Rorug07G0273100

Xylulose kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002095
Physical Location & Seq
Reverse (-)
25907655 .. 25917206
9552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0273100.1

Sequence Viewer

Length: 807 bp
ATGCTCTTGTTCTTGGAAGAGAGATCTCCGGTCTTGAACGAGCTCGTCAAGTACTATAGGGATACTGGTATTGGGATGACGAAGGAGGAACTCATTGACTGCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTGACGGCTCTGAAGGATCTTGGTGCAGACAACGGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCTTTTCTTGTTGCTGACAAGCAGGTGCAGTTTTGGTTTCACACTTTTTTTAGTCTTATGCCTTGTAAAAACTATCTGCTCATGGTTGAGCTTCTAGTCTGGATGACTGTCTTGAGCAGTAGCTCTTATGTGATTAGGGTAGAAACTGATCCAGAAAATATCATTAGCCGTGGGACGCAGATCAAACTATATTTAAGGCCTGATCACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGGGTTGATGTTAAACAAGGAAGGGTATGCTTCTATAGGAGGTGGTTCACCCTTGCGTAAGATGACAGATGAGCAGGCAAATGCACTGAAAATGGCTTTGGAATCAAAGGACATGCCGGTGAATGTCTATGTGGGAATGCGGTACTGGTTCCCGTTCACTGAGGAAGCAGTTCATCAACTTCGGGACTCAACAAATACATGTAACCCTTTATATGACTGCAATTGCTTCCCAGTCCACTTTGGTGCAAAAACCTATTGTCAAGGTCTTACCAGAAATGGCCTGGAGGTTAGGCTATCAGGGTCAGGAGTAACAGGGAGCCCTCCTACAACTGTCACCCACAATGTTGAATATTGA

Protein Analysis

268

Amino Acids

30.11

Weight (kDa)

