AT5G49650

xylulose

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
20152731 .. 20156613
3883 bp
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UTR
Exon/CDS
Intron
AT5G49650.1

Sequence Viewer

Length: 1677 bp
ATGGCGGATCTCTCTCTTCCTCCCGATTCCCTCTTCCTCGGCTTCGACAGCTCTACCCAGTCAATGAAAGCAACTGTGTTGGATTCGAACCTGAACATTATCAAAACCGAACTCGTTCATTTCGATTCTGATCTTCCTCAATACAAAACCAAAGACGGGGTTTACAGAGACACTACTGTAAACGGAAGAATCGTATCTCCAACTCTCATGTGGGTCGAAGCATTTGATCTCATTCTCCAGAAGCTCTCTAACGCCAATTTCGATTTCGCCAAAGTTATCGCTGTTTCAGGCAGCGGGCAACAACACGGTAGTGTGTATTGGTCAAAAGGTAGTTCTGAGGTATTGAGATCATTGGATTCAAAGAGATCATTGAAAGAACAACTCGAAAACGCTTTTTCGGTTAAGGAATCTCCTATATGGATGGATAGTAGTACTACATTGCAATGTAAAGAGATTGAGAATGCTGTTGGTGGAGCTATGGAGTTGTCGAAGATCACTGGCTCTCGTGCTTATGAGCGGTTTACTGGTCCGCAGATACGGAAGCTTTTTATGACTCAGGGGGAGGTGTATAAGAGCACGGAGAGGATTTCGCTTGTTAGCTCTTTTATGGCGTCTTTGTTGGTTGGAGATTATGCTTGTATTGATGAAACTGATGCTGCTGGGATGAATTTGATGGATATTGAGAAACGTTGTTGGTCTAAAGCTGCGTTAGAGGCTACAGCGACAGGTTTGGAGGAGAAACTTGGGAAGTTAGCTCCAGCTTATGCTACTGCTGGTTCTATTTCTCAGTATTTTGTTCAGAGGTTCGGTTTTGAAAAGAACTGTGTGGTTGTGCAGTGGTCGGGAGATAATCCTAATAGCTTGGCAGGTCTAACTCTTAGTACTCCTGGAGATCTGGCGATCAGTCTTGGAACCAGTGACACGGTATTTGGGATTACCAAAGAACTTCAACCCAGTCTTGAGGGTCATGTGTTACCTAATCCTGTGGACCCTGAGAGTTATATGGTGATGTTGGTTTACAAGAATGCTTCTCTCACCCGGGAAGAAATTCGTGACCGTTGTGCTGAGGGATCTTGGGATGTTTTTAATAAGTATTTGCAGCAAACACAGCCACTAAACAATGGGAAACTCGGCTTCTACTACACTGAAAATGAAATTCTGCCCCCACTTCCCGTTGGCTCTCATCGTTACATTCTTGAGAACTTCTCTGGTGAGTCTCTTGAGGGTGTGAAGGAACAAGAGGTCGGTGAGTTCGACCCTCCCTCAGAGGTTAGGGCATTGATTGAAGGTCAGTTTCTTTCAAAGCGGGCTCATACTGAGAGATTTGGTATGCCCTCCCCTCCCCTCCGAATAATAGCAACCGGAGGTGCATCTGCTAACGAGAATATCTTGAGTCTGATCTCAGCAATCTTCGGATGTGATGTATATACTGTCCAAAGGCCTGATTCAGCATCACTTGGAGCTGCACTAAGAGCTGCTCATGGCTGGCTCTGCAACAAAAAAGGAAGCTTTGTACCAATCTCAAATCTCTACGAAGGGAAATTGGAAACAACATCTCTGAACTGCAAGCTCAAGGTAAAAGCAGGAGACGCGAACATTGCTTCCACCTATGGTTTGTTGATGAAGAAGAGGATGGAAATAGAGAACAAGCTTGTGGAGAAGTTAGGCCACTTCTGA

Protein Analysis

558

Amino Acids

61.29

Weight (kDa)

