Rmu_sc0003113.1_g000011

Xylulose kinase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003113.1
Physical Location & Seq
Forward (+)
56495 .. 60300
3806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003113.1_g000011.1.cds

Sequence Viewer

Length: 1416 bp
atgtggatagaggctctagatctcgtacttgataaactttcaaaatcaaatttaaattttgagaagattactgctgtttctggtagtgggcagcaacatgggagtgtctactggaagactgggagttcttcaatattatcatctttggaccccaagaagccattggtgcatcagttcaatgatgctttctctgttaaggaatcgccggtgtggatggacagcagcaccaccgcacagtgcaaagaattagagaatgctgttggtggagcattggagttatccaaactgacaggatcacgcgcttatgaaaggttcactggaccacagatcaagaaaatattcgagacacatcctgaagtctataacaatactgagaggatctcccttgttagttctttcatggcatctcttctaattgggggatatgcatctattgatgaaactgatggtgcagggatgaacttgatggatataaagaaaagggcctggtctgaaatagtattagaggctactgcccctggcctggcagaaaaacttggaaaactggcccctgcacatgctgtcgctggtcgtattgccccctatttcgcggagagatataagttcaacaagaattgcttggttattcagtggtcaggagacaaccctaacagccttgcaggcttaacactaagtacccctggggatcttggattgagtcttggcacaagtgacactgtctttgggattactgatgatcctcatcctgggttggagggacatgttttccctaatcctgttgacataaaaggctacatggtaatgttgtgttacaagaatgggtctctaactcgtgaagatattcgcaaccgccatgcgcgtggttgttgggaagatttcagtgggaaccttacacatacaccagtactaaatgttggttaccattggtacgttctcgaaaatttcacgggtgatactttggagggtgtgagtgtacgtgaagagcagcaggaatttggccgttctgctgagtgccgagcagtaatagagggacagttcctgtcaatgcgaggtcatgcagaaagatttggaatgccttaccctccaaaacgaataatagctactggaggtgggtctgtaaatcgccacatcctgggcatagcagcaaatatttttggatgtgaggtctacacagttgaaagacctgattcggcttctctaggagctgcattgagggctgctcacggttgggtatgcagcaaaaagggtagttttgtgcccttctcctgcatgtacggggataagattcagaagacatctctcaaatgcagactagcggcgattccagagacacatttggtccccaagtatgggttgatgatgaagaagagacttgaaatagagaacctcctagttcaaaaactgggacgattctaa

Protein Analysis

471

Amino Acids

51.72

Weight (kDa)

7.61

Isoelectric Point (pI)