5.77

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferrochelatase PF00762 157 - 214 7.4e-15 Ferrochelatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 220
Acc36I ACCTGC 1 cut(s) 220
Acc65I GGTACC 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 107
AccB7I CCANNNNNTGG 1 cut(s) 451
AciI CCGC 1 cut(s) 592
AclWI GGATC 4 cut(s) 162, 350, 436, 449
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 4 cut(s) 53, 109, 127, 596
AfiI CCNNNNNNNGG 1 cut(s) 451
AflIII ACRYGT 1 cut(s) 650
AgsI TTSAA 3 cut(s) 37, 132, 800
AjnI CCWGG 1 cut(s) 732
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AleI CACNNNNGTG 1 cut(s) 693
AluBI AGCT 3 cut(s) 43, 298, 330
AluI AGCT 3 cut(s) 43, 298, 330
Alw21I GWGCWC 1 cut(s) 45
AlwI GGATC 4 cut(s) 162, 350, 436, 449
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 2 cut(s) 404, 730
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 621
Asp718I GGTACC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 3 cut(s) 492, 583, 778
BamHI GGATCC 1 cut(s) 441
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 2 cut(s) 45, 773
Bbv12I GWGCWC 1 cut(s) 45
BceAI ACGGC 2 cut(s) 159, 360
BciT130I CCWGG 1 cut(s) 734
BciVI GTATCC 1 cut(s) 55
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 439
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 2 cut(s) 55, 486
BfuAI ACCTGC 1 cut(s) 220
BfuI GTATCC 1 cut(s) 55
BglII AGATCT 1 cut(s) 23
BmcAI AGTACT 1 cut(s) 53
Bme1390I CCNGG 2 cut(s) 439, 734
BmiI GGNNCC 4 cut(s) 109, 443, 602, 770
BmrFI CCNGG 2 cut(s) 439, 734
BmrI ACTGGG 1 cut(s) 677
BmuI ACTGGG 1 cut(s) 677
BpmI CTGGAG 1 cut(s) 755
BpuEI CTTGAG 1 cut(s) 340
BpuMI CCSGG 1 cut(s) 439
BsaJI CCNNGG 2 cut(s) 103, 376
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse118I RCCGGY 1 cut(s) 568
Bse1I ACTGG 3 cut(s) 70, 602, 683
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 734
BseDI CCNNGG 2 cut(s) 103, 376
BseGI GGATG 2 cut(s) 81, 315
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 3 cut(s) 131, 441, 603
BseNI ACTGG 3 cut(s) 70, 602, 683
BsgI GTGCAG 2 cut(s) 183, 254
BshFI GGCC 2 cut(s) 406, 732
BshNI GGYRCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 3 cut(s) 29, 439, 569
BslFI GGGAC 2 cut(s) 394, 650
BslI CCNNNNNNNGG 1 cut(s) 451
BsmFI GGGAC 2 cut(s) 394, 650
BsmI GAATGC 1 cut(s) 594
BsnI GGCC 2 cut(s) 406, 732
Bsp1286I GDGCHC 2 cut(s) 45, 773
Bsp143I GATC 6 cut(s) 23, 154, 355, 387, 409, 441
BspACI CCGC 1 cut(s) 592
BspANI GGCC 2 cut(s) 406, 732
BspCNI CTCAG 3 cut(s) 130, 440, 604
BspLI GGNNCC 4 cut(s) 109, 443, 602, 770
BspMI ACCTGC 1 cut(s) 220
BspPI GGATC 4 cut(s) 162, 350, 436, 449
BspT107I GGYRCC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 568
BsrI ACTGG 3 cut(s) 70, 602, 683
BssAI RCCGGY 1 cut(s) 568
BssECI CCNNGG 2 cut(s) 103, 376
BssMI GATC 6 cut(s) 23, 154, 355, 387, 409, 441
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 734
Bst4CI ACNGT 3 cut(s) 173, 316, 784
Bst6I CTCTTC 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 435, 528
BstDEI CTNAG 3 cut(s) 117, 427, 612
BstDSI CCRYGG 1 cut(s) 376
BstF5I GGATG 2 cut(s) 81, 315
BstKTI GATC 6 cut(s) 26, 157, 358, 390, 412, 444
BstMBI GATC 6 cut(s) 23, 154, 355, 387, 409, 441
BstNI CCWGG 1 cut(s) 734
BstNSI RCATGY 2 cut(s) 568, 654
BstSCI CCNGG 2 cut(s) 437, 732
BstSFI CTRYAG 2 cut(s) 55, 486
BstX2I RGATCY 3 cut(s) 23, 154, 441
BstYI RGATCY 3 cut(s) 23, 154, 441
BsuI GTATCC 1 cut(s) 55
BsuRI GGCC 2 cut(s) 406, 732
BtgI CCRYGG 1 cut(s) 376
BtsCI GGATG 2 cut(s) 81, 315
BtsIMutI CAGTG 2 cut(s) 536, 609
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 2 cut(s) 435, 528
CaiI CAGNNNCTG 1 cut(s) 434
Cfr10I RCCGGY 1 cut(s) 568
CseI GACGC 1 cut(s) 391
Csp6I GTAC 4 cut(s) 52, 108, 126, 595
CviAII CATG 3 cut(s) 289, 565, 651
CviQI GTAC 4 cut(s) 52, 108, 126, 595
DdeI CTNAG 3 cut(s) 117, 427, 612
DpnI GATC 6 cut(s) 25, 156, 357, 389, 411, 443
DpnII GATC 6 cut(s) 23, 154, 355, 387, 409, 441
