RLG00000004552

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014166
Physical Location & Seq
Reverse (-)
60222551 .. 60224360
1810 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004552

Sequence Viewer

Length: 771 bp
ATGTCGAGCCCTCCTGCAGAGGAAACCCTAGCAGAACCAGCAGCAGCATCTGAAGAAGAAGAAGAAGCAGAGCAGAAGGTCTCCGACACCGACAACAGCGAGCAATCGCAAGAATGGGAGACCATGGCTCGAGCTTGGCTCTCGTCTTTCCCCGAGGCCAAAGCTGTGTCCATGGACGAGGTCGAGGCCTGGATCGACTCCAACTTCGATTTCATACCTGAAGGCATCAAATCCATGCCTCGCCTTGACGTCTGTCACCGCCTCATCGCTATCCAGAACTGCATGAGGTCCGCCAATCAGGAGAAAGAAGAAGATCAAGGTGATATTCCACATGCTCGATTTCAACGCACTGATCAGTGGAGACCGGTTTATATTTGGTTAGAATCTTTGAATAGAGACGACGTTGTGAAATCCAGAGATATAAGTGAGTGGCTAACTTCGAACCCGAAAATCCAAGAGTACTTGTGCTCTAGGCATTCTCGGTATCATTTGATGCACTACATCAAGAAATGCCATATGAAGATTCTGAAGAGGCGGGAAAGGAAGAAGGGTGTCCAGCAGTCTGACACACCAGCGTCTCTGAAGGTTCACAAAGATGTGGAAATGAAAAGAGAAGCTCCACTAGCCTGCACTAATTTAATCAATGTACCTCAAGATAGTGATCTATTTATGATGAAACGAAAGGAAGCACTTGAGAAATTTCAGATCTTAGTGGAGCTTGAGAAGCTGCTTGCCCCTACGTTCTTAAAGCGTGGAGATGGAAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

257

Amino Acids

29.81

Weight (kDa)

5.52

Isoelectric Point (pI)

68.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014166)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50410
fragaria_vesca FvH4_5g08300
malus_domestica MD06G1142100.v1.1 MD14G1157400.v1.1
prunus_persica Prupe.5G151300_v2.0.a1 Prupe.5G151300_v2.0.a1
pyrus_communis pycom06g13190
rosