Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002095

Physical Location & Seq

Genomic Coordinates Forward (+)

44515246 .. 44520323

Gene Structure 5078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG400600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAGATCTGATGCTCTGTATCTAAATTGGGTCAAACTTGATTTTTATTTGTTTTGCTTTGTACTCGAAAGGTCGCTGAAGGCAACTGTGCTAGACTCCAATCTCAACATTGTTACGACAGAGCTTATCCAATACGACACTGCTTTGCCCCATTACAACACCAAAGATGGAGTTTACCGAGACCCCTCGGTTGATGGGAGAATAGTTTCACCCACCTTGATGTGGATAGAGGCTCTAGATCTCGTACTTGATAAACTTTCAAAATCTAATTTAAATTTTGAGAAGATTGCTGCTGTTTCTGGTAGTGGGCAGCAACATGGGAGTGTCTACTGGAAGAATGGGAGTTCTTCAATATTATCATCTTTGGACCCCAAGAAGCCATTGGTGCATCAGTTCAATGATGCTTTCTCTGTTAAGGAATCGCCGGTGTGGATGGACAGCAGCACCACAGCACAGTGCAAAGAATTAGAGAATGCTGTTGGTGGAGCATTGGAGTTATCCAAACTGACAGGATCACGCGCTTATGAAAGGTTCACAGGACCACAGATCAAGAAAATATTCGAGACACATCCTGAAGTCTATAACAATACTGAGAGGATCTCCCTTGTTAGTTCTTTCATGGCATCTCTTCTAATCGGGGGATATGCATCTATTGATGAAACTGATGGTGCTGGGATGAACTTGATGGATATAAAGAAAAGGGCCTGGTCTGAAATAGTATTAGAGGCTACTGCCCCTGGCCTGGCAGAAAAACTTGGAAAACTGGCCCCTGCACATGCTGTCGCTGGTCGTATTGCCCCCTATTTTGCGGAGAGATATAAGTTCAACAAGAATTGCTTGGTTATTCAGTGGTCAGGAGACAACCCTAACAGCCTTGCAGGCTTAACACTAAGTACCCCTGGGGATCTTGGATTGAGTCTTGGCACAAGTGACACTGTCTTTGGGATTACTGATGATCCTCATCCTGGGTTGGAGGGACATGTTTTCCCTAATCCTGTTGACATAAAAGGCTACATGGTAATGTTGTGTTACAAGAATGGGTCTCTAACTCGTGAAGGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004856 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0005997 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019321 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Erg28 FGGY_C FGGY_N

Protein Analysis

354

Amino Acids

38.85

Weight (kDa)

5.57

Isoelectric Point (pI)

