAGAAAAGCCAAACGTGCCTCTGATCACCATGCATCAGTCACTTTTCCTTCTCATATTTCACCACCTCCAATGGTTTTTGCTCCAAATCATCACTTGGGCCTGTTGCACCCTTCAATGTTCATGACTGCTCATGCTTCCAACCTCAGATACTACCCCAATCACCAATATTCCGACCGTTTCGGGTCAAATGGTGCGCCCAAGTTTGAGAATTTAGTGTACTGTGGTGGGAATACCTGTTCCAGCTATGTTAACAATGGTTACAATAGTAACAGTGAGGAAGATGAGAAGAGCTTCTTAAATTGGCAGAGGAGCCCAAGATCCTATGGTTTCAGCGGAGAGTCTTCTCAACAACATTCATCAATGATAACTAACAATCACAATAGTCTTGGGATTAATAGTGATCATAAGGGTCATGAAGAGCAAAAGCTTGACCTATCTCTCCGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.18

Weight (kDa)

7.8

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48890 AT5G48890
fragaria_vesca	FvH4_2g19520
malus_domestica	MD05G1179400.v1.1 MD10G1169000.v1.1
prunus_persica	Prupe.8G206700_v2.0.a1
pyrus_communis	pycom10g14570
rosa_chinensis	RchiOBHm_Chr6g0285241
rosa_laevigata	RLG00000012658
rosa_multiflora	Rmu_co8289007.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183390
rosa_rugosa	Rorug06G0173400
rosa_samantha	Rh6AG283900 Rh6BG284700 Rh6CG286300 Rh6DG279300
rosa_wichuraiana	Rw0G022070 Rw6G024430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	507
AclWI	GGATC	1 cut(s)	486
AcsI	RAATTY	1 cut(s)	382
AfaI	GTAC	1 cut(s)	392
AgsI	TTSAA	2 cut(s)	105, 288
AjnI	CCWGG	1 cut(s)	129
AloI	GAACNNNNNNTCC	2 cut(s)	394, 426
AluBI	AGCT	5 cut(s)	120, 170, 417, 465, 601
AluI	AGCT	5 cut(s)	120, 170, 417, 465, 601
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	486
AoxI	GGCC	2 cut(s)	136, 271
ApeKI	GCWGC	2 cut(s)	71, 170
ApoI	RAATTY	1 cut(s)	382
AseI	ATTAAT	1 cut(s)	567
Asp700I	GAANNNNTTC	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	4 cut(s)	20, 191, 225, 326
BanII	GRGCYC	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	507
BbvI	GCAGC	2 cut(s)	83, 157
BciT130I	CCWGG	1 cut(s)	131
BclI	TGATCA	3 cut(s)	43, 196, 574
BcoDI	GTCTC	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	115
BisI	GCNGC	2 cut(s)	72, 171
BlsI	GCNGC	2 cut(s)	73, 172
Bme1390I	CCNGG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	3 cut(s)	58, 83, 215
BpiI	GAAGAC	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	129, 130
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	129, 130
BseMII	CTCAG	1 cut(s)	331
BseRI	GAGGAG	2 cut(s)	26, 496
BseXI	GCAGC	2 cut(s)	83, 157
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	2 cut(s)	138, 273
BsiEI	CGRYCG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	138, 273
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	4 cut(s)	43, 196, 491, 574
BspACI	CCGC	1 cut(s)	507
BspANI	GGCC	2 cut(s)	138, 273
BspCNI	CTCAG	1 cut(s)	330
BspHI	TCATGA	2 cut(s)	294, 586
BspLI	GGNNCC	1 cut(s)	485
BspPI	GGATC	1 cut(s)	486
BspQI	GCTCTTC	2 cut(s)	455, 585
BssECI	CCNNGG	2 cut(s)	129, 130
BssMI	GATC	4 cut(s)	43, 196, 491, 574
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	3 cut(s)	350, 395, 446
Bst6I	CTCTTC	3 cut(s)	101, 455, 585
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	4 cut(s)	46, 199, 494, 577
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	4 cut(s)	43, 196, 491, 574
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 188
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	83, 157
BstV2I	GAAGAC	1 cut(s)	507
BstX2I	RGATCY	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	491
BsuRI	GGCC	2 cut(s)	138, 273
BtsIMutI	CAGTG	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	52
CciI	TCATGA	2 cut(s)	294, 586
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	4 cut(s)	203, 295, 305, 587
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	4 cut(s)	45, 198, 493, 576
DpnII	GATC	4 cut(s)	43, 196, 491, 574
Eam1104I	CTCTTC	3 cut(s)	101, 455, 585
EarI	CTCTTC	3 cut(s)	101, 455, 585
