Rmu_sc0003113.1_g000018

Xylulose kinase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003113.1
Physical Location & Seq
Forward (+)
97038 .. 102054
5017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003113.1_g000018.1.cds

Sequence Viewer

Length: 1623 bp
atggaaactccaaactggagaggtggttccagtgggtcattgaaggcaactgtgctagactccaatctcaattttgttacctcagagcttgtccaatttgacacttgtttggctcattacaaaaccaaagatggagtttaccgagatgcctcgattgatggtagagttgtttcacccaccctgatgtgggtagaagctctagatcttgtactcgataaacttttgaaatcacatttggattttgggaagatcactgctgtttccggtagtgggcagcaacatggtagtgtctattggaagaatgggagttcctcaatcttgtcatcattggactccaaagtgccattggtggatcagctaaatgatgccttttcggtgaaggaatcgccaatatggatggacagcagcaccacagcacaatgtaaagaattagagaatgctgttggtggagcattacagctatcccaacttacaggttcgcgtgcttacgaaagattcacaggaccacagatcaagaagatatttgagacgcgtccagaagtttataacaacactgagaggatctctcttgttagttcttttatggcgtctcttctaattgggagatatgcgtgtattgatgaaagtgatggtgcagggatgaacttgatggatataaagaaaaggacctggtctaaagtactattagaggtcactgcccctggtctggaggataaacttggaaagttagcccctgcccatgctgttgcaggtcacattgctccctatttcgtggagaggttagtgacagtttatttgtttgtgtgcttaaccctaagtaccccaggggatcttggattgagtcttgacacgagtgatactgtctttggtattactgatgatcctcaacctggattagaaggacatgttttccctaatcctgttgacacgaaaagctacatagtaatgttgtgttacaagaatgggtctccagctcgtgaaggtattcggaaccgctattgcgaaggttcttgggatagattcaacacatatcttacatatgccaagcccctaaatgttcctgctacagatggaaagatgagtttctactatacggagcatgaaattcttcccccacttccagttggatttcatcgctacattcttgaaaatttcaccggcgatactttggagggtgtgactgtacgtgaagtggagcagcagtttgatccaaaatttgatgaggctcgagcagtagtagagggccagatcatgtctatgcgaggtcatgcagaaagatatggaatgccttctcctccaaaacgattgatagcaactggtagttcatcagtgaatcgtgccttcctgtacattgcagcgtgtgtatttggatgcgagttgtacacagttcgtagatctgattcagtttctcttggagctgcattgagggctgttcatggttggctatgcagttcaaaaggtacttttgtgccattctcgtgcttgcatgacaagaataatacgtctctcaagtgcaaacttgaagctatttcagacataaatttggttgacaagtatgcgttgatggtgaagaagagacttgaaatagagaactgcctcgttgaaaaactcggatgcatgtaa

Protein Analysis

540

Amino Acids

59.6

Weight (kDa)