5.38

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FGGY_N PF00370 12 - 288 4.6e-18 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C PF02782 299 - 496 3.3e-27 FGGY family of carbohydrate kinases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 857
AccBSI CCGCTC 1 cut(s) 517
AccII CGCG 1 cut(s) 1592
AciI CCGC 5 cut(s) 5, 294, 517, 530, 1306
AclI AACGTT 1 cut(s) 688
AclWI GGATC 2 cut(s) 15, 1078
AcsI RAATTY 3 cut(s) 667, 1047, 1155
AcyI GRCGYC 1 cut(s) 611
AfaI GTAC 3 cut(s) 433, 883, 1515
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 6 cut(s) 360, 373, 815, 950, 1286, 1302
AjnI CCWGG 1 cut(s) 886
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AleI CACNNNNGTG 1 cut(s) 309
AloI GAACNNNNNNTCC 2 cut(s) 1586, 1618
Alw21I GWGCWC 1 cut(s) 578
Alw26I GTCTC 3 cut(s) 162, 1221, 1581
AlwI GGATC 2 cut(s) 15, 1078
Ama87I CYCGRG 1 cut(s) 1038
AoxI GGCC 2 cut(s) 1439, 1666
ApeKI GCWGC 6 cut(s) 291, 656, 704, 1099, 1463, 1475
ApoI RAATTY 3 cut(s) 667, 1047, 1155
ArsI GACNNNNNNTTYG 2 cut(s) 911, 943
Asp700I GAANNNNTTC 2 cut(s) 114, 1047
AspS9I GGNCC 2 cut(s) 527, 988
AsuC2I CCSGG 2 cut(s) 1039, 1040
AsuHPI GGTGA 4 cut(s) 1018, 1027, 1223, 1259
AsuII TTCGAA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 1038
AvaII GGWCC 2 cut(s) 527, 988
BanII GRGCYC 1 cut(s) 1312
BauI CACGAG 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 578
BbvCI CCTCAGC 1 cut(s) 1065
BbvI GCAGC 6 cut(s) 303, 643, 691, 1111, 1450, 1462
BccI CCATC 3 cut(s) 415, 667, 1627
BciT130I CCWGG 1 cut(s) 888
BcnI CCSGG 2 cut(s) 1039, 1040
BcoDI GTCTC 3 cut(s) 162, 1221, 1581
BfmI CTRYAG 1 cut(s) 717
BfuAI ACCTGC 1 cut(s) 857
BglII AGATCT 1 cut(s) 892
BisI GCNGC 6 cut(s) 292, 657, 705, 1100, 1464, 1476
BlsI GCNGC 6 cut(s) 293, 658, 706, 1101, 1465, 1477
BmcAI AGTACT 2 cut(s) 433, 883
Bme1390I CCNGG 3 cut(s) 888, 1039, 1040
Bme18I GGWCC 2 cut(s) 527, 988
BmeT110I CYCGRG 1 cut(s) 1038
BmgT120I GGNCC 2 cut(s) 527, 988
BmiI GGNNCC 2 cut(s) 913, 990
BmrFI CCNGG 3 cut(s) 888, 1039, 1040
BmrI ACTGGG 2 cut(s) 52, 948
BmsI GCATC 3 cut(s) 643, 1379, 1460
BmuI ACTGGG 2 cut(s) 52, 948
BplI GAGNNNNNCTC 2 cut(s) 1190, 1222
BpmI CTGGAG 3 cut(s) 221, 741, 909
Bpu10I CCTNAGC 1 cut(s) 1065
Bpu14I TTCGAA 1 cut(s) 86
BpuEI CTTGAG 5 cut(s) 980, 1217, 1241, 1411, 1556
BpuMI CCSGG 2 cut(s) 1039, 1040
BsaBI GATNNNNATC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 611
BsaJI CCNNGG 2 cut(s) 37, 1038
BsaWI WCCGGW 1 cut(s) 1361