31.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1132
AccI GTMKAC 2 cut(s) 108, 1167
AccII CGCG 3 cut(s) 300, 590, 859
AciI CCGC 4 cut(s) 231, 590, 850, 1316
AclWI GGATC 4 cut(s) 301, 386, 693, 731
AcoI YGGCCR 1 cut(s) 997
AcsI RAATTY 4 cut(s) 49, 55, 940, 992
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 6 cut(s) 27, 676, 906, 929, 975, 1274
AfiI CCNNNNNNNGG 5 cut(s) 523, 746, 1132, 1349, 1350
AflIII ACRYGT 1 cut(s) 760
AgsI TTSAA 7 cut(s) 42, 132, 178, 607, 1178, 1376, 1397
AjnI CCWGG 6 cut(s) 485, 517, 522, 679, 745, 1131
AluBI AGCT 2 cut(s) 1100, 1205
AluI AGCT 2 cut(s) 1100, 1205
Alw26I GTCTC 5 cut(s) 338, 633, 828, 1322, 1363
AlwI GGATC 4 cut(s) 301, 386, 693, 731
AlwNI CAGNNNCTG 1 cut(s) 1039
AoxI GGCC 4 cut(s) 483, 520, 546, 997
ApeKI GCWGC 7 cut(s) 91, 222, 985, 1142, 1205, 1217, 1236
ApoI RAATTY 4 cut(s) 49, 55, 940, 992
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
Asp700I GAANNNNTTC 2 cut(s) 338, 840
AspLEI GCGC 2 cut(s) 302, 859
AspS9I GGNCC 5 cut(s) 148, 320, 483, 547, 1339
AsuHPI GGTGA 1 cut(s) 962
AvaII GGWCC 3 cut(s) 148, 320, 1339
BaeGI GKGCMC 1 cut(s) 1260
BauI CACGAG 1 cut(s) 831
BbsI GAAGAC 2 cut(s) 122, 1298
BbvI GCAGC 7 cut(s) 103, 234, 997, 1154, 1192, 1204, 1248
BccI CCATC 3 cut(s) 208, 440, 460
BceAI ACGGC 1 cut(s) 984
BciT130I CCWGG 6 cut(s) 487, 519, 524, 681, 747, 1133
BcoDI GTCTC 5 cut(s) 338, 633, 828, 1322, 1363
BfaI CTAG 4 cut(s) 17, 1199, 1313, 1391
BglI GCCNNNNNGGC 1 cut(s) 660
BglII AGATCT 1 cut(s) 19
BisI GCNGC 8 cut(s) 92, 223, 986, 1143, 1206, 1218, 1237, 1317
BlsI GCNGC 8 cut(s) 93, 224, 987, 1144, 1207, 1219, 1238, 1318
BmcAI AGTACT 1 cut(s) 906
Bme1390I CCNGG 6 cut(s) 487, 519, 524, 681, 747, 1133
Bme18I GGWCC 3 cut(s) 148, 320, 1339
BmgT120I GGNCC 5 cut(s) 148, 320, 483, 547, 1339
BmiI GGNNCC 4 cut(s) 150, 549, 887, 1341
BmrFI CCNGG 6 cut(s) 487, 519, 524, 681, 747, 1133
BmrI ACTGGG 2 cut(s) 129, 1412
BmsI GCATC 4 cut(s) 172, 178, 413, 437
BmuI ACTGGG 2 cut(s) 129, 1412
BpiI GAAGAC 2 cut(s) 122, 1298
BplI GAGNNNNNCTC 4 cut(s) 365, 397, 1204, 1236
BpmI CTGGAG 1 cut(s) 1125
BsaAI YACGTR 1 cut(s) 977
BsaBI GATNNNNATC 2 cut(s) 427, 741
BsaI GGTCTC 1 cut(s) 828
BsaJI CCNNGG 5 cut(s) 517, 679, 680, 746, 1132
Bsc4I CCNNNNNNNGG 5 cut(s) 523, 746, 1132, 1349, 1350
Bse118I RCCGGY 1 cut(s) 205
Bse1I ACTGG 7 cut(s) 116, 124, 322, 549, 902, 1108, 1407
Bse8I GATNNNNATC 2 cut(s) 427, 741
BseBI CCWGG 6 cut(s) 487, 519, 524, 681, 747, 1133
BseDI CCNNGG 5 cut(s) 517, 679, 680, 746, 1132
BseGI GGATG 6 cut(s) 219, 349, 462, 742, 1128, 1163
BseJI GATNNNNATC 2 cut(s) 427, 741
BseLI CCNNNNNNNGG 5 cut(s) 523, 746, 1132, 1349, 1350
BseMII CTCAG 2 cut(s) 363, 999
BseNI ACTGG 7 cut(s) 116, 124, 322, 549, 902, 1108, 1407
BseSI GKGCMC 1 cut(s) 1260
BseXI GCAGC 7 cut(s) 103, 234, 997, 1154, 1192, 1204, 1248