6.05

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 546
Acc36I ACCTGC 1 cut(s) 740
AccII CGCG 2 cut(s) 481, 532
AciI CCGC 1 cut(s) 994
AclWI GGATC 5 cut(s) 360, 569, 837, 875, 1202
AcsI RAATTY 4 cut(s) 1104, 1150, 1214, 1540
AcyI GRCGYC 1 cut(s) 587
AfaI GTAC 7 cut(s) 210, 681, 820, 1185, 1349, 1382, 1462
AfiI CCNNNNNNNGG 5 cut(s) 186, 187, 270, 706, 890
AflIII ACRYGT 2 cut(s) 530, 904
AgsI TTSAA 8 cut(s) 43, 226, 1024, 1148, 1455, 1523, 1583, 1604
AjnI CCWGG 4 cut(s) 668, 700, 823, 889
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AloI GAACNNNNNNTCC 2 cut(s) 10, 42
AluBI AGCT 8 cut(s) 88, 197, 358, 460, 936, 974, 1418, 1526
AluI AGCT 8 cut(s) 88, 197, 358, 460, 936, 974, 1418, 1526
Alw26I GTCTC 5 cut(s) 521, 594, 972, 1509, 1570
AlwI GGATC 5 cut(s) 360, 569, 837, 875, 1202
Ama87I CYCGRG 1 cut(s) 1227
AoxI GGCC 1 cut(s) 1243
ApeKI GCWGC 5 cut(s) 274, 405, 1198, 1355, 1418
ApoI RAATTY 4 cut(s) 1104, 1150, 1214, 1540
ArsI GACNNNNNNTTYG 2 cut(s) 778, 810
Asp700I GAANNNNTTC 3 cut(s) 984, 1107, 1288
AspS9I GGNCC 3 cut(s) 503, 666, 1243
AsuHPI GGTGA 4 cut(s) 165, 388, 1147, 1579
AvaI CYCGRG 1 cut(s) 1227
AvaII GGWCC 2 cut(s) 503, 666
BaeI ACNNNNGTAYC 2 cut(s) 1452, 1485
BauI CACGAG 3 cut(s) 850, 975, 1477
BbvI GCAGC 5 cut(s) 286, 417, 1210, 1367, 1405
BccI CCATC 7 cut(s) 125, 152, 391, 623, 643, 1064, 1558
BciT130I CCWGG 4 cut(s) 670, 702, 825, 891
BcoDI GTCTC 5 cut(s) 521, 594, 972, 1509, 1570
BfaI CTAG 2 cut(s) 56, 200
BfmI CTRYAG 1 cut(s) 1065
BfuAI ACCTGC 1 cut(s) 740
BglII AGATCT 2 cut(s) 202, 1394
BisI GCNGC 5 cut(s) 275, 406, 1199, 1356, 1419
BlsI GCNGC 5 cut(s) 276, 407, 1200, 1357, 1420
BmcAI AGTACT 1 cut(s) 681
Bme1390I CCNGG 4 cut(s) 670, 702, 825, 891
Bme18I GGWCC 2 cut(s) 503, 666
BmeT110I CYCGRG 1 cut(s) 1227
BmgT120I GGNCC 3 cut(s) 503, 666, 1243
BmiI GGNNCC 2 cut(s) 28, 992
BmrFI CCNGG 4 cut(s) 670, 702, 825, 891
BmsI GCATC 4 cut(s) 136, 355, 1361, 1604
BplI GAGNNNNNCTC 4 cut(s) 548, 580, 550, 582
BpmI CTGGAG 3 cut(s) 37, 728, 954
BpuEI CTTGAG 1 cut(s) 1493
BsaAI YACGTR 1 cut(s) 1187
BsaHI GRCGYC 1 cut(s) 587
BsaI GGTCTC 1 cut(s) 972
BsaJI CCNNGG 3 cut(s) 700, 823, 824
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 1187, 1217
Bsc4I CCNNNNNNNGG 5 cut(s) 186, 187, 270, 706, 890
Bse118I RCCGGY 1 cut(s) 1157
Bse1I ACTGG 4 cut(s) 20, 30, 1121, 1321
Bse3DI GCAATG 2 cut(s) 756, 1350
BseBI CCWGG 4 cut(s) 670, 702, 825, 891
BseDI CCNNGG 3 cut(s) 700, 823, 824
BseGI GGATG 4 cut(s) 402, 645, 1376, 1619
BseLI CCNNNNNNNGG 5 cut(s) 186, 187, 270, 706, 890
BseMI GCAATG 2 cut(s) 756, 1350
BseMII CTCAG 2 cut(s) 96, 546
