Rh7DG418500

Xylulose kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002095
Physical Location & Seq
Forward (+)
58907902 .. 58910495
2594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG418500.1

Sequence Viewer

Length: 810 bp
ATGGCAGACTTCTCTCTCCCTAAGGATTCTTATTTCCTTGGATTTGACAGTTCTACCCAGTCATTGAAGGCAACTGTGCTAGACTCCAATCTCAATTTTGTTACCTCAGAGCTTGTCCAATTTGACACTTGTTTGGCTCATTACAAAACCAAAGATGGAGTTTACCGAGATGCCTCGATTGATGGTAGAGTTGTTTCACCCACCCTGATGTGGGTAGAAGCTCTAGATCTTGTACTCGATAAACTTTTGAAATCACATTTGGATTTTGGGAAGATCACTGCTGTTTCCGGTAGTGGGCAGCAACATGGTAGTGTCTATTGGAAGAATGGGAGTTCCTCAATCTTGTCATCATTGGACTCCAAAGTGCCATTGGTGGATCAGCTAAATGATGCCTTTTCGGTGAAGGAATCGCCAATATGGATGGACAGCAGCACCACAGCACAATGTAAAGAATTAGAGAATGCTGTTGGTGGAGCATTACAGCTATCCCAACTTACAGGTTCGCGTGCTTACGAAAGATTCACAGGACCACAGATCAAGAAGATATTCGAGACACATCCAGAAGTTTATAACAACACTGAGAGGATCTCTCTTGTTAGTTCTTTTATGGCGTCTCTTCTAATTGGGAGATATGCGTGTATTGATGAAAGTGATGGTGCAGGGATGAACTTGATGGATATAAAGAAAAGGACCTGGTCTAAAGTACTATTAGAGGCCACTGCCCCTGGTCTGGAGGATAAACTTGGAAAGTTAGCCCCTGCCCATGCTGTTGCAGGCCACATTGCTCCCTATTTCGTGGAGAGAGCATAG

Protein Analysis

269

Amino Acids

29.41

Weight (kDa)

5.53

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FGGY_N PF00370 138 - 265 5.4e-15 FGGY family of carbohydrate kinases, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 570
AccII CGCG 1 cut(s) 505
AclWI GGATC 2 cut(s) 384, 593
AcyI GRCGYC 1 cut(s) 611
AfaI GTAC 2 cut(s) 234, 705
AfiI CCNNNNNNNGG 4 cut(s) 210, 211, 294, 730
AgsI TTSAA 2 cut(s) 67, 250
AjnI CCWGG 2 cut(s) 692, 724
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 4 cut(s) 112, 221, 382, 484
AluI AGCT 4 cut(s) 112, 221, 382, 484
Alw26I GTCTC 2 cut(s) 545, 618
AlwI GGATC 2 cut(s) 384, 593
AoxI GGCC 2 cut(s) 714, 775
ApeKI GCWGC 2 cut(s) 298, 429
Asp700I GAANNNNTTC 1 cut(s) 545
AspS9I GGNCC 2 cut(s) 527, 690
AsuHPI GGTGA 2 cut(s) 189, 412
AvaII GGWCC 2 cut(s) 527, 690
AxyI CCTNAGG 1 cut(s) 21
BbvI GCAGC 2 cut(s) 310, 441
BccI CCATC 5 cut(s) 149, 176, 415, 647, 667
BciT130I CCWGG 2 cut(s) 694, 726
BcoDI GTCTC 2 cut(s) 545, 618
BfaI CTAG 2 cut(s) 80, 224
BglII AGATCT 1 cut(s) 226
BisI GCNGC 2 cut(s) 299, 430
BlsI GCNGC 2 cut(s) 300, 431
BmcAI AGTACT 1 cut(s) 705
Bme1390I CCNGG 2 cut(s) 694, 726
Bme18I GGWCC 2 cut(s) 527, 690
BmgT120I GGNCC 2 cut(s) 527, 690
BmrFI CCNGG 2 cut(s) 694, 726
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 2 cut(s) 160, 379
BmuI ACTGGG 1 cut(s) 52
BplI GAGNNNNNCTC 4 cut(s) 572, 604, 574, 606
BpmI CTGGAG 1 cut(s) 752
BsaHI GRCGYC 1 cut(s) 611
BsaJI CCNNGG 2 cut(s) 37, 724
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 4 cut(s) 210, 211, 294, 730
Bse1I ACTGG 1 cut(s) 58
Bse21I CCTNAGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 780
BseBI CCWGG 2 cut(s) 694, 726
BseDI CCNNGG 2 cut(s) 37, 724
BseGI GGATG 3 cut(s) 426, 556, 669
BseLI CCNNNNNNNGG 4 cut(s) 210, 211, 294, 730
BseMI GCAATG 1 cut(s) 780
BseMII CTCAG 2 cut(s) 120, 570
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 310, 441
BsgI GTGCAG 1 cut(s) 678
Bsh1236I CGCG 1 cut(s) 505
BshFI GGCC 2 cut(s) 716, 777
BsiSI CCGG 1 cut(s) 288
BslI CCNNNNNNNGG 4 cut(s) 210, 211, 294, 730
BsmAI GTCTC 2 cut(s) 545, 618
BsmBI CGTCTC 1 cut(s) 618
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 2 cut(s) 716, 777
Bsp143I GATC 5 cut(s) 226, 273, 376, 534, 585
BspANI GGCC 2 cut(s) 716, 777
BspCNI CTCAG 2 cut(s) 119, 571
BspFNI CGCG 1 cut(s) 505
BspPI GGATC 2 cut(s) 384, 593
BsrDI GCAATG 1 cut(s) 780
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 37, 724
BssMI GATC 5 cut(s) 226, 273, 376, 534, 585
BssNI GRCGYC 1 cut(s) 611
BssT1I CCWWGG 1 cut(s) 37
Bst2UI CCWGG 2 cut(s) 694, 726
Bst4CI ACNGT 2 cut(s) 50, 76
Bst6I CTCTTC 1 cut(s) 621
BstACI GRCGYC 1 cut(s) 611
BstC8I GCNNGC 2 cut(s) 507, 775
BstDEI CTNAG 3 cut(s) 21, 106, 579
BstF5I GGATG 3 cut(s) 426, 556, 669
BstFNI CGCG 1 cut(s) 505
BstKTI GATC 5 cut(s) 229, 276, 379, 537, 588
BstMAI GTCTC 2 cut(s) 545, 618
BstMBI GATC 5 cut(s) 226, 273, 376, 534, 585
BstNI CCWGG 2 cut(s) 694, 726
BstSCI CCNGG 2 cut(s) 692, 724
BstUI CGCG 1 cut(s) 505
BstV1I GCAGC 2 cut(s) 310, 441
BstX2I RGATCY 2 cut(s) 226, 585
BstYI RGATCY 2 cut(s) 226, 585
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 2 cut(s) 716, 777
BtsCI GGATG 3 cut(s) 426, 556, 669
BtsI GCAGTG 2 cut(s) 276, 717
BtsIMutI CAGTG 3 cut(s) 276, 576, 717
Cac8I GCNNGC 2 cut(s) 507, 775
Cfr13I GGNCC 2 cut(s) 527, 690
CseI GACGC 1 cut(s) 600
CsiI ACCWGGT 1 cut(s) 692
Csp6I GTAC 2 cut(s) 233, 704
CviAII CATG 2 cut(s) 305, 764
CviJI RGCY 8 cut(s) 112, 137, 221, 382, 484, 716, 755, 777
CviKI_1 RGCY 8 cut(s) 112, 137, 221, 382, 484, 716, 755, 777
CviQI GTAC 2 cut(s) 233, 704
DdeI CTNAG 3 cut(s) 21, 106, 579
