Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8257077.1

Orthogroup ID

OG0002095

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 790

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8257077.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgaattttggctatttgatttgtaatataaggtcattgaaggcaactgtgctagactccaatctcaattttgttacctcagagattgtccaatttgacactagtttgcctcattacaaaaccaaagatggagtttaccgagatgcctcggttgatggtagaattgtttcccccaccttgatgtgggtagaagctctagatcttgtacttgataaacttttgaaatcaaagttggattttgggaagatcattgctgtttcgggtagtgggcagcaacatggtagtgtctattggaagaatgggagttcctcaatcttgtcatcattggactccaaaaagccaatggtggatcagctcaaagatgccttttcggtgaaggaatcgccggtatggatggacagcagcaccacagcacaatgtaaagaattagagaatgctgttggtggagcattgcagctatcccaaattacaggttcacgtgcatatgaaagattcacaggaccacagatcaagaagatattcgagacacatccagaagtttatagcaacactgagaggatctctctcgttagttcttttttggcgtctcttctaattgggggatatgcctgtattgatgaaactgatggtgcagggatgaacttgatggatataaagaaaaggatctggtctaaagtactattagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004856 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0005997 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019321 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Erg28 FGGY_C FGGY_N

Protein Analysis

229

Amino Acids

25.29

Weight (kDa)