BseNI ACTGG 4 cut(s) 20, 30, 1121, 1321
BseRI GAGGAG 1 cut(s) 1284
BseXI GCAGC 5 cut(s) 286, 417, 1210, 1367, 1405
BsgI GTGCAG 1 cut(s) 654
Bsh1236I CGCG 2 cut(s) 481, 532
BshFI GGCC 1 cut(s) 1245
BsiHKCI CYCGRG 1 cut(s) 1227
BsiSI CCGG 2 cut(s) 264, 1158
BslI CCNNNNNNNGG 5 cut(s) 186, 187, 270, 706, 890
BsmAI GTCTC 5 cut(s) 521, 594, 972, 1509, 1570
BsmBI CGTCTC 3 cut(s) 521, 594, 1509
BsmI GAATGC 2 cut(s) 442, 1290
BsnI GGCC 1 cut(s) 1245
Bso31I GGTCTC 1 cut(s) 972
BsoBI CYCGRG 1 cut(s) 1227
Bsp1407I TGTACA 2 cut(s) 1347, 1380
BspACI CCGC 1 cut(s) 994
BspANI GGCC 1 cut(s) 1245
BspCNI CTCAG 2 cut(s) 95, 547
BspFNI CGCG 2 cut(s) 481, 532
BspLI GGNNCC 2 cut(s) 28, 992
BspMI ACCTGC 1 cut(s) 740
BspPI GGATC 5 cut(s) 360, 569, 837, 875, 1202
BspTNI GGTCTC 1 cut(s) 972
BsrDI GCAATG 2 cut(s) 756, 1350
BsrFI RCCGGY 1 cut(s) 1157
BsrGI TGTACA 2 cut(s) 1347, 1380
BsrI ACTGG 4 cut(s) 20, 30, 1121, 1321
BssAI RCCGGY 1 cut(s) 1157
BssECI CCNNGG 3 cut(s) 700, 823, 824
BssNI GRCGYC 1 cut(s) 587
BssSI CACGAG 3 cut(s) 850, 975, 1477
Bst2BI CACGAG 3 cut(s) 850, 975, 1477
Bst2UI CCWGG 4 cut(s) 670, 702, 825, 891
Bst4CI ACNGT 5 cut(s) 52, 790, 862, 1183, 1387
Bst6I CTCTTC 2 cut(s) 597, 1568
BstACI GRCGYC 1 cut(s) 587
BstAUI TGTACA 2 cut(s) 1347, 1380
BstBAI YACGTR 1 cut(s) 1187
BstC8I GCNNGC 2 cut(s) 483, 1484
BstDEI CTNAG 3 cut(s) 82, 555, 815
BstF5I GGATG 4 cut(s) 402, 645, 1376, 1619
BstFNI CGCG 2 cut(s) 481, 532
BstMAI GTCTC 5 cut(s) 521, 594, 972, 1509, 1570
BstMWI GCNNNNNNNGC 1 cut(s) 1427
BstNI CCWGG 4 cut(s) 670, 702, 825, 891
BstNSI RCATGY 2 cut(s) 908, 1621
BstSCI CCNGG 4 cut(s) 668, 700, 823, 889
BstSFI CTRYAG 1 cut(s) 1065
BstUI CGCG 2 cut(s) 481, 532
BstV1I GCAGC 5 cut(s) 286, 417, 1210, 1367, 1405
BstX2I RGATCY 4 cut(s) 202, 561, 829, 1394
BstYI RGATCY 4 cut(s) 202, 561, 829, 1394
BsuRI GGCC 1 cut(s) 1245
BtgZI GCGATG 1 cut(s) 1118
BtsCI GGATG 4 cut(s) 402, 645, 1376, 1619
BtsI GCAGTG 2 cut(s) 252, 693
BtsIMutI CAGTG 5 cut(s) 37, 252, 552, 693, 1335
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 2 cut(s) 483, 1484
Cfr10I RCCGGY 1 cut(s) 1157
Cfr13I GGNCC 3 cut(s) 503, 666, 1243
CseI GACGC 3 cut(s) 521, 538, 576
CsiI ACCWGGT 1 cut(s) 668
Csp6I GTAC 7 cut(s) 209, 680, 819, 1184, 1348, 1381, 1461
CviAII CATG 9 cut(s) 281, 740, 905, 1100, 1252, 1268, 1436, 1487, 1618
CviQI GTAC 7 cut(s) 209, 680, 819, 1184, 1348, 1381, 1461
DdeI CTNAG 3 cut(s) 82, 555, 815
Eam1104I CTCTTC 2 cut(s) 597, 1568
EarI CTCTTC 2 cut(s) 597, 1568
Eco31I GGTCTC 1 cut(s) 972
Eco47I GGWCC 2 cut(s) 503, 666
Eco88I CYCGRG 1 cut(s) 1227
EcoO109I RGGNCCY 1 cut(s) 666
EcoRII CCWGG 4 cut(s) 668, 700, 823, 889