DpnI GATC 5 cut(s) 228, 275, 378, 536, 587
DpnII GATC 5 cut(s) 226, 273, 376, 534, 585
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
Eco130I CCWWGG 1 cut(s) 37
Eco47I GGWCC 2 cut(s) 527, 690
Eco81I CCTNAGG 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 690
EcoRII CCWGG 2 cut(s) 692, 724
EcoT14I CCWWGG 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 37
Esp3I CGTCTC 1 cut(s) 618
FaeI CATG 2 cut(s) 308, 767
FaiI YATR 8 cut(s) 306, 418, 570, 608, 633, 680, 765, 808
FatI CATG 2 cut(s) 304, 763
Fnu4HI GCNGC 2 cut(s) 299, 430
FokI GGATG 3 cut(s) 433, 543, 676
Fsp4HI GCNGC 2 cut(s) 299, 430
FspBI CTAG 2 cut(s) 80, 224
GluI GCNGC 2 cut(s) 299, 430
GsuI CTGGAG 1 cut(s) 752
HaeIII GGCC 2 cut(s) 716, 777
HapII CCGG 1 cut(s) 288
HgaI GACGC 1 cut(s) 600
Hin1I GRCGYC 1 cut(s) 611
Hin1II CATG 2 cut(s) 308, 767
HinfI GANTC 5 cut(s) 26, 83, 356, 407, 519
HpaII CCGG 1 cut(s) 288
HphI GGTGA 2 cut(s) 189, 412
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 5 cut(s) 224, 538, 550, 560, 731
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 61, 397
HpyCH4III ACNGT 2 cut(s) 50, 76
HpyCH4V TGCA 2 cut(s) 659, 773
HpyF3I CTNAG 3 cut(s) 21, 106, 579
Hsp92I GRCGYC 1 cut(s) 611
Hsp92II CATG 2 cut(s) 308, 767
Kzo9I GATC 5 cut(s) 226, 273, 376, 534, 585
LmnI GCTCC 2 cut(s) 473, 790
Lsp1109I GCAGC 2 cut(s) 310, 441
LweI GCATC 2 cut(s) 160, 379
MabI ACCWGGT 1 cut(s) 692
MaeI CTAG 2 cut(s) 80, 224
MaeIII GTNAC 1 cut(s) 100
MalI GATC 5 cut(s) 228, 275, 378, 536, 587
MboI GATC 5 cut(s) 226, 273, 376, 534, 585
MboII GAAGA 4 cut(s) 283, 334, 553, 608
MflI RGATCY 2 cut(s) 226, 585
MluCI AATT 4 cut(s) 94, 119, 452, 621
MlyI GAGTC 2 cut(s) 77, 350
MnlI CCTC 6 cut(s) 115, 184, 346, 576, 706, 727
MroXI GAANNNNTTC 1 cut(s) 545
MslI CAYNNNNRTG 2 cut(s) 206, 309
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 694, 726
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 2 cut(s) 694, 726
MvnI CGCG 1 cut(s) 505
NdeII GATC 5 cut(s) 226, 273, 376, 534, 585
NlaIII CATG 2 cut(s) 308, 767
PctI GAATGC 1 cut(s) 466
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 3 cut(s) 26, 407, 519
PflFI GACNNNGTC 1 cut(s) 694
PkrI GCNGC 2 cut(s) 300, 431
PleI GAGTC 2 cut(s) 77, 350
PpsI GAGTC 2 cut(s) 77, 350
PpuMI RGGWCCY 1 cut(s) 690
PsiI TTATAA 1 cut(s) 570
Psp5II RGGWCCY 1 cut(s) 690
Psp6I CCWGG 2 cut(s) 692, 724
PspGI CCWGG 2 cut(s) 692, 724
PspPI GGNCC 2 cut(s) 527, 690
PspPPI RGGWCCY 1 cut(s) 690
PsuI RGATCY 2 cut(s) 226, 585
PsyI GACNNNGTC 1 cut(s) 694
RsaI GTAC 2 cut(s) 234, 705
RsaNI GTAC 2 cut(s) 233, 704
RseI CAYNNNNRTG 2 cut(s) 206, 309
SatI GCNGC 2 cut(s) 299, 430
Sau3AI GATC 5 cut(s) 226, 273, 376, 534, 585
Sau96I GGNCC 2 cut(s) 527, 690
ScaI AGTACT 1 cut(s) 705
SchI GAGTC 2 cut(s) 77, 350
ScrFI CCNGG 2 cut(s) 694, 726
SetI ASST 7 cut(s) 107, 114, 223, 384, 486, 502, 695
SexAI ACCWGGT 1 cut(s) 692
SfaNI GCATC 2 cut(s) 160, 379
SinI GGWCC 2 cut(s) 527, 690
SmiMI CAYNNNNRTG 2 cut(s) 206, 309
Sse9I AATT 4 cut(s) 94, 119, 452, 621
SspMI CTAG 2 cut(s) 80, 224
StyD4I CCNGG 2 cut(s) 692, 724
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 2 cut(s) 50, 76
TaqI TCGA 3 cut(s) 176, 237, 549
TasI AATT 4 cut(s) 94, 119, 452, 621
TatI WGTACW 2 cut(s) 232, 703
TfiI GAWTC 3 cut(s) 26, 407, 519
TscAI CASTG 3 cut(s) 283, 583, 724
TseI GCWGC 2 cut(s) 298, 429
TspDTI ATGAA 2 cut(s) 660, 680
TspRI CASTG 3 cut(s) 283, 583, 724
Tth111I GACNNNGTC 1 cut(s) 694
VpaK11BI GGWCC 2 cut(s) 527, 690
XbaI TCTAGA 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 2 cut(s) 80, 224
ZrmI AGTACT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.