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse1I ACTGG 5 cut(s) 58, 502, 529, 915, 954
Bse3DI GCAATG 3 cut(s) 437, 449, 1596
Bse8I GATNNNNATC 1 cut(s) 129
BseBI CCWGG 1 cut(s) 888
BseDI CCNNGG 2 cut(s) 37, 1038
BseGI GGATG 5 cut(s) 426, 669, 1084, 1421, 1638
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMI GCAATG 3 cut(s) 437, 449, 1596
BseMII CTCAG 8 cut(s) 327, 569, 800, 984, 1056, 1278, 1308, 1416
BseNI ACTGG 5 cut(s) 58, 502, 529, 915, 954
BseRI GAGGAG 1 cut(s) 749
BseXI GCAGC 6 cut(s) 303, 643, 691, 1111, 1450, 1462
BseYI CCCAGC 1 cut(s) 659
BsgI GTGCAG 2 cut(s) 854, 1449
Bsh1236I CGCG 1 cut(s) 1592
BshFI GGCC 2 cut(s) 1441, 1668
BsiHKAI GWGCWC 1 cut(s) 578
BsiHKCI CYCGRG 1 cut(s) 1038
BsiSI CCGG 2 cut(s) 1039, 1362
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 3 cut(s) 162, 1221, 1581
BsmBI CGTCTC 1 cut(s) 1581
BsmI GAATGC 2 cut(s) 466, 1030
BsnI GGCC 2 cut(s) 1441, 1668
BsoBI CYCGRG 1 cut(s) 1038
Bsp119I TTCGAA 1 cut(s) 86
Bsp1286I GDGCHC 2 cut(s) 578, 1312
BspACI CCGC 5 cut(s) 5, 294, 517, 530, 1306
BspANI GGCC 2 cut(s) 1441, 1668
BspCNI CTCAG 8 cut(s) 328, 568, 799, 985, 1057, 1277, 1309, 1415
BspFNI CGCG 1 cut(s) 1592
BspLI GGNNCC 2 cut(s) 913, 990
BspMI ACCTGC 1 cut(s) 857
BspPI GGATC 2 cut(s) 15, 1078
BspT104I TTCGAA 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 517
BsrDI GCAATG 3 cut(s) 437, 449, 1596
BsrI ACTGG 5 cut(s) 58, 502, 529, 915, 954
BssECI CCNNGG 2 cut(s) 37, 1038
BssNI GRCGYC 1 cut(s) 611
BssSI CACGAG 1 cut(s) 504
Bst2BI CACGAG 1 cut(s) 504
Bst2UI CCWGG 1 cut(s) 888
Bst4CI ACNGT 7 cut(s) 76, 178, 308, 824, 925, 1058, 1432
Bst6I CTCTTC 3 cut(s) 21, 38, 1622
BstACI GRCGYC 1 cut(s) 611
BstBI TTCGAA 1 cut(s) 86
BstC8I GCNNGC 4 cut(s) 296, 1308, 1487, 1568
BstF5I GGATG 5 cut(s) 426, 669, 1084, 1421, 1638
BstFNI CGCG 1 cut(s) 1592
BstMAI GTCTC 3 cut(s) 162, 1221, 1581
BstMWI GCNNNNNNNGC 7 cut(s) 48, 713, 1108, 1472, 1491, 1589, 1598
BstNI CCWGG 1 cut(s) 888
BstSCI CCNGG 3 cut(s) 886, 1037, 1038
BstSFI CTRYAG 1 cut(s) 717
BstUI CGCG 1 cut(s) 1592
BstV1I GCAGC 6 cut(s) 303, 643, 691, 1111, 1450, 1462
BstX2I RGATCY 3 cut(s) 7, 892, 1070
BstYI RGATCY 3 cut(s) 7, 892, 1070
BsuRI GGCC 2 cut(s) 1441, 1668
BtsCI GGATG 5 cut(s) 426, 669, 1084, 1421, 1638
BtsI GCAGTG 1 cut(s) 842
BtsIMutI CAGTG 4 cut(s) 495, 842, 922, 1143
BveI ACCTGC 1 cut(s) 857
Cac8I GCNNGC 4 cut(s) 296, 1308, 1487, 1568
Cfr13I GGNCC 2 cut(s) 527, 988
Cfr9I CCCGGG 1 cut(s) 1038
CseI GACGC 2 cut(s) 600, 1598
Csp6I GTAC 3 cut(s) 432, 882, 1514