EcoT22I ATGCAT 1 cut(s) 1619
Esp3I CGTCTC 3 cut(s) 521, 594, 1509
FaeI CATG 9 cut(s) 284, 743, 908, 1103, 1255, 1271, 1439, 1490, 1621
FatI CATG 9 cut(s) 280, 739, 904, 1099, 1251, 1267, 1435, 1486, 1617
FauNDI CATATG 1 cut(s) 1039
Fnu4HI GCNGC 5 cut(s) 275, 406, 1199, 1356, 1419
FokI GGATG 3 cut(s) 409, 652, 1383
Fsp4HI GCNGC 5 cut(s) 275, 406, 1199, 1356, 1419
FspBI CTAG 2 cut(s) 56, 200
GluI GCNGC 5 cut(s) 275, 406, 1199, 1356, 1419
GsuI CTGGAG 3 cut(s) 37, 728, 954
HaeIII GGCC 1 cut(s) 1245
HapII CCGG 2 cut(s) 264, 1158
HgaI GACGC 3 cut(s) 521, 538, 576
Hin1I GRCGYC 1 cut(s) 587
Hin1II CATG 9 cut(s) 284, 743, 908, 1103, 1255, 1271, 1439, 1490, 1621
HincII GTYRAC 2 cut(s) 925, 1549
HindII GTYRAC 2 cut(s) 925, 1549
HinfI GANTC 8 cut(s) 59, 332, 383, 495, 841, 1020, 1333, 1400
HpaII CCGG 2 cut(s) 264, 1158
HphI GGTGA 4 cut(s) 165, 388, 1147, 1579
Hpy166II GTNNAC 4 cut(s) 139, 925, 1383, 1549
Hpy188I TCNGA 5 cut(s) 85, 990, 1399, 1534, 1613
Hpy188III TCNNGA 7 cut(s) 200, 514, 536, 707, 845, 977, 1145
Hpy8I GTNNAC 4 cut(s) 139, 925, 1383, 1549
HpyAV CCTTC 7 cut(s) 37, 373, 893, 974, 998, 1299, 1351
HpyCH4III ACNGT 5 cut(s) 52, 790, 862, 1183, 1387
HpyCH4IV ACGT 2 cut(s) 1186, 1502
HpyCH4V TGCA 9 cut(s) 635, 749, 1271, 1355, 1421, 1449, 1486, 1515, 1617
HpyF10VI GCNNNNNNNGC 1 cut(s) 1427
HpyF3I CTNAG 3 cut(s) 82, 555, 815
HpySE526I ACGT 2 cut(s) 1186, 1502
Hsp92I GRCGYC 1 cut(s) 587
Hsp92II CATG 9 cut(s) 284, 743, 908, 1103, 1255, 1271, 1439, 1490, 1621
LmnI GCTCC 5 cut(s) 449, 766, 1096, 1195, 1415
Lsp1109I GCAGC 5 cut(s) 286, 417, 1210, 1367, 1405
LweI GCATC 4 cut(s) 136, 355, 1361, 1604
MabI ACCWGGT 1 cut(s) 668
MaeI CTAG 2 cut(s) 56, 200
MaeII ACGT 2 cut(s) 1186, 1502
MaeIII GTNAC 6 cut(s) 76, 691, 752, 784, 953, 1177
MboII GAAGA 7 cut(s) 259, 310, 529, 584, 1100, 1582, 1585
MflI RGATCY 4 cut(s) 202, 561, 829, 1394
MluCI AATT 8 cut(s) 70, 95, 428, 597, 1104, 1150, 1214, 1540
MluI ACGCGT 1 cut(s) 530
MlyI GAGTC 3 cut(s) 53, 326, 850
MmeI TCCRAC 1 cut(s) 1105
Mph1103I ATGCAT 1 cut(s) 1619
MroXI GAANNNNTTC 3 cut(s) 984, 1107, 1288
MseI TTAA 1 cut(s) 809
MslI CAYNNNNRTG 5 cut(s) 182, 285, 944, 1256, 1477
MspI CCGG 2 cut(s) 264, 1158
MspR9I CCNGG 4 cut(s) 670, 702, 825, 891
Mva1269I GAATGC 2 cut(s) 442, 1290
MvaI CCWGG 4 cut(s) 670, 702, 825, 891
MvnI CGCG 2 cut(s) 481, 532
MwoI GCNNNNNNNGC 1 cut(s) 1427
NdeI CATATG 1 cut(s) 1039
NlaIII CATG 9 cut(s) 284, 743, 908, 1103, 1255, 1271, 1439, 1490, 1621
NlaIV GGNNCC 2 cut(s) 28, 992
NmuCI GTSAC 4 cut(s) 691, 752, 784, 1177
NsiI ATGCAT 1 cut(s) 1619
NspI RCATGY 2 cut(s) 908, 1621
PaeR7I CTCGAG 1 cut(s) 1227