6.32

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49650 AT5G49650
fragaria_vesca	FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33570
malus_domestica	MD08G1210700.v1.1 MD15G1398600.v1.1
prunus_persica	Prupe.1G542700_v2.0.a1 Prupe.1G542700_v2.0.a1
pyrus_communis	pycom08g18160 pycom15g35480
rosa_chinensis	RchiOBHm_Chr7g0232371 RchiOBHm_Chr7g0232391 RchiOBHm_Chr7g0232401
rosa_laevigata	RLG00000001346 RLG00000001347 RLG00000001351
rosa_multiflora	Rmu_co8257077.1_g000001 Rmu_sc0003113.1_g000011 Rmu_sc0003113.1_g000018 Rmu_ssc0000484.1_g000014
rosa_roxburghii	Rroxscaffold_3G00228360 Rroxscaffold_3G00228410
rosa_rugosa	Rorug07G0273100 Rorug07G0274500
rosa_samantha	Rh7AG426800 Rh7AG427100 Rh7BG400600 Rh7BG401800 Rh7BG402000 Rh7CG446600 Rh7DG418200 Rh7DG418500
rosa_wichuraiana	Rw7G035410 Rw7G035440 Rw7G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	357, 566, 671
AcsI	RAATTY	1 cut(s)	4
AcvI	CACGTG	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	584
AfaI	GTAC	2 cut(s)	207, 678
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	40, 223
AhlI	ACTAGT	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	3 cut(s)	194, 355, 457
AluI	AGCT	3 cut(s)	194, 355, 457
Alw26I	GTCTC	2 cut(s)	518, 591
AlwI	GGATC	3 cut(s)	357, 566, 671
ApeKI	GCWGC	3 cut(s)	271, 402, 454
ApoI	RAATTY	1 cut(s)	4
Asp700I	GAANNNNTTC	2 cut(s)	166, 518
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	500
BbrPI	CACGTG	1 cut(s)	479
BbvI	GCAGC	3 cut(s)	283, 414, 466
BccI	CCATC	5 cut(s)	122, 149, 388, 620, 640
BcoDI	GTCTC	2 cut(s)	518, 591
BcuI	ACTAGT	1 cut(s)	101
BfaI	CTAG	3 cut(s)	53, 102, 197
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	3 cut(s)	272, 403, 455
BlsI	GCNGC	3 cut(s)	273, 404, 456
BmcAI	AGTACT	1 cut(s)	678
Bme18I	GGWCC	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	500
BmsI	GCATC	2 cut(s)	133, 352
BplI	GAGNNNNNCTC	4 cut(s)	545, 577, 547, 579
BsaAI	YACGTR	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	584
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse118I	RCCGGY	1 cut(s)	385
Bse3DI	GCAATG	2 cut(s)	249, 449
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	3 cut(s)	399, 529, 642
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMI	GCAATG	2 cut(s)	249, 449
BseMII	CTCAG	2 cut(s)	93, 543
BseXI	GCAGC	3 cut(s)	283, 414, 466
BsgI	GTGCAG	1 cut(s)	651
BsiSI	CCGG	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	2 cut(s)	518, 591
BsmBI	CGTCTC	1 cut(s)	591
BsmI	GAATGC	1 cut(s)	439
Bsp143I	GATC	6 cut(s)	199, 246, 349, 507, 558, 663
BspCNI	CTCAG	2 cut(s)	92, 544
BspPI	GGATC	3 cut(s)	357, 566, 671
BsrDI	GCAATG	2 cut(s)	249, 449
BsrFI	RCCGGY	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	385
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	6 cut(s)	199, 246, 349, 507, 558, 663
BssNI	GRCGYC	1 cut(s)	584
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	594
BstACI	GRCGYC	1 cut(s)	584
BstBAI	YACGTR	1 cut(s)	479
BstDEI	CTNAG	2 cut(s)	79, 552
BstF5I	GGATG	3 cut(s)	399, 529, 642
BstKTI	GATC	6 cut(s)	202, 249, 352, 510, 561, 666
BstMAI	GTCTC	2 cut(s)	518, 591
BstMBI	GATC	6 cut(s)	199, 246, 349, 507, 558, 663
BstV1I	GCAGC	3 cut(s)	283, 414, 466
BstX2I	RGATCY	3 cut(s)	199, 558, 663
BstYI	RGATCY	3 cut(s)	199, 558, 663
BtsCI	GGATG	3 cut(s)	399, 529, 642
BtsIMutI	CAGTG	1 cut(s)	549
Cfr10I	RCCGGY	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	500
CseI	GACGC	1 cut(s)	573
Csp6I	GTAC	2 cut(s)	206, 677
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	5 cut(s)	12, 194, 340, 355, 457