BsgI GTGCAG 2 cut(s) 471, 537
Bsh1236I CGCG 3 cut(s) 300, 590, 859
BshFI GGCC 4 cut(s) 485, 522, 548, 999
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 3 cut(s) 771, 1044, 1325
BslI CCNNNNNNNGG 5 cut(s) 523, 746, 1132, 1349, 1350
BsmAI GTCTC 5 cut(s) 338, 633, 828, 1322, 1363
BsmFI GGGAC 3 cut(s) 771, 1044, 1325
BsmI GAATGC 2 cut(s) 259, 1077
BsnI GGCC 4 cut(s) 485, 522, 548, 999
Bso31I GGTCTC 1 cut(s) 828
Bsp1286I GDGCHC 1 cut(s) 1260
Bsp143I GATC 6 cut(s) 19, 293, 327, 378, 685, 736
BspACI CCGC 4 cut(s) 231, 590, 850, 1316
BspANI GGCC 4 cut(s) 485, 522, 548, 999
BspCNI CTCAG 2 cut(s) 364, 1000
BspFNI CGCG 3 cut(s) 300, 590, 859
BspLI GGNNCC 4 cut(s) 150, 549, 887, 1341
BspPI GGATC 4 cut(s) 301, 386, 693, 731
BspQI GCTCTTC 1 cut(s) 975
BspTNI GGTCTC 1 cut(s) 828
BsrFI RCCGGY 1 cut(s) 205
BsrI ACTGG 7 cut(s) 116, 124, 322, 549, 902, 1108, 1407
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 5 cut(s) 517, 679, 680, 746, 1132
BssMI GATC 6 cut(s) 19, 293, 327, 378, 685, 736
BssSI CACGAG 1 cut(s) 831
Bst2BI CACGAG 1 cut(s) 831
Bst2UI CCWGG 6 cut(s) 487, 519, 524, 681, 747, 1133
Bst4CI ACNGT 5 cut(s) 237, 718, 1035, 1174, 1226
Bst6I CTCTTC 3 cut(s) 414, 975, 1361
BstBAI YACGTR 1 cut(s) 977
BstC8I GCNNGC 1 cut(s) 661
BstDEI CTNAG 3 cut(s) 372, 671, 1008
BstEII GGTNACC 1 cut(s) 917
BstF5I GGATG 6 cut(s) 219, 349, 462, 742, 1128, 1163
BstFNI CGCG 3 cut(s) 300, 590, 859
BstHHI GCGC 2 cut(s) 302, 859
BstKTI GATC 6 cut(s) 22, 296, 330, 381, 688, 739
BstMAI GTCTC 5 cut(s) 338, 633, 828, 1322, 1363
BstMBI GATC 6 cut(s) 19, 293, 327, 378, 685, 736
BstMWI GCNNNNNNNGC 3 cut(s) 166, 660, 1214
BstNI CCWGG 6 cut(s) 487, 519, 524, 681, 747, 1133
BstNSI RCATGY 3 cut(s) 560, 764, 1273
BstPI GGTNACC 1 cut(s) 917
BstSCI CCNGG 6 cut(s) 485, 517, 522, 679, 745, 1131
BstSLI GKGCMC 1 cut(s) 1260
BstUI CGCG 3 cut(s) 300, 590, 859
BstV1I GCAGC 7 cut(s) 103, 234, 997, 1154, 1192, 1204, 1248
BstV2I GAAGAC 2 cut(s) 122, 1298
BstX2I RGATCY 3 cut(s) 19, 378, 685
BstXI CCANNNNNNTGG 1 cut(s) 860
BstYI RGATCY 3 cut(s) 19, 378, 685
BsuRI GGCC 4 cut(s) 485, 522, 548, 999
BtsCI GGATG 6 cut(s) 219, 349, 462, 742, 1128, 1163
BtsIMutI CAGTG 5 cut(s) 242, 315, 635, 714, 886
Cac8I GCNNGC 1 cut(s) 661
CaiI CAGNNNCTG 1 cut(s) 1039
CfoI GCGC 2 cut(s) 302, 859
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 5 cut(s) 148, 320, 483, 547, 1339
Csp6I GTAC 6 cut(s) 26, 675, 905, 928, 974, 1273
CviAII CATG 8 cut(s) 98, 400, 557, 761, 796, 854, 1055, 1270
CviQI GTAC 6 cut(s) 26, 675, 905, 928, 974, 1273
DdeI CTNAG 3 cut(s) 372, 671, 1008
DpnI GATC 6 cut(s) 21, 295, 329, 380, 687, 738
DpnII GATC 6 cut(s) 19, 293, 327, 378, 685, 736
DraI TTTAAA 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 997
Eam1104I CTCTTC 3 cut(s) 414, 975, 1361
EarI CTCTTC 3 cut(s) 414, 975, 1361