PasI CCCWGGG 1 cut(s) 824
PciI ACATGT 1 cut(s) 904
PctI GAATGC 2 cut(s) 442, 1290
PdmI GAANNNNTTC 3 cut(s) 984, 1107, 1288
PfeI GAWTC 5 cut(s) 383, 495, 1020, 1333, 1400
PflFI GACNNNGTC 1 cut(s) 670
PkrI GCNGC 5 cut(s) 276, 407, 1200, 1357, 1420
PleI GAGTC 3 cut(s) 53, 326, 849
PpsI GAGTC 3 cut(s) 53, 326, 849
Ppu21I YACGTR 1 cut(s) 1187
PpuMI RGGWCCY 1 cut(s) 666
PscI ACATGT 1 cut(s) 904
PsiI TTATAA 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 666
Psp6I CCWGG 4 cut(s) 668, 700, 823, 889
PspGI CCWGG 4 cut(s) 668, 700, 823, 889
PspN4I GGNNCC 2 cut(s) 28, 992
PspPI GGNCC 3 cut(s) 503, 666, 1243
PspPPI RGGWCCY 1 cut(s) 666
PspXI VCTCGAGB 1 cut(s) 1227
PsuI RGATCY 4 cut(s) 202, 561, 829, 1394
PsyI GACNNNGTC 1 cut(s) 670
RsaI GTAC 7 cut(s) 210, 681, 820, 1185, 1349, 1382, 1462
RsaNI GTAC 7 cut(s) 209, 680, 819, 1184, 1348, 1381, 1461
RseI CAYNNNNRTG 5 cut(s) 182, 285, 944, 1256, 1477
SaqAI TTAA 1 cut(s) 809
SatI GCNGC 5 cut(s) 275, 406, 1199, 1356, 1419
Sau96I GGNCC 3 cut(s) 503, 666, 1243
ScaI AGTACT 1 cut(s) 681
SchI GAGTC 3 cut(s) 53, 326, 850
ScrFI CCNGG 4 cut(s) 670, 702, 825, 891
SexAI ACCWGGT 1 cut(s) 668
SfaNI GCATC 4 cut(s) 136, 355, 1361, 1604
SfcI CTRYAG 1 cut(s) 1065
Sfr274I CTCGAG 1 cut(s) 1227
SgrAI CRCCGGYG 1 cut(s) 1157
SinI GGWCC 2 cut(s) 503, 666
SlaI CTCGAG 1 cut(s) 1227
SmiMI CAYNNNNRTG 5 cut(s) 182, 285, 944, 1256, 1477
SmlI CTYRAG 2 cut(s) 1227, 1508
SmoI CTYRAG 2 cut(s) 1227, 1508
Sse9I AATT 8 cut(s) 70, 95, 428, 597, 1104, 1150, 1214, 1540
SsiI CCGC 1 cut(s) 994
SspMI CTAG 2 cut(s) 56, 200
StyD4I CCNGG 4 cut(s) 668, 700, 823, 889
TaaI ACNGT 5 cut(s) 52, 790, 862, 1183, 1387
TaiI ACGT 2 cut(s) 1189, 1505
TaqI TCGA 3 cut(s) 152, 213, 1228
TasI AATT 8 cut(s) 70, 95, 428, 597, 1104, 1150, 1214, 1540
TatI WGTACW 4 cut(s) 208, 679, 1347, 1380
TfiI GAWTC 5 cut(s) 383, 495, 1020, 1333, 1400
Tru1I TTAA 1 cut(s) 809
Tru9I TTAA 1 cut(s) 809
TscAI CASTG 5 cut(s) 37, 259, 559, 700, 1335
TseFI GTSAC 4 cut(s) 691, 752, 784, 1177
TseI GCWGC 5 cut(s) 274, 405, 1198, 1355, 1418
Tsp45I GTSAC 4 cut(s) 691, 752, 784, 1177
TspDTI ATGAA 6 cut(s) 636, 656, 1116, 1121, 1314, 1424
TspGWI ACGGA 1 cut(s) 1109
TspRI CASTG 5 cut(s) 37, 259, 559, 700, 1335
Tth111I GACNNNGTC 1 cut(s) 670
VpaK11BI GGWCC 2 cut(s) 503, 666
XapI RAATTY 4 cut(s) 1104, 1150, 1214, 1540
XbaI TCTAGA 1 cut(s) 199
XceI RCATGY 2 cut(s) 908, 1621
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 1227
XmnI GAANNNNTTC 3 cut(s) 984, 1107, 1288
XspI CTAG 2 cut(s) 56, 200
ZrmI AGTACT 1 cut(s) 681
Zsp2I ATGCAT 1 cut(s) 1619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.