Prupe.5G151300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014166
Physical Location & Seq
Forward (+)
13699581 .. 13701867
2287 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G151300.2

Sequence Viewer

Length: 879 bp
ATGTCAAACTCCGCAGAGCAAACCCTAGCAATAGTAGCAGCAGCAACCGATGGAGAAGAAGCGGAACAGCGAGTTTCTGATAACGACAACACCAGCGAGCAATCCCAAGAATGGGAGACCATGGCTCGAGCTTGGCTCTGCTCGTTCCCCGAGGCCAAAGCTGTGTCCATGGACGAGGTCGAAGCCTGGATCGACTCCAACTTTGACTTCATCCCCGAAGGCATCAAATCCATGCCTCGCCCTGACCTCTGTCAGCGCCTTATTTCCATTCAGAATTGCATGAGACTCCCCAATCAGGAAGAAAAGGAAGAAAACCAAGGTGATATTCCACATGCTCGATTCCAACGAACCGATCAATGGAGACCGGTTTATATTTGGTTGGAATCTTTGGATAAAGATGAGGTGGTTAAGTCCAAAGATATATCTGACTGGCTAACTGAGAATCCAGATATACAAGAACAGTTGTGCTCTAGGCATTCTCGGTATCATTTGATGCATTACATCAAGAAGTGCCATATGAAGATACTAAAGAGGCGGGAAAAGAAGAAGGTATTGAATACTTCTTGTTTTAGCTCAATTAGCCTAGAAATTTTCAAGCGTCTGTCTGAAGATGCAGATGCTTCCTCAATTTGGACCACATCAGGTGTCCAGCAGCCTGACACACCAGCCCCTCTAAAGGTTCACAAAGATGTGTTGATGAAACAGCCAGCTCAGCTGCCATCTCCACTCTCTGTTTGCAATTCATTGATCAATGTACCAAAAGATAGTGATGTATATTTGACAAAACGAAAGGAAGCACTTCAGAAATACGAGATCTTAGCGGAGTTGGAGAAGCTGCTTGCCCCCACCTTTTTGAAACGTGAAGATGGAAACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

293

Amino Acids

33.64

Weight (kDa)

5.34

Isoelectric Point (pI)