Eco31I GGTCTC 1 cut(s) 828
Eco47I GGWCC 3 cut(s) 148, 320, 1339
Eco57I CTGAAG 1 cut(s) 375
Eco91I GGTNACC 1 cut(s) 917
EcoO109I RGGNCCY 1 cut(s) 483
EcoO65I GGTNACC 1 cut(s) 917
EcoRII CCWGG 6 cut(s) 485, 517, 522, 679, 745, 1131
EcoT22I ATGCAT 1 cut(s) 430
FaeI CATG 8 cut(s) 101, 403, 560, 764, 799, 857, 1058, 1273
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FaqI GGGAC 3 cut(s) 771, 1044, 1325
FatI CATG 8 cut(s) 97, 399, 556, 760, 795, 853, 1054, 1269
FblI GTMKAC 2 cut(s) 108, 1167
Fnu4HI GCNGC 8 cut(s) 92, 223, 986, 1143, 1206, 1218, 1237, 1317
FokI GGATG 6 cut(s) 226, 336, 469, 729, 1115, 1170
Fsp4HI GCNGC 8 cut(s) 92, 223, 986, 1143, 1206, 1218, 1237, 1317
FspBI CTAG 4 cut(s) 17, 1199, 1313, 1391
GlaI GCGC 2 cut(s) 301, 858
GluI GCNGC 8 cut(s) 92, 223, 986, 1143, 1206, 1218, 1237, 1317
GsuI CTGGAG 1 cut(s) 1125
HaeIII GGCC 4 cut(s) 485, 522, 548, 999
HapII CCGG 1 cut(s) 206
HhaI GCGC 2 cut(s) 302, 859
Hin1II CATG 8 cut(s) 101, 403, 560, 764, 799, 857, 1058, 1273
Hin6I GCGC 2 cut(s) 300, 857
HinP1I GCGC 2 cut(s) 300, 857
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HinfI GANTC 6 cut(s) 200, 697, 1187, 1285, 1321, 1410
HpaII CCGG 1 cut(s) 206
HphI GGTGA 1 cut(s) 962
Hpy166II GTNNAC 5 cut(s) 109, 315, 781, 974, 1168
Hpy188I TCNGA 2 cut(s) 493, 1290
Hpy188III TCNNGA 8 cut(s) 17, 331, 343, 353, 636, 833, 935, 1325
Hpy8I GTNNAC 5 cut(s) 109, 315, 781, 974, 1168
HpyAV CCTTC 1 cut(s) 1270
HpyCH4III ACNGT 5 cut(s) 237, 718, 1035, 1174, 1226
HpyCH4IV ACGT 2 cut(s) 930, 976
HpyF10VI GCNNNNNNNGC 3 cut(s) 166, 660, 1214
HpyF3I CTNAG 3 cut(s) 372, 671, 1008
HpySE526I ACGT 2 cut(s) 930, 976
Hsp92II CATG 8 cut(s) 101, 403, 560, 764, 799, 857, 1058, 1273
HspAI GCGC 2 cut(s) 300, 857
Kzo9I GATC 6 cut(s) 19, 293, 327, 378, 685, 736
LguI GCTCTTC 1 cut(s) 975
LmnI GCTCC 2 cut(s) 266, 1202
Lsp1109I GCAGC 7 cut(s) 103, 234, 997, 1154, 1192, 1204, 1248
LweI GCATC 4 cut(s) 172, 178, 413, 437
MaeI CTAG 4 cut(s) 17, 1199, 1313, 1391
MaeII ACGT 2 cut(s) 930, 976
MaeIII GTNAC 3 cut(s) 710, 809, 917
MalI GATC 6 cut(s) 21, 295, 329, 380, 687, 738
MboI GATC 6 cut(s) 19, 293, 327, 378, 685, 736
MflI RGATCY 3 cut(s) 19, 378, 685
MhlI GDGCHC 1 cut(s) 1260
MluCI AATT 7 cut(s) 49, 55, 245, 414, 613, 940, 992
MlyI GAGTC 1 cut(s) 706
MmeI TCCRAC 1 cut(s) 732
Mph1103I ATGCAT 1 cut(s) 430
MroXI GAANNNNTTC 2 cut(s) 338, 840
MseI TTAA 3 cut(s) 53, 195, 665
MslI CAYNNNNRTG 3 cut(s) 102, 800, 858
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 6 cut(s) 487, 519, 524, 681, 747, 1133
Mva1269I GAATGC 2 cut(s) 259, 1077
MvaI CCWGG 6 cut(s) 487, 519, 524, 681, 747, 1133
MvnI CGCG 3 cut(s) 300, 590, 859
MwoI GCNNNNNNNGC 3 cut(s) 166, 660, 1214
NdeII GATC 6 cut(s) 19, 293, 327, 378, 685, 736
NlaIII CATG 8 cut(s) 101, 403, 560, 764, 799, 857, 1058, 1273