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 406
Eco24I GRGCYC 2 cut(s) 45, 773
Eco53kI GAGCTC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 732
EcoT14I CCWWGG 1 cut(s) 103
EcoT38I GRGCYC 2 cut(s) 45, 773
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 3 cut(s) 292, 568, 654
FaqI GGGAC 2 cut(s) 394, 650
FatI CATG 3 cut(s) 288, 564, 650
FbaI TGATCA 1 cut(s) 409
FokI GGATG 2 cut(s) 88, 322
FriOI GRGCYC 2 cut(s) 45, 773
FspBI CTAG 1 cut(s) 302
GsuI CTGGAG 1 cut(s) 755
HaeIII GGCC 2 cut(s) 406, 732
HapII CCGG 3 cut(s) 29, 439, 569
HgaI GACGC 1 cut(s) 391
Hin1II CATG 3 cut(s) 292, 568, 654
HinfI GANTC 2 cut(s) 554, 638
HpaII CCGG 3 cut(s) 29, 439, 569
HphI GGTGA 3 cut(s) 492, 583, 778
Hpy166II GTNNAC 3 cut(s) 500, 609, 688
Hpy188I TCNGA 3 cut(s) 120, 150, 430
Hpy188III TCNNGA 8 cut(s) 34, 139, 307, 319, 359, 445, 635, 756
Hpy8I GTNNAC 3 cut(s) 500, 609, 688
HpyAV CCTTC 3 cut(s) 76, 145, 467
HpyCH4III ACNGT 3 cut(s) 173, 316, 784
HpyCH4V TGCA 5 cut(s) 164, 235, 536, 672, 698
HpyF3I CTNAG 3 cut(s) 117, 427, 612
Hsp92II CATG 3 cut(s) 292, 568, 654
KpnI GGTACC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 6 cut(s) 23, 154, 355, 387, 409, 441
LmnI GCTCC 1 cut(s) 768
MaeI CTAG 1 cut(s) 302
MaeIII GTNAC 3 cut(s) 653, 760, 784
MalI GATC 6 cut(s) 25, 156, 357, 389, 411, 443
MboI GATC 6 cut(s) 23, 154, 355, 387, 409, 441
MboII GAAGA 1 cut(s) 29
MfeI CAATTG 1 cut(s) 673
MflI RGATCY 3 cut(s) 23, 154, 441
MhlI GDGCHC 2 cut(s) 45, 773
MluCI AATT 3 cut(s) 134, 185, 673
MlyI GAGTC 1 cut(s) 632
MnlI CCTC 5 cut(s) 79, 485, 607, 730, 783
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 2 cut(s) 401, 464
MslI CAYNNNNRTG 3 cut(s) 417, 569, 693
MspI CCGG 3 cut(s) 29, 439, 569
MspR9I CCNGG 2 cut(s) 439, 734
MunI CAATTG 1 cut(s) 673
Mva1269I GAATGC 1 cut(s) 594
MvaI CCWGG 1 cut(s) 734
NciI CCSGG 1 cut(s) 439
NdeII GATC 6 cut(s) 23, 154, 355, 387, 409, 441
NlaIII CATG 3 cut(s) 292, 568, 654
NlaIV GGNNCC 4 cut(s) 109, 443, 602, 770
NmuCI GTSAC 1 cut(s) 784
NspI RCATGY 2 cut(s) 568, 654
OliI CACNNNNGTG 1 cut(s) 693
PaqCI CACCTGC 1 cut(s) 220
PceI AGGCCT 1 cut(s) 406
PciI ACATGT 1 cut(s) 650
PctI GAATGC 1 cut(s) 594
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 1 cut(s) 554
PflMI CCANNNNNTGG 1 cut(s) 451
PleI GAGTC 1 cut(s) 632
PpsI GAGTC 1 cut(s) 632
PscI ACATGT 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 732
PspGI CCWGG 1 cut(s) 732
PspN4I GGNNCC 4 cut(s) 109, 443, 602, 770
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 3 cut(s) 23, 154, 441
RsaI GTAC 4 cut(s) 53, 109, 127, 596
RsaNI GTAC 4 cut(s) 52, 108, 126, 595
RseI CAYNNNNRTG 3 cut(s) 417, 569, 693
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 401, 464
Sau3AI GATC 6 cut(s) 23, 154, 355, 387, 409, 441
ScaI AGTACT 1 cut(s) 53
SchI GAGTC 1 cut(s) 632
ScrFI CCNGG 2 cut(s) 439, 734
SduI GDGCHC 2 cut(s) 45, 773
SetI ASST 8 cut(s) 45, 234, 300, 332, 496, 707, 718, 741
SfcI CTRYAG 2 cut(s) 55, 486
SmiMI CAYNNNNRTG 3 cut(s) 417, 569, 693
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 3 cut(s) 134, 185, 673
SseBI AGGCCT 1 cut(s) 406
SsiI CCGC 1 cut(s) 592
SspI AATATT 1 cut(s) 803
SspMI CTAG 1 cut(s) 302
SstI GAGCTC 1 cut(s) 45
StuI AGGCCT 1 cut(s) 406
StyD4I CCNGG 2 cut(s) 437, 732
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 3 cut(s) 173, 316, 784
TasI AATT 3 cut(s) 134, 185, 673
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 1 cut(s) 554
Tru1I TTAA 2 cut(s) 401, 464
Tru9I TTAA 2 cut(s) 401, 464
TscAI CASTG 2 cut(s) 543, 616
TseFI GTSAC 1 cut(s) 784
Tsp45I GTSAC 1 cut(s) 784
TspDTI ATGAA 1 cut(s) 614
TspRI CASTG 2 cut(s) 543, 616
Van91I CCANNNNNTGG 1 cut(s) 451
XapI RAATTY 1 cut(s) 134
XceI RCATGY 2 cut(s) 568, 654
XcmI CCANNNNNNNNNTGG 1 cut(s) 730
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 1 cut(s) 302
ZrmI AGTACT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.