55.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014166)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50410
fragaria_vesca FvH4_5g08300
malus_domestica MD06G1142100.v1.1 MD14G1157400.v1.1
prunus_persica Prupe.5G151300_v2.0.a1 Prupe.5G151300_v2.0.a1
pyrus_communis pycom06g13190
rosa_chinensis RchiOBHm_Chr7g0190221
rosa_laevigata RLG00000004552
rosa_multiflora Rmu_sc0004886.1_g000020
rosa_rugosa Rorug06G0503000 Rorug06G0503000
rosa_samantha Rh7AG108400 Rh7BG111000 Rh7CG113400 Rh7DG111800
rosa_wichuraiana Rw7G009400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 12, 62, 535, 821
AclWI GGATC 1 cut(s) 197
AcsI RAATTY 1 cut(s) 588
AcuI CTGAAG 2 cut(s) 627, 785
AfaI GTAC 1 cut(s) 756
AfiI CCNNNNNNNGG 6 cut(s) 111, 112, 295, 357, 630, 676
AgeI ACCGGT 1 cut(s) 364
AgsI TTSAA 3 cut(s) 556, 595, 856
AjnI CCWGG 1 cut(s) 185
AjuI GAANNNNNNNTTGG 4 cut(s) 191, 223, 309, 341
AluBI AGCT 6 cut(s) 131, 161, 573, 710, 715, 835
AluI AGCT 6 cut(s) 131, 161, 573, 710, 715, 835
Alw21I GWGCWC 1 cut(s) 470
Alw26I GTCTC 3 cut(s) 110, 277, 355
AlwI GGATC 1 cut(s) 197
Ama87I CYCGRG 2 cut(s) 126, 149
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 5 cut(s) 38, 41, 652, 715, 835
ApoI RAATTY 1 cut(s) 588
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AsiGI ACCGGT 1 cut(s) 364
Asp700I GAANNNNTTC 1 cut(s) 798
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 633
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 2 cut(s) 126, 149
AvaII GGWCC 1 cut(s) 633
Bbv12I GWGCWC 1 cut(s) 470
BbvI GCAGC 5 cut(s) 50, 53, 664, 702, 822
BccI CCATC 3 cut(s) 44, 727, 860
BciT130I CCWGG 1 cut(s) 187
BclI TGATCA 1 cut(s) 747
BcoDI GTCTC 3 cut(s) 110, 277, 355
BfaI CTAG 3 cut(s) 26, 471, 584
BfoI RGCGCY 1 cut(s) 259
BglII AGATCT 1 cut(s) 813
BisI GCNGC 5 cut(s) 39, 42, 653, 716, 836
BlpI GCTNAGC 1 cut(s) 711
BlsI GCNGC 5 cut(s) 40, 43, 654, 717, 837
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 633
BmeT110I CYCGRG 2 cut(s) 126, 149
BmgT120I GGNCC 1 cut(s) 633
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 4 cut(s) 231, 483, 601, 607
BoxI GACNNNNGTC 1 cut(s) 249
BplI GAGNNNNNCTC 2 cut(s) 120, 152
Bpu1102I GCTNAGC 1 cut(s) 711
BsaI GGTCTC 2 cut(s) 110, 355
BsaJI CCNNGG 4 cut(s) 120, 150, 168, 316
BsaWI WCCGGW 1 cut(s) 364
Bsc4I CCNNNNNNNGG 6 cut(s) 111, 112, 295, 357, 630, 676
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 434
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 4 cut(s) 120, 150, 168, 316
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 6 cut(s) 111, 112, 295, 357, 630, 676
BseMII CTCAG 2 cut(s) 429, 725
BseNI ACTGG 1 cut(s) 434
BseXI GCAGC 5 cut(s) 50, 53, 664, 702, 822
BshFI GGCC 1 cut(s) 155
BshTI ACCGGT 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 470
BsiHKCI CYCGRG 2 cut(s) 126, 149
BsiSI CCGG 1 cut(s) 365
BslI CCNNNNNNNGG 6 cut(s) 111, 112, 295, 357, 630, 676
BsmAI GTCTC 3 cut(s) 110, 277, 355
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 1 cut(s) 155
Bso31I GGTCTC 2 cut(s) 110, 355
BsoBI CYCGRG 2 cut(s) 126, 149
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 4 cut(s) 189, 352, 747, 813
Bsp1720I GCTNAGC 1 cut(s) 711
Bsp19I CCATGG 2 cut(s) 120, 168
BspACI CCGC 4 cut(s) 12, 62, 535, 821
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 2 cut(s) 430, 724
BspPI GGATC 1 cut(s) 197
BspTNI GGTCTC 2 cut(s) 110, 355
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 1 cut(s) 434
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 4 cut(s) 120, 150, 168, 316
BssMI GATC 4 cut(s) 189, 352, 747, 813
BssT1I CCWWGG 3 cut(s) 120, 168, 316
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 462
BstC8I GCNNGC 3 cut(s) 98, 708, 840
BstDEI CTNAG 3 cut(s) 438, 711, 817
BstDSI CCRYGG 2 cut(s) 120, 168
BstF5I GGATG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 4 cut(s) 192, 355, 750, 816
BstMAI GTCTC 3 cut(s) 110, 277, 355
BstMBI GATC 4 cut(s) 189, 352, 747, 813
BstMWI GCNNNNNNNGC 3 cut(s) 35, 579, 712
BstNI CCWGG 1 cut(s) 187
BstNSI RCATGY 1 cut(s) 335
BstPAI GACNNNNGTC 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 185
BstV1I GCAGC 5 cut(s) 50, 53, 664, 702, 822
BstX2I RGATCY 1 cut(s) 813
BstYI RGATCY 1 cut(s) 813
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 2 cut(s) 120, 168
BtsCI GGATG 1 cut(s) 210
Cac8I GCNNGC 3 cut(s) 98, 708, 840
CfoI GCGC 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 1 cut(s) 633
CseI GACGC 1 cut(s) 587
Csp6I GTAC 1 cut(s) 755
CspAI ACCGGT 1 cut(s) 364
CviAII CATG 5 cut(s) 121, 169, 232, 280, 332