25.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FGGY_N	PF00370	143 - 292	7.3e-16	FGGY family of carbohydrate kinases, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49650 AT5G49650
fragaria_vesca	FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33550 FvH4_5g33570
malus_domestica	MD08G1210700.v1.1 MD15G1398600.v1.1
prunus_persica	Prupe.1G542700_v2.0.a1 Prupe.1G542700_v2.0.a1
pyrus_communis	pycom08g18160 pycom15g35480
rosa_chinensis	RchiOBHm_Chr7g0232371 RchiOBHm_Chr7g0232391 RchiOBHm_Chr7g0232401
rosa_laevigata	RLG00000001346 RLG00000001347 RLG00000001351
rosa_multiflora	Rmu_co8257077.1_g000001 Rmu_sc0003113.1_g000011 Rmu_sc0003113.1_g000018 Rmu_ssc0000484.1_g000014
rosa_roxburghii	Rroxscaffold_3G00228360 Rroxscaffold_3G00228410
rosa_rugosa	Rorug07G0273100 Rorug07G0274500
rosa_samantha	Rh7AG426800 Rh7AG427100 Rh7BG400600 Rh7BG401800 Rh7BG402000 Rh7CG446600 Rh7DG418200 Rh7DG418500
rosa_wichuraiana	Rw7G035410 Rw7G035440 Rw7G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	1 cut(s)	519
AciI	CCGC	1 cut(s)	809
AclWI	GGATC	4 cut(s)	520, 605, 912, 950
AcsI	RAATTY	1 cut(s)	274
AcuI	CTGAAG	2 cut(s)	98, 594
AfaI	GTAC	3 cut(s)	63, 246, 895
AfiI	CCNNNNNNNGG	3 cut(s)	222, 742, 965
AflIII	ACRYGT	1 cut(s)	979
AgsI	TTSAA	4 cut(s)	261, 351, 397, 826
AjnI	CCWGG	5 cut(s)	704, 736, 741, 898, 964
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw26I	GTCTC	4 cut(s)	174, 557, 852, 1047
AlwI	GGATC	4 cut(s)	520, 605, 912, 950
AoxI	GGCC	3 cut(s)	702, 739, 765
ApeKI	GCWGC	3 cut(s)	290, 310, 441
ApoI	RAATTY	1 cut(s)	274
ArsI	GACNNNNNNTTYG	2 cut(s)	923, 955
Asp700I	GAANNNNTTC	2 cut(s)	205, 557
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	4 cut(s)	367, 539, 702, 766
AsuHPI	GGTGA	1 cut(s)	201
AvaII	GGWCC	2 cut(s)	367, 539
BauI	CACGAG	1 cut(s)	1050
BbvI	GCAGC	3 cut(s)	277, 322, 453
BccI	CCATC	5 cut(s)	161, 188, 427, 659, 679
BciT130I	CCWGG	5 cut(s)	706, 738, 743, 900, 966
BcoDI	GTCTC	4 cut(s)	174, 557, 852, 1047
BfaI	CTAG	2 cut(s)	92, 236
BglI	GCCNNNNNGGC	1 cut(s)	879
BglII	AGATCT	2 cut(s)	5, 238
BisI	GCNGC	3 cut(s)	291, 311, 442
BlsI	GCNGC	3 cut(s)	292, 312, 443
Bme1390I	CCNGG	5 cut(s)	706, 738, 743, 900, 966
Bme18I	GGWCC	2 cut(s)	367, 539
BmgT120I	GGNCC	4 cut(s)	367, 539, 702, 766
BmiI	GGNNCC	2 cut(s)	369, 768
BmrFI	CCNGG	5 cut(s)	706, 738, 743, 900, 966
BmsI	GCATC	4 cut(s)	391, 397, 632, 656
BplI	GAGNNNNNCTC	2 cut(s)	584, 616
BsaBI	GATNNNNATC	2 cut(s)	646, 960
BsaI	GGTCTC	2 cut(s)	174, 1047
BsaJI	CCNNGG	5 cut(s)	186, 736, 898, 899, 965
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 742, 965
Bse118I	RCCGGY	1 cut(s)	424
Bse1I	ACTGG	2 cut(s)	335, 768
Bse8I	GATNNNNATC	2 cut(s)	646, 960
BseBI	CCWGG	5 cut(s)	706, 738, 743, 900, 966
BseDI	CCNNGG	5 cut(s)	186, 736, 898, 899, 965
BseGI	GGATG	4 cut(s)	438, 568, 681, 961
BseJI	GATNNNNATC	2 cut(s)	646, 960
BseLI	CCNNNNNNNGG	3 cut(s)	222, 742, 965
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	2 cut(s)	335, 768
BseXI	GCAGC	3 cut(s)	277, 322, 453
BseYI	CCCAGC	1 cut(s)	671
BsgI	GTGCAG	1 cut(s)	756
Bsh1236I	CGCG	1 cut(s)	519
BshFI	GGCC	3 cut(s)	704, 741, 767
BsiSI	CCGG	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	990
BslI	CCNNNNNNNGG	3 cut(s)	222, 742, 965
BsmAI	GTCTC	4 cut(s)	174, 557, 852, 1047
BsmFI	GGGAC	1 cut(s)	990