Eco24I	GRGCYC	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	129
EcoT22I	ATGCAT	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	488
FaeI	CATG	4 cut(s)	206, 298, 308, 590
FaiI	YATR	8 cut(s)	204, 228, 296, 306, 420, 498, 579, 588
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FatI	CATG	4 cut(s)	202, 294, 304, 586
FbaI	TGATCA	3 cut(s)	43, 196, 574
Fnu4HI	GCNGC	2 cut(s)	72, 171
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	2 cut(s)	72, 171
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	2 cut(s)	72, 171
HaeIII	GGCC	2 cut(s)	138, 273
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	4 cut(s)	206, 298, 308, 590
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	1 cut(s)	512
HpaI	GTTAAC	1 cut(s)	424
HphI	GGTGA	4 cut(s)	20, 191, 225, 326
Hpy166II	GTNNAC	2 cut(s)	391, 424
Hpy188I	TCNGA	3 cut(s)	196, 320, 346
Hpy188III	TCNNGA	3 cut(s)	78, 295, 587
Hpy8I	GTNNAC	2 cut(s)	391, 424
HpyAV	CCTTC	2 cut(s)	231, 294
HpyCH4III	ACNGT	3 cut(s)	350, 395, 446
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	4 cut(s)	71, 173, 206, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 188
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	4 cut(s)	206, 298, 308, 590
HspAI	GCGC	1 cut(s)	368
Ksp22I	TGATCA	3 cut(s)	43, 196, 574
KspAI	GTTAAC	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	43, 196, 491, 574
LguI	GCTCTTC	2 cut(s)	455, 585
LmnI	GCTCC	2 cut(s)	259, 483
LpnPI	CCDG	5 cut(s)	116, 143, 287, 421, 427
Lsp1109I	GCAGC	2 cut(s)	83, 157
LweI	GCATC	3 cut(s)	58, 83, 215
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	4 cut(s)	22, 211, 431, 440
MalI	GATC	4 cut(s)	45, 198, 493, 576
MboI	GATC	4 cut(s)	43, 196, 491, 574
MboII	GAAGA	7 cut(s)	74, 77, 88, 464, 472, 507, 602
MflI	RGATCY	1 cut(s)	491
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	2 cut(s)	382, 472
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	2 cut(s)	336, 369
MnlI	CCTC	7 cut(s)	4, 128, 202, 249, 326, 442, 474
Mph1103I	ATGCAT	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	464
MseI	TTAA	3 cut(s)	423, 470, 567
MspA1I	CMGCKG	2 cut(s)	170, 507
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	179, 188
NdeII	GATC	4 cut(s)	43, 196, 491, 574
NlaIII	CATG	4 cut(s)	206, 298, 308, 590
NlaIV	GGNNCC	1 cut(s)	485
NmuCI	GTSAC	2 cut(s)	22, 211
NsiI	ATGCAT	1 cut(s)	208
PagI	TCATGA	2 cut(s)	294, 586
PasI	CCCWGGG	1 cut(s)	130
PciSI	GCTCTTC	2 cut(s)	455, 585
PdmI	GAANNNNTTC	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	73, 172
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PshBI	ATTAAT	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	491
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SapI	GCTCTTC	2 cut(s)	455, 585
SaqAI	TTAA	3 cut(s)	423, 470, 567
SatI	GCNGC	2 cut(s)	72, 171
Sau3AI	GATC	4 cut(s)	43, 196, 491, 574
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	488
SfaNI	GCATC	3 cut(s)	58, 83, 215
SfcI	CTRYAG	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	2 cut(s)	382, 472
SsiI	CCGC	1 cut(s)	507
SspI	AATATT	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	3 cut(s)	350, 395, 446
TaiI	ACGT	1 cut(s)	190
TasI	AATT	2 cut(s)	382, 472
TatI	WGTACW	1 cut(s)	390
Tru1I	TTAA	3 cut(s)	423, 470, 567
Tru9I	TTAA	3 cut(s)	423, 470, 567
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	2 cut(s)	22, 211
TseI	GCWGC	2 cut(s)	71, 170
Tsp45I	GTSAC	2 cut(s)	22, 211
TspDTI	ATGAA	3 cut(s)	283, 519, 603
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	1 cut(s)	451
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	1 cut(s)	382
XmnI	GAANNNNTTC	1 cut(s)	464
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.