CviAII CATG 3 cut(s) 208, 968, 1481
CviQI GTAC 3 cut(s) 432, 882, 1514
Eam1104I CTCTTC 3 cut(s) 21, 38, 1622
EarI CTCTTC 3 cut(s) 21, 38, 1622
EciI GGCGGA 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 1441
Eco24I GRGCYC 1 cut(s) 1312
Eco47I GGWCC 2 cut(s) 527, 988
Eco88I CYCGRG 1 cut(s) 1038
EcoRII CCWGG 1 cut(s) 886
EcoT38I GRGCYC 1 cut(s) 1312
Esp3I CGTCTC 1 cut(s) 1581
FaeI CATG 3 cut(s) 211, 971, 1484
FatI CATG 3 cut(s) 207, 967, 1480
FauI CCCGC 2 cut(s) 287, 1299
Fnu4HI GCNGC 6 cut(s) 292, 657, 705, 1100, 1464, 1476
FokI GGATG 5 cut(s) 433, 676, 1091, 1428, 1645
FriOI GRGCYC 1 cut(s) 1312
Fsp4HI GCNGC 6 cut(s) 292, 657, 705, 1100, 1464, 1476
GluI GCNGC 6 cut(s) 292, 657, 705, 1100, 1464, 1476
GsaI CCCAGC 1 cut(s) 663
GsuI CTGGAG 3 cut(s) 221, 741, 909
HaeIII GGCC 2 cut(s) 1441, 1668
HapII CCGG 2 cut(s) 1039, 1362
HgaI GACGC 2 cut(s) 600, 1598
Hin1I GRCGYC 1 cut(s) 611
Hin1II CATG 3 cut(s) 211, 971, 1484
HindIII AAGCTT 3 cut(s) 542, 1507, 1649
HpaII CCGG 2 cut(s) 1039, 1362
HphI GGTGA 4 cut(s) 1018, 1027, 1223, 1259
Hpy166II GTNNAC 5 cut(s) 163, 181, 522, 988, 1018
Hpy188I TCNGA 9 cut(s) 130, 337, 801, 1267, 1349, 1398, 1415, 1560, 1676
Hpy188III TCNNGA 8 cut(s) 23, 238, 843, 959, 1052, 1196, 1220, 1390
Hpy8I GTNNAC 5 cut(s) 163, 181, 522, 988, 1018
HpyAV CCTTC 3 cut(s) 1225, 1280, 1529
HpyCH4III ACNGT 7 cut(s) 76, 178, 308, 824, 925, 1058, 1432
HpyCH4IV ACGT 1 cut(s) 688
HpyCH4V TGCA 7 cut(s) 442, 835, 1099, 1370, 1466, 1494, 1566
HpyF10VI GCNNNNNNNGC 7 cut(s) 48, 713, 1108, 1472, 1491, 1589, 1598
HpySE526I ACGT 1 cut(s) 688
Hsp92I GRCGYC 1 cut(s) 611
Hsp92II CATG 3 cut(s) 211, 971, 1484
LmnI GCTCC 3 cut(s) 473, 760, 1460
Lsp1109I GCAGC 6 cut(s) 303, 643, 691, 1111, 1450, 1462
LweI GCATC 3 cut(s) 643, 1379, 1460
MaeII ACGT 1 cut(s) 688
MaeIII GTNAC 4 cut(s) 917, 972, 1052, 1187
MbiI CCGCTC 1 cut(s) 517
MboII GAAGA 9 cut(s) 8, 25, 125, 198, 502, 1055, 1402, 1636, 1639
MflI RGATCY 3 cut(s) 7, 892, 1070
MhlI GDGCHC 2 cut(s) 578, 1312
MluCI AATT 5 cut(s) 256, 667, 1047, 1155, 1541
MlyI GAGTC 3 cut(s) 547, 1223, 1402
MmeI TCCRAC 3 cut(s) 60, 224, 604
MroXI GAANNNNTTC 2 cut(s) 114, 1047
MseI TTAA 2 cut(s) 402, 1086
MslI CAYNNNNRTG 2 cut(s) 309, 442
MspA1I CMGCKG 1 cut(s) 294
MspI CCGG 2 cut(s) 1039, 1362
MspR9I CCNGG 3 cut(s) 888, 1039, 1040
Mva1269I GAATGC 2 cut(s) 466, 1030
MvaI CCWGG 1 cut(s) 888
MvnI CGCG 1 cut(s) 1592
MwoI GCNNNNNNNGC 7 cut(s) 48, 713, 1108, 1472, 1491, 1589, 1598