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	3 cut(s)	704, 741, 767
Bso31I	GGTCTC	2 cut(s)	174, 1047
Bsp143I	GATC	7 cut(s)	5, 238, 512, 546, 597, 904, 955
BspACI	CCGC	1 cut(s)	809
BspANI	GGCC	3 cut(s)	704, 741, 767
BspCNI	CTCAG	1 cut(s)	583
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	2 cut(s)	369, 768
BspPI	GGATC	4 cut(s)	520, 605, 912, 950
BspTNI	GGTCTC	2 cut(s)	174, 1047
BsrFI	RCCGGY	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	335, 768
BssAI	RCCGGY	1 cut(s)	424
BssECI	CCNNGG	5 cut(s)	186, 736, 898, 899, 965
BssMI	GATC	7 cut(s)	5, 238, 512, 546, 597, 904, 955
BssSI	CACGAG	1 cut(s)	1050
Bst2BI	CACGAG	1 cut(s)	1050
Bst2UI	CCWGG	5 cut(s)	706, 738, 743, 900, 966
Bst4CI	ACNGT	3 cut(s)	88, 456, 937
Bst6I	CTCTTC	1 cut(s)	633
BstC8I	GCNNGC	1 cut(s)	880
BstDEI	CTNAG	2 cut(s)	591, 890
BstF5I	GGATG	4 cut(s)	438, 568, 681, 961
BstFNI	CGCG	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	7 cut(s)	8, 241, 515, 549, 600, 907, 958
BstMAI	GTCTC	4 cut(s)	174, 557, 852, 1047
BstMBI	GATC	7 cut(s)	5, 238, 512, 546, 597, 904, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 879
BstNI	CCWGG	5 cut(s)	706, 738, 743, 900, 966
BstNSI	RCATGY	2 cut(s)	779, 983
BstSCI	CCNGG	5 cut(s)	704, 736, 741, 898, 964
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	3 cut(s)	277, 322, 453
BstX2I	RGATCY	4 cut(s)	5, 238, 597, 904
BstYI	RGATCY	4 cut(s)	5, 238, 597, 904
BsuRI	GGCC	3 cut(s)	704, 741, 767
BtsCI	GGATG	4 cut(s)	438, 568, 681, 961
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	4 cut(s)	138, 461, 854, 933
Cac8I	GCNNGC	1 cut(s)	880
CfoI	GCGC	1 cut(s)	521
Cfr10I	RCCGGY	1 cut(s)	424
Cfr13I	GGNCC	4 cut(s)	367, 539, 702, 766
Csp6I	GTAC	3 cut(s)	62, 245, 894
CviAII	CATG	5 cut(s)	317, 619, 776, 980, 1015
CviQI	GTAC	3 cut(s)	62, 245, 894
DdeI	CTNAG	2 cut(s)	591, 890
DpnI	GATC	7 cut(s)	7, 240, 514, 548, 599, 906, 957
DpnII	GATC	7 cut(s)	5, 238, 512, 546, 597, 904, 955
DraI	TTTAAA	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Eco31I	GGTCTC	2 cut(s)	174, 1047
Eco47I	GGWCC	2 cut(s)	367, 539
Eco57I	CTGAAG	2 cut(s)	98, 594
EcoO109I	RGGNCCY	1 cut(s)	702
EcoRII	CCWGG	5 cut(s)	704, 736, 741, 898, 964
EcoT22I	ATGCAT	1 cut(s)	649
FaeI	CATG	5 cut(s)	320, 622, 779, 983, 1018
FalI	AAGNNNNNCTT	2 cut(s)	821, 853
FaqI	GGGAC	1 cut(s)	990
FatI	CATG	5 cut(s)	316, 618, 775, 979, 1014
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	3 cut(s)	291, 311, 442
FokI	GGATG	4 cut(s)	445, 555, 688, 948
Fsp4HI	GCNGC	3 cut(s)	291, 311, 442
FspBI	CTAG	2 cut(s)	92, 236
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	3 cut(s)	291, 311, 442
GsaI	CCCAGC	1 cut(s)	675
HaeIII	GGCC	3 cut(s)	704, 741, 767
HapII	CCGG	1 cut(s)	425
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	5 cut(s)	320, 622, 779, 983, 1018
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HincII	GTYRAC	1 cut(s)	1000
HindII	GTYRAC	1 cut(s)	1000
HinfI	GANTC	3 cut(s)	95, 419, 916
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	1 cut(s)	201
Hpy166II	GTNNAC	4 cut(s)	175, 328, 534, 1000
Hpy188I	TCNGA	2 cut(s)	10, 712
Hpy188III	TCNNGA	6 cut(s)	236, 550, 562, 572, 855, 1052
Hpy8I	GTNNAC	4 cut(s)	175, 328, 534, 1000
HpyAV	CCTTC	2 cut(s)	73, 1049
HpyCH4III	ACNGT	3 cut(s)	88, 456, 937
HpyCH4V	TGCA	5 cut(s)	388, 459, 647, 773, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 879