NlaIV GGNNCC 4 cut(s) 150, 549, 887, 1341
NmeAIII GCCGAG 1 cut(s) 1040
NmuCI GTSAC 1 cut(s) 710
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 3 cut(s) 560, 764, 1273
PasI CCCWGGG 1 cut(s) 680
PciI ACATGT 1 cut(s) 760
PciSI GCTCTTC 1 cut(s) 975
PctI GAATGC 2 cut(s) 259, 1077
PdmI GAANNNNTTC 2 cut(s) 338, 840
PfeI GAWTC 5 cut(s) 200, 1187, 1285, 1321, 1410
PflFI GACNNNGTC 1 cut(s) 716
PflMI CCANNNNNTGG 1 cut(s) 1132
PkrI GCNGC 8 cut(s) 93, 224, 987, 1144, 1207, 1219, 1238, 1318
PleI GAGTC 1 cut(s) 705
PpsI GAGTC 1 cut(s) 705
Ppu21I YACGTR 1 cut(s) 977
PscI ACATGT 1 cut(s) 760
Psp6I CCWGG 6 cut(s) 485, 517, 522, 679, 745, 1131
PspEI GGTNACC 1 cut(s) 917
PspGI CCWGG 6 cut(s) 485, 517, 522, 679, 745, 1131
PspN4I GGNNCC 4 cut(s) 150, 549, 887, 1341
PspPI GGNCC 5 cut(s) 148, 320, 483, 547, 1339
PstNI CAGNNNCTG 1 cut(s) 1039
PsuI RGATCY 3 cut(s) 19, 378, 685
PsyI GACNNNGTC 1 cut(s) 716
RsaI GTAC 6 cut(s) 27, 676, 906, 929, 975, 1274
RsaNI GTAC 6 cut(s) 26, 675, 905, 928, 974, 1273
RseI CAYNNNNRTG 3 cut(s) 102, 800, 858
SapI GCTCTTC 1 cut(s) 975
SaqAI TTAA 3 cut(s) 53, 195, 665
SatI GCNGC 8 cut(s) 92, 223, 986, 1143, 1206, 1218, 1237, 1317
Sau3AI GATC 6 cut(s) 19, 293, 327, 378, 685, 736
Sau96I GGNCC 5 cut(s) 148, 320, 483, 547, 1339
ScaI AGTACT 1 cut(s) 906
SchI GAGTC 1 cut(s) 706
ScrFI CCNGG 6 cut(s) 487, 519, 524, 681, 747, 1133
SduI GDGCHC 1 cut(s) 1260
SfaNI GCATC 4 cut(s) 172, 178, 413, 437
SgrAI CRCCGGYG 1 cut(s) 205
SinI GGWCC 3 cut(s) 148, 320, 1339
SmiI ATTTAAAT 1 cut(s) 54
SmiMI CAYNNNNRTG 3 cut(s) 102, 800, 858
Sse9I AATT 7 cut(s) 49, 55, 245, 414, 613, 940, 992
SsiI CCGC 4 cut(s) 231, 590, 850, 1316
SspI AATATT 3 cut(s) 135, 339, 1150
SspMI CTAG 4 cut(s) 17, 1199, 1313, 1391
StyD4I CCNGG 6 cut(s) 485, 517, 522, 679, 745, 1131
SwaI ATTTAAAT 1 cut(s) 54
TaaI ACNGT 5 cut(s) 237, 718, 1035, 1174, 1226
TaiI ACGT 2 cut(s) 933, 979
TaqI TCGA 2 cut(s) 342, 936
TasI AATT 7 cut(s) 49, 55, 245, 414, 613, 940, 992
TatI WGTACW 1 cut(s) 904
TauI GCSGC 1 cut(s) 1319
TfiI GAWTC 5 cut(s) 200, 1187, 1285, 1321, 1410
Tru1I TTAA 3 cut(s) 53, 195, 665
Tru9I TTAA 3 cut(s) 53, 195, 665
TscAI CASTG 5 cut(s) 242, 322, 635, 721, 886
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 7 cut(s) 91, 222, 985, 1142, 1205, 1217, 1236
Tsp45I GTSAC 1 cut(s) 710
TspDTI ATGAA 5 cut(s) 321, 388, 453, 473, 1376
TspRI CASTG 5 cut(s) 242, 322, 635, 721, 886
Tth111I GACNNNGTC 1 cut(s) 716
Van91I CCANNNNNTGG 1 cut(s) 1132
VpaK11BI GGWCC 3 cut(s) 148, 320, 1339
XapI RAATTY 4 cut(s) 49, 55, 940, 992
XbaI TCTAGA 1 cut(s) 16
XceI RCATGY 3 cut(s) 560, 764, 1273
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmiI GTMKAC 2 cut(s) 108, 1167
XmnI GAANNNNTTC 2 cut(s) 338, 840
XspI CTAG 4 cut(s) 17, 1199, 1313, 1391
ZrmI AGTACT 1 cut(s) 906
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.