AT5G50410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014166
Physical Location & Seq
Reverse (-)
20528068 .. 20529885
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G50410.1

Sequence Viewer

Length: 780 bp
ATGTCGAATTCGAGTGACAAAACCCTAGAAGATGAAAAGGTGCAGCAGCAGCAATTGGAATCGGATGACAAAATCTCAAACACGAACCAACGAACAGAGCCATCTCAGGAATGGGAGACAATGGCTCGAGCTTGGGTCTCCGCTTTCCCCGACGCCAAAGCCGTTGTAAGCGCCGGCGAAGTCGAGACTTGGATCGGCACCAACTTAGATTCCTTACCGGCGGATCTCCGTCACATGCCTCGCTCCGAGATTGTAGATCGTCTCCTCTCAATCCAACATTACATGAGACCAACACCATCATCTGATCAAAACGAGCAAAATGTGGAAGCAGATCAACAACATCCAGCTCGATTTCAGAGGACTGATCAATGGTTACCAGTGTATTCGTGGTTAGAGTCATTGGATAATGGAGAGTTGGTGAAATCTAAGGATATTTCTGAATGGCTTGATGCGAATCCTGAGGTTAAACAAGAACTTTCTTCTAGGCATTCTCGTTATCATTTGACTCATTATGTCAAGAAATGTCATCTCAAGATTCTTAAAAGGAAGGAGAAGAAGGGATTAATCCGGCTGAGCAGAGCTACTGCAATGGAAGTTCACAAAGAGTTTGGCGAGAAACACCATGCTACGCTTTCGGCTGATCCCATGAGCAACATACCGAAAGACAGTGACCTCTACCGCACAAAACAGAAAGAAGCTAAGCGCAGATTTGAGATCTTGGTTGAGCTCGAGAAGAGACTGGCTCCGCATTTTGCAAAGCCTCGCATAGGAAACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

259

Amino Acids

30.13

Weight (kDa)