CviQI GTAC 1 cut(s) 755
DdeI CTNAG 3 cut(s) 438, 711, 817
DpnI GATC 4 cut(s) 191, 354, 749, 815
DpnII GATC 4 cut(s) 189, 352, 747, 813
Eco130I CCWWGG 3 cut(s) 120, 168, 316
Eco31I GGTCTC 2 cut(s) 110, 355
Eco47I GGWCC 1 cut(s) 633
Eco57I CTGAAG 2 cut(s) 627, 785
Eco88I CYCGRG 2 cut(s) 126, 149
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 3 cut(s) 120, 168, 316
EcoT22I ATGCAT 1 cut(s) 498
ErhI CCWWGG 3 cut(s) 120, 168, 316
FaeI CATG 5 cut(s) 124, 172, 235, 283, 335
FatI CATG 5 cut(s) 120, 168, 231, 279, 331
FauI CCCGC 1 cut(s) 528
FauNDI CATATG 1 cut(s) 516
FbaI TGATCA 1 cut(s) 747
Fnu4HI GCNGC 5 cut(s) 39, 42, 653, 716, 836
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 5 cut(s) 39, 42, 653, 716, 836
FspBI CTAG 3 cut(s) 26, 471, 584
GlaI GCGC 1 cut(s) 257
GluI GCNGC 5 cut(s) 39, 42, 653, 716, 836
HaeII RGCGCY 1 cut(s) 259
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 365
HgaI GACGC 1 cut(s) 587
HhaI GCGC 1 cut(s) 258
Hin1II CATG 5 cut(s) 124, 172, 235, 283, 335
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 5 cut(s) 194, 285, 339, 383, 442
HpaII CCGG 1 cut(s) 365
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 5 cut(s) 79, 273, 427, 607, 804
Hpy188III TCNNGA 3 cut(s) 296, 446, 505
Hpy8I GTNNAC 1 cut(s) 682
HpyAV CCTTC 2 cut(s) 212, 541
HpyCH4III ACNGT 1 cut(s) 462
HpyCH4IV ACGT 1 cut(s) 859
HpyCH4V TGCA 4 cut(s) 279, 496, 614, 738
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 579, 712
HpyF3I CTNAG 3 cut(s) 438, 711, 817
HpySE526I ACGT 1 cut(s) 859
Hsp92II CATG 5 cut(s) 124, 172, 235, 283, 335
HspAI GCGC 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 747
Kzo9I GATC 4 cut(s) 189, 352, 747, 813
Lsp1109I GCAGC 5 cut(s) 50, 53, 664, 702, 822
LweI GCATC 4 cut(s) 231, 483, 601, 607
MaeI CTAG 3 cut(s) 26, 471, 584
MaeII ACGT 1 cut(s) 859
MalI GATC 4 cut(s) 191, 354, 749, 815
MboI GATC 4 cut(s) 189, 352, 747, 813
MboII GAAGA 7 cut(s) 68, 311, 320, 532, 556, 620, 875
MflI RGATCY 1 cut(s) 813
MhlI GDGCHC 1 cut(s) 470
MluCI AATT 5 cut(s) 274, 576, 588, 627, 739
MlyI GAGTC 2 cut(s) 188, 279
MmeI TCCRAC 4 cut(s) 222, 360, 367, 807
MnlI CCTC 8 cut(s) 145, 169, 246, 257, 394, 525, 634, 681
Mph1103I ATGCAT 1 cut(s) 498
MroXI GAANNNNTTC 1 cut(s) 798
MseI TTAA 1 cut(s) 408
MslI CAYNNNNRTG 1 cut(s) 687
MspA1I CMGCKG 1 cut(s) 715
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 187
Mva1269I GAATGC 1 cut(s) 475
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 3 cut(s) 35, 579, 712
NcoI CCATGG 2 cut(s) 120, 168
NdeI CATATG 1 cut(s) 516
NdeII GATC 4 cut(s) 189, 352, 747, 813
NlaIII CATG 5 cut(s) 124, 172, 235, 283, 335
NsiI ATGCAT 1 cut(s) 498
NspI RCATGY 1 cut(s) 335
PaeR7I CTCGAG 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 343
PctI GAATGC 1 cut(s) 475
PdmI GAANNNNTTC 1 cut(s) 798
PfeI GAWTC 3 cut(s) 339, 383, 442
PflFI GACNNNGTC 1 cut(s) 176
PinAI ACCGGT 1 cut(s) 364
PkrI GCNGC 5 cut(s) 40, 43, 654, 717, 837
PleI GAGTC 2 cut(s) 188, 279
PpsI GAGTC 2 cut(s) 188, 279
PshAI GACNNNNGTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspPI GGNCC 1 cut(s) 633
PspXI VCTCGAGB 1 cut(s) 126
PsuI RGATCY 1 cut(s) 813
PsyI GACNNNGTC 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 715
RsaI GTAC 1 cut(s) 756
RsaNI GTAC 1 cut(s) 755
RseI CAYNNNNRTG 1 cut(s) 687
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 5 cut(s) 39, 42, 653, 716, 836
Sau3AI GATC 4 cut(s) 189, 352, 747, 813
Sau96I GGNCC 1 cut(s) 633
SchI GAGTC 2 cut(s) 188, 279
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 1 cut(s) 470
SfaNI GCATC 4 cut(s) 231, 483, 601, 607
Sfr274I CTCGAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 633
SlaI CTCGAG 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 5 cut(s) 274, 576, 588, 627, 739
SsiI CCGC 4 cut(s) 12, 62, 535, 821
SspMI CTAG 3 cut(s) 26, 471, 584
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 3 cut(s) 120, 168, 316
TaaI ACNGT 1 cut(s) 462
TaiI ACGT 1 cut(s) 862
TaqI TCGA 4 cut(s) 127, 180, 192, 337
TasI AATT 5 cut(s) 274, 576, 588, 627, 739
TfiI GAWTC 3 cut(s) 339, 383, 442
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TseI GCWGC 5 cut(s) 38, 41, 652, 715, 835
TspDTI ATGAA 4 cut(s) 199, 533, 713, 732
Tth111I GACNNNGTC 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 633
XapI RAATTY 1 cut(s) 588
XceI RCATGY 1 cut(s) 335
XhoI CTCGAG 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 798
XspI CTAG 3 cut(s) 26, 471, 584
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.