CviKI_1	RGCY	5 cut(s)	12, 194, 340, 355, 457
CviQI	GTAC	2 cut(s)	206, 677
DdeI	CTNAG	2 cut(s)	79, 552
DpnI	GATC	6 cut(s)	201, 248, 351, 509, 560, 665
DpnII	GATC	6 cut(s)	199, 246, 349, 507, 558, 663
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	500
Eco72I	CACGTG	1 cut(s)	479
Esp3I	CGTCTC	1 cut(s)	591
FaeI	CATG	1 cut(s)	281
FaiI	YATR	8 cut(s)	29, 279, 391, 484, 486, 543, 606, 653
FatI	CATG	1 cut(s)	277
FauNDI	CATATG	1 cut(s)	484
Fnu4HI	GCNGC	3 cut(s)	272, 403, 455
FokI	GGATG	3 cut(s)	406, 516, 649
Fsp4HI	GCNGC	3 cut(s)	272, 403, 455
FspBI	CTAG	3 cut(s)	53, 102, 197
GluI	GCNGC	3 cut(s)	272, 403, 455
HapII	CCGG	1 cut(s)	386
HgaI	GACGC	1 cut(s)	573
Hin1I	GRCGYC	1 cut(s)	584
Hin1II	CATG	1 cut(s)	281
HinfI	GANTC	4 cut(s)	56, 329, 380, 492
HpaII	CCGG	1 cut(s)	386
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	2 cut(s)	136, 476
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	4 cut(s)	197, 511, 523, 533
Hpy8I	GTNNAC	2 cut(s)	136, 476
HpyAV	CCTTC	2 cut(s)	34, 370
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	3 cut(s)	454, 482, 632
HpyF3I	CTNAG	2 cut(s)	79, 552
HpySE526I	ACGT	1 cut(s)	478
Hsp92I	GRCGYC	1 cut(s)	584
Hsp92II	CATG	1 cut(s)	281
Kzo9I	GATC	6 cut(s)	199, 246, 349, 507, 558, 663
LmnI	GCTCC	1 cut(s)	446
LpnPI	CCDG	7 cut(s)	399, 456, 483, 546, 618, 622, 652
Lsp1109I	GCAGC	3 cut(s)	283, 414, 466
LweI	GCATC	2 cut(s)	133, 352
MaeI	CTAG	3 cut(s)	53, 102, 197
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	6 cut(s)	201, 248, 351, 509, 560, 665
MboI	GATC	6 cut(s)	199, 246, 349, 507, 558, 663
MboII	GAAGA	4 cut(s)	256, 307, 526, 581
MflI	RGATCY	3 cut(s)	199, 558, 663
MluCI	AATT	7 cut(s)	4, 67, 92, 162, 425, 465, 594
MlyI	GAGTC	2 cut(s)	50, 323
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	5 cut(s)	88, 120, 157, 319, 549
MroXI	GAANNNNTTC	2 cut(s)	166, 518
MslI	CAYNNNNRTG	2 cut(s)	179, 282
MspI	CCGG	1 cut(s)	386
Mva1269I	GAATGC	1 cut(s)	439
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	6 cut(s)	199, 246, 349, 507, 558, 663
NlaIII	CATG	1 cut(s)	281
PctI	GAATGC	1 cut(s)	439
PdmI	GAANNNNTTC	2 cut(s)	166, 518
PfeI	GAWTC	2 cut(s)	380, 492
PkrI	GCNGC	3 cut(s)	273, 404, 456
PleI	GAGTC	2 cut(s)	50, 323
PmaCI	CACGTG	1 cut(s)	479
PmlI	CACGTG	1 cut(s)	479
PpsI	GAGTC	2 cut(s)	50, 323
Ppu21I	YACGTR	1 cut(s)	479
PspCI	CACGTG	1 cut(s)	479
PspPI	GGNCC	1 cut(s)	500
PsuI	RGATCY	3 cut(s)	199, 558, 663
RsaI	GTAC	2 cut(s)	207, 678
RsaNI	GTAC	2 cut(s)	206, 677
RseI	CAYNNNNRTG	2 cut(s)	179, 282
SatI	GCNGC	3 cut(s)	272, 403, 455
Sau3AI	GATC	6 cut(s)	199, 246, 349, 507, 558, 663
Sau96I	GGNCC	1 cut(s)	500
ScaI	AGTACT	1 cut(s)	678
SchI	GAGTC	2 cut(s)	50, 323
SetI	ASST	8 cut(s)	35, 80, 179, 196, 357, 459, 475, 481
SfaNI	GCATC	2 cut(s)	133, 352
SinI	GGWCC	1 cut(s)	500
SmiMI	CAYNNNNRTG	2 cut(s)	179, 282
SpeI	ACTAGT	1 cut(s)	101
Sse9I	AATT	7 cut(s)	4, 67, 92, 162, 425, 465, 594
SspMI	CTAG	3 cut(s)	53, 102, 197
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	1 cut(s)	522
TasI	AATT	7 cut(s)	4, 67, 92, 162, 425, 465, 594
TatI	WGTACW	2 cut(s)	205, 676
TfiI	GAWTC	2 cut(s)	380, 492
TscAI	CASTG	1 cut(s)	556
TseI	GCWGC	3 cut(s)	271, 402, 454
TspDTI	ATGAA	4 cut(s)	17, 501, 633, 653
TspRI	CASTG	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	500
XapI	RAATTY	1 cut(s)	4
XbaI	TCTAGA	1 cut(s)	196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmnI	GAANNNNTTC	2 cut(s)	166, 518
XspI	CTAG	3 cut(s)	53, 102, 197
ZrmI	AGTACT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.