HpyF3I	CTNAG	2 cut(s)	591, 890
Hsp92II	CATG	5 cut(s)	320, 622, 779, 983, 1018
HspAI	GCGC	1 cut(s)	519
Kzo9I	GATC	7 cut(s)	5, 238, 512, 546, 597, 904, 955
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	3 cut(s)	277, 322, 453
LweI	GCATC	4 cut(s)	391, 397, 632, 656
MaeI	CTAG	2 cut(s)	92, 236
MaeIII	GTNAC	3 cut(s)	112, 929, 1028
MalI	GATC	7 cut(s)	7, 240, 514, 548, 599, 906, 957
MboI	GATC	7 cut(s)	5, 238, 512, 546, 597, 904, 955
MboII	GAAGA	4 cut(s)	295, 339, 346, 620
MflI	RGATCY	4 cut(s)	5, 238, 597, 904
MluCI	AATT	5 cut(s)	25, 268, 274, 464, 832
MlyI	GAGTC	2 cut(s)	89, 925
MmeI	TCCRAC	1 cut(s)	951
MnlI	CCTC	6 cut(s)	196, 223, 588, 718, 967, 969
Mph1103I	ATGCAT	1 cut(s)	649
MroXI	GAANNNNTTC	2 cut(s)	205, 557
MseI	TTAA	3 cut(s)	272, 414, 884
MslI	CAYNNNNRTG	3 cut(s)	218, 321, 1019
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	5 cut(s)	706, 738, 743, 900, 966
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	5 cut(s)	706, 738, 743, 900, 966
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	2 cut(s)	385, 879
NdeII	GATC	7 cut(s)	5, 238, 512, 546, 597, 904, 955
NlaIII	CATG	5 cut(s)	320, 622, 779, 983, 1018
NlaIV	GGNNCC	2 cut(s)	369, 768
NmuCI	GTSAC	1 cut(s)	929
NsiI	ATGCAT	1 cut(s)	649
NspI	RCATGY	2 cut(s)	779, 983
PasI	CCCWGGG	1 cut(s)	899
PciI	ACATGT	1 cut(s)	979
PctI	GAATGC	1 cut(s)	478
PdmI	GAANNNNTTC	2 cut(s)	205, 557
PfeI	GAWTC	1 cut(s)	419
PflFI	GACNNNGTC	1 cut(s)	935
PkrI	GCNGC	3 cut(s)	292, 312, 443
PleI	GAGTC	2 cut(s)	89, 924
PpsI	GAGTC	2 cut(s)	89, 924
PscI	ACATGT	1 cut(s)	979
Psp6I	CCWGG	5 cut(s)	704, 736, 741, 898, 964
PspFI	CCCAGC	1 cut(s)	671
PspGI	CCWGG	5 cut(s)	704, 736, 741, 898, 964
PspN4I	GGNNCC	2 cut(s)	369, 768
PspPI	GGNCC	4 cut(s)	367, 539, 702, 766
PsuI	RGATCY	4 cut(s)	5, 238, 597, 904
PsyI	GACNNNGTC	1 cut(s)	935
RsaI	GTAC	3 cut(s)	63, 246, 895
RsaNI	GTAC	3 cut(s)	62, 245, 894
RseI	CAYNNNNRTG	3 cut(s)	218, 321, 1019
SaqAI	TTAA	3 cut(s)	272, 414, 884
SatI	GCNGC	3 cut(s)	291, 311, 442
Sau3AI	GATC	7 cut(s)	5, 238, 512, 546, 597, 904, 955
Sau96I	GGNCC	4 cut(s)	367, 539, 702, 766
SchI	GAGTC	2 cut(s)	89, 925
ScrFI	CCNGG	5 cut(s)	706, 738, 743, 900, 966
SetI	ASST	5 cut(s)	74, 126, 218, 533, 1060
SfaNI	GCATC	4 cut(s)	391, 397, 632, 656
SgrAI	CRCCGGYG	1 cut(s)	424
SinI	GGWCC	2 cut(s)	367, 539
SmiI	ATTTAAAT	1 cut(s)	273
SmiMI	CAYNNNNRTG	3 cut(s)	218, 321, 1019
Sse9I	AATT	5 cut(s)	25, 268, 274, 464, 832
SsiI	CCGC	1 cut(s)	809
SspI	AATATT	2 cut(s)	354, 558
SspMI	CTAG	2 cut(s)	92, 236
StyD4I	CCNGG	5 cut(s)	704, 736, 741, 898, 964
SwaI	ATTTAAAT	1 cut(s)	273
TaaI	ACNGT	3 cut(s)	88, 456, 937
TaqI	TCGA	2 cut(s)	66, 561
TasI	AATT	5 cut(s)	25, 268, 274, 464, 832
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	3 cut(s)	272, 414, 884
Tru9I	TTAA	3 cut(s)	272, 414, 884
TscAI	CASTG	4 cut(s)	145, 461, 854, 940
TseFI	GTSAC	1 cut(s)	929
TseI	GCWGC	3 cut(s)	290, 310, 441
Tsp45I	GTSAC	1 cut(s)	929
TspDTI	ATGAA	4 cut(s)	540, 607, 672, 692
TspRI	CASTG	4 cut(s)	145, 461, 854, 940
Tth111I	GACNNNGTC	1 cut(s)	935
VpaK11BI	GGWCC	2 cut(s)	367, 539
XapI	RAATTY	1 cut(s)	274
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	2 cut(s)	779, 983
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	327
XmnI	GAANNNNTTC	2 cut(s)	205, 557
XspI	CTAG	2 cut(s)	92, 236
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.