7.2

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014166)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50410
fragaria_vesca FvH4_5g08300
malus_domestica MD06G1142100.v1.1 MD14G1157400.v1.1
prunus_persica Prupe.5G151300_v2.0.a1 Prupe.5G151300_v2.0.a1
pyrus_communis pycom06g13190
rosa_chinensis RchiOBHm_Chr7g0190221
rosa_laevigata RLG00000004552
rosa_multiflora Rmu_sc0004886.1_g000020
rosa_rugosa Rorug06G0503000 Rorug06G0503000
rosa_samantha Rh7AG108400 Rh7BG111000 Rh7CG113400 Rh7DG111800
rosa_wichuraiana Rw7G009400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AciI CCGC 4 cut(s) 141, 221, 679, 746
AclWI GGATC 3 cut(s) 200, 231, 635
AcsI RAATTY 1 cut(s) 7
AcyI GRCGYC 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 767
AluBI AGCT 5 cut(s) 131, 347, 581, 698, 727
AluI AGCT 5 cut(s) 131, 347, 581, 698, 727
Alw21I GWGCWC 1 cut(s) 729
Alw26I GTCTC 6 cut(s) 110, 142, 179, 266, 280, 730
AlwI GGATC 3 cut(s) 200, 231, 635
Ama87I CYCGRG 2 cut(s) 126, 728
ApeKI GCWGC 3 cut(s) 43, 46, 49
ApoI RAATTY 1 cut(s) 7
AseI ATTAAT 1 cut(s) 563
AspLEI GCGC 2 cut(s) 173, 705
AsuHPI GGTGA 1 cut(s) 430
AvaI CYCGRG 2 cut(s) 126, 728
AxyI CCTNAGG 1 cut(s) 459
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 729
Bbv12I GWGCWC 1 cut(s) 729
BbvI GCAGC 3 cut(s) 55, 58, 61
BccI CCATC 2 cut(s) 109, 304
BceAI ACGGC 1 cut(s) 146
BclI TGATCA 2 cut(s) 304, 364
BcoDI GTCTC 6 cut(s) 110, 142, 179, 266, 280, 730
BfaI CTAG 2 cut(s) 26, 483
BfoI RGCGCY 1 cut(s) 174
BglII AGATCT 1 cut(s) 714
BisI GCNGC 3 cut(s) 44, 47, 50
BlpI GCTNAGC 2 cut(s) 572, 699
BlsI GCNGC 3 cut(s) 45, 48, 51
BmeT110I CYCGRG 2 cut(s) 126, 728
BmiI GGNNCC 2 cut(s) 199, 744
BmsI GCATC 1 cut(s) 439
BplI GAGNNNNNCTC 2 cut(s) 727, 759
Bpu1102I GCTNAGC 2 cut(s) 572, 699
BpuEI CTTGAG 1 cut(s) 515
BsaBI GATNNNNATC 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 2 cut(s) 142, 280
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 767
Bse118I RCCGGY 2 cut(s) 173, 217
Bse1I ACTGG 2 cut(s) 377, 744
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 1 cut(s) 594
Bse8I GATNNNNATC 1 cut(s) 453
BseGI GGATG 2 cut(s) 70, 340
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 1 cut(s) 767
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 3 cut(s) 119, 450, 563
BseNI ACTGG 2 cut(s) 377, 744
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 3 cut(s) 55, 58, 61
BsgI GTGCAG 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 729
BsiHKCI CYCGRG 2 cut(s) 126, 728
BsiSI CCGG 3 cut(s) 174, 218, 568
BslI CCNNNNNNNGG 1 cut(s) 767
BsmAI GTCTC 6 cut(s) 110, 142, 179, 266, 280, 730
BsmBI CGTCTC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 487
Bso31I GGTCTC 2 cut(s) 142, 280
BsoBI CYCGRG 2 cut(s) 126, 728
Bsp1286I GDGCHC 1 cut(s) 729
Bsp143I GATC 8 cut(s) 192, 223, 256, 304, 331, 364, 640, 714
Bsp1720I GCTNAGC 2 cut(s) 572, 699
BspACI CCGC 4 cut(s) 141, 221, 679, 746
BspCNI CTCAG 3 cut(s) 118, 451, 564
BspLI GGNNCC 2 cut(s) 199, 744
BspPI GGATC 3 cut(s) 200, 231, 635