NciI CCSGG 2 cut(s) 1039, 1040
NlaIII CATG 3 cut(s) 211, 971, 1484
NlaIV GGNNCC 2 cut(s) 913, 990
NmeAIII GCCGAG 2 cut(s) 18, 1110
NmuCI GTSAC 2 cut(s) 917, 1052
NspV TTCGAA 1 cut(s) 86
OliI CACNNNNGTG 1 cut(s) 309
PceI AGGCCT 1 cut(s) 1441
PcsI WCGNNNNNNNCGW 4 cut(s) 120, 189, 258, 1251
PctI GAATGC 2 cut(s) 466, 1030
PdmI GAANNNNTTC 2 cut(s) 114, 1047
PfeI GAWTC 7 cut(s) 26, 83, 125, 189, 356, 407, 1445
PfoI TCCNGGA 1 cut(s) 886
PkrI GCNGC 6 cut(s) 293, 658, 706, 1101, 1465, 1477
PleI GAGTC 3 cut(s) 547, 1222, 1401
PpsI GAGTC 3 cut(s) 547, 1222, 1401
Psp1406I AACGTT 1 cut(s) 688
Psp6I CCWGG 1 cut(s) 886
PspFI CCCAGC 1 cut(s) 659
PspGI CCWGG 1 cut(s) 886
PspN4I GGNNCC 2 cut(s) 913, 990
PspPI GGNCC 2 cut(s) 527, 988
PsuI RGATCY 3 cut(s) 7, 892, 1070
RsaI GTAC 3 cut(s) 433, 883, 1515
RsaNI GTAC 3 cut(s) 432, 882, 1514
RseI CAYNNNNRTG 2 cut(s) 309, 442
SaqAI TTAA 2 cut(s) 402, 1086
SatI GCNGC 6 cut(s) 292, 657, 705, 1100, 1464, 1476
Sau96I GGNCC 2 cut(s) 527, 988
ScaI AGTACT 2 cut(s) 433, 883
SchI GAGTC 3 cut(s) 547, 1223, 1402
ScrFI CCNGG 3 cut(s) 888, 1039, 1040
SduI GDGCHC 2 cut(s) 578, 1312
SfaNI GCATC 3 cut(s) 643, 1379, 1460
SfcI CTRYAG 1 cut(s) 717
SfuI TTCGAA 1 cut(s) 86
SinI GGWCC 2 cut(s) 527, 988
SmaI CCCGGG 1 cut(s) 1040
SmiMI CAYNNNNRTG 2 cut(s) 309, 442
SmlI CTYRAG 5 cut(s) 959, 1196, 1220, 1390, 1571
SmoI CTYRAG 5 cut(s) 959, 1196, 1220, 1390, 1571
Sse9I AATT 5 cut(s) 256, 667, 1047, 1155, 1541
SseBI AGGCCT 1 cut(s) 1441
SsiI CCGC 5 cut(s) 5, 294, 517, 530, 1306
StuI AGGCCT 1 cut(s) 1441
StyD4I CCNGG 3 cut(s) 886, 1037, 1038
TaaI ACNGT 7 cut(s) 76, 178, 308, 824, 925, 1058, 1432
TaiI ACGT 1 cut(s) 691
TaqI TCGA 8 cut(s) 45, 86, 123, 216, 261, 384, 488, 1254
TasI AATT 5 cut(s) 256, 667, 1047, 1155, 1541
TatI WGTACW 2 cut(s) 431, 881
TfiI GAWTC 7 cut(s) 26, 83, 125, 189, 356, 407, 1445
Tru1I TTAA 2 cut(s) 402, 1086
Tru9I TTAA 2 cut(s) 402, 1086
TscAI CASTG 4 cut(s) 502, 842, 922, 1150
TseFI GTSAC 2 cut(s) 917, 1052
TseI GCWGC 6 cut(s) 291, 656, 704, 1099, 1463, 1475
Tsp45I GTSAC 2 cut(s) 917, 1052
TspDTI ATGAA 6 cut(s) 80, 107, 660, 680, 1167, 1637
TspGWI ACGGA 3 cut(s) 198, 553, 593
TspMI CCCGGG 1 cut(s) 1038
TspRI CASTG 4 cut(s) 502, 842, 922, 1150
VpaK11BI GGWCC 2 cut(s) 527, 988
XapI RAATTY 3 cut(s) 667, 1047, 1155
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
XmaI CCCGGG 1 cut(s) 1038
XmnI GAANNNNTTC 2 cut(s) 114, 1047
ZrmI AGTACT 2 cut(s) 433, 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.