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 2 cut(s) 142, 280
BsrDI GCAATG 1 cut(s) 594
BsrFI RCCGGY 2 cut(s) 173, 217
BsrI ACTGG 2 cut(s) 377, 744
BssAI RCCGGY 2 cut(s) 173, 217
BssMI GATC 8 cut(s) 192, 223, 256, 304, 331, 364, 640, 714
BssNI GRCGYC 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 668
Bst6I CTCTTC 1 cut(s) 728
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 6 cut(s) 105, 205, 426, 459, 572, 699
BstEII GGTNACC 1 cut(s) 372
BstENI CCTNNNNNAGG 1 cut(s) 765
BstF5I GGATG 2 cut(s) 70, 340
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 2 cut(s) 173, 705
BstKTI GATC 8 cut(s) 195, 226, 259, 307, 334, 367, 643, 717
BstMAI GTCTC 6 cut(s) 110, 142, 179, 266, 280, 730
BstMBI GATC 8 cut(s) 192, 223, 256, 304, 331, 364, 640, 714
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNSI RCATGY 1 cut(s) 238
BstPI GGTNACC 1 cut(s) 372
BstV1I GCAGC 3 cut(s) 55, 58, 61
BstX2I RGATCY 2 cut(s) 223, 714
BstYI RGATCY 2 cut(s) 223, 714
Bsu36I CCTNAGG 1 cut(s) 459
BtsCI GGATG 2 cut(s) 70, 340
BtsIMutI CAGTG 2 cut(s) 384, 673
Cac8I GCNNGC 1 cut(s) 175
CfoI GCGC 2 cut(s) 173, 705
Cfr10I RCCGGY 2 cut(s) 173, 217
CseI GACGC 1 cut(s) 161
CviAII CATG 4 cut(s) 235, 283, 623, 646
DdeI CTNAG 6 cut(s) 105, 205, 426, 459, 572, 699
DpnI GATC 8 cut(s) 194, 225, 258, 306, 333, 366, 642, 716
DpnII GATC 8 cut(s) 192, 223, 256, 304, 331, 364, 640, 714
Eam1104I CTCTTC 1 cut(s) 728
EarI CTCTTC 1 cut(s) 728
EciI GGCGGA 1 cut(s) 236
Ecl136II GAGCTC 1 cut(s) 727
Eco24I GRGCYC 1 cut(s) 729
Eco31I GGTCTC 2 cut(s) 142, 280
Eco53kI GAGCTC 1 cut(s) 727
Eco81I CCTNAGG 1 cut(s) 459
Eco88I CYCGRG 2 cut(s) 126, 728
Eco91I GGTNACC 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 727
EcoNI CCTNNNNNAGG 1 cut(s) 765
EcoO65I GGTNACC 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 729
Esp3I CGTCTC 1 cut(s) 266
FaeI CATG 4 cut(s) 238, 286, 626, 649
FaiI YATR 7 cut(s) 236, 284, 513, 624, 647, 656, 767
FatI CATG 4 cut(s) 234, 282, 622, 645
FbaI TGATCA 2 cut(s) 304, 364
Fnu4HI GCNGC 3 cut(s) 44, 47, 50
FokI GGATG 2 cut(s) 77, 327
FriOI GRGCYC 1 cut(s) 729
Fsp4HI GCNGC 3 cut(s) 44, 47, 50
FspBI CTAG 2 cut(s) 26, 483
GlaI GCGC 2 cut(s) 172, 704
GluI GCNGC 3 cut(s) 44, 47, 50
HaeII RGCGCY 1 cut(s) 174
HapII CCGG 3 cut(s) 174, 218, 568
HgaI GACGC 1 cut(s) 161
HhaI GCGC 2 cut(s) 173, 705
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 4 cut(s) 238, 286, 626, 649
Hin6I GCGC 2 cut(s) 171, 703
HinP1I GCGC 2 cut(s) 171, 703
HinfI GANTC 6 cut(s) 59, 209, 395, 454, 505, 535
HpaII CCGG 3 cut(s) 174, 218, 568
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 1 cut(s) 598
Hpy188I TCNGA 5 cut(s) 64, 247, 304, 357, 439
Hpy188III TCNNGA 6 cut(s) 107, 184, 458, 517, 532, 730
Hpy8I GTNNAC 1 cut(s) 598
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 2 cut(s) 541, 550
HpyCH4III ACNGT 1 cut(s) 668
HpyCH4V TGCA 3 cut(s) 43, 587, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 6 cut(s) 105, 205, 426, 459, 572, 699
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 4 cut(s) 238, 286, 626, 649
HspAI GCGC 2 cut(s) 171, 703
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
Ksp22I TGATCA 2 cut(s) 304, 364
Kzo9I GATC 8 cut(s) 192, 223, 256, 304, 331, 364, 640, 714
LmnI GCTCC 2 cut(s) 248, 748
LpnPI CCDG 8 cut(s) 92, 187, 231, 357, 390, 471, 581, 725
Lsp1109I GCAGC 3 cut(s) 55, 58, 61
LweI GCATC 1 cut(s) 439
MaeI CTAG 2 cut(s) 26, 483
MaeIII GTNAC 4 cut(s) 14, 230, 372, 668
MalI GATC 8 cut(s) 194, 225, 258, 306, 333, 366, 642, 716
MboI GATC 8 cut(s) 192, 223, 256, 304, 331, 364, 640, 714
MboII GAAGA 4 cut(s) 41, 471, 565, 745
MfeI CAATTG 1 cut(s) 53
MflI RGATCY 2 cut(s) 223, 714
MhlI GDGCHC 1 cut(s) 729
MluCI AATT 2 cut(s) 7, 53
MlyI GAGTC 2 cut(s) 404, 499
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 6 cut(s) 249, 275, 351, 454, 683, 771
MreI CGCCGGCG 1 cut(s) 173
MroNI GCCGGC 1 cut(s) 173
MseI TTAA 3 cut(s) 465, 540, 563
MspI CCGG 3 cut(s) 174, 218, 568
MunI CAATTG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 487
MwoI GCNNNNNNNGC 1 cut(s) 49
NaeI GCCGGC 1 cut(s) 175
NdeII GATC 8 cut(s) 192, 223, 256, 304, 331, 364, 640, 714
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 4 cut(s) 238, 286, 626, 649
NlaIV GGNNCC 2 cut(s) 199, 744
NmuCI GTSAC 3 cut(s) 14, 230, 668
NspI RCATGY 1 cut(s) 238
PaeR7I CTCGAG 2 cut(s) 126, 728
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 487
PdiI GCCGGC 1 cut(s) 175
PfeI GAWTC 4 cut(s) 59, 209, 454, 535
PkrI GCNGC 3 cut(s) 45, 48, 51
PleI GAGTC 2 cut(s) 403, 499
PpsI GAGTC 2 cut(s) 403, 499
PshBI ATTAAT 1 cut(s) 563
Psp124BI GAGCTC 1 cut(s) 729
PspEI GGTNACC 1 cut(s) 372
PspN4I GGNNCC 2 cut(s) 199, 744
PspXI VCTCGAGB 1 cut(s) 126
PsuI RGATCY 2 cut(s) 223, 714
SacI GAGCTC 1 cut(s) 729
SaqAI TTAA 3 cut(s) 465, 540, 563
SatI GCNGC 3 cut(s) 44, 47, 50
Sau3AI GATC 8 cut(s) 192, 223, 256, 304, 331, 364, 640, 714
SchI GAGTC 2 cut(s) 404, 499
SduI GDGCHC 1 cut(s) 729
SetI ASST 8 cut(s) 42, 133, 349, 465, 583, 675, 700, 729
SfaNI GCATC 1 cut(s) 439
Sfr274I CTCGAG 2 cut(s) 126, 728
SgrAI CRCCGGYG 1 cut(s) 173
SlaI CTCGAG 2 cut(s) 126, 728
SmlI CTYRAG 3 cut(s) 126, 530, 728
SmoI CTYRAG 3 cut(s) 126, 530, 728
Sse9I AATT 2 cut(s) 7, 53
SsiI CCGC 4 cut(s) 141, 221, 679, 746
SspMI CTAG 2 cut(s) 26, 483
SstI GAGCTC 1 cut(s) 729
TaaI ACNGT 1 cut(s) 668
TaqI TCGA 6 cut(s) 5, 11, 127, 183, 349, 729
TasI AATT 2 cut(s) 7, 53
TfiI GAWTC 4 cut(s) 59, 209, 454, 535
Tru1I TTAA 3 cut(s) 465, 540, 563
Tru9I TTAA 3 cut(s) 465, 540, 563
TscAI CASTG 2 cut(s) 384, 673
TseFI GTSAC 3 cut(s) 14, 230, 668
TseI GCWGC 3 cut(s) 43, 46, 49
Tsp45I GTSAC 3 cut(s) 14, 230, 668
TspDTI ATGAA 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 2 cut(s) 384, 673
VspI ATTAAT 1 cut(s) 563
XagI CCTNNNNNAGG 1 cut(s) 765
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 238
XcmI CCANNNNNNNNNTGG 2 cut(s) 108, 384
XhoI CTCGAG 2 cut(s) 126, 728
XspI CTAG 2 cut(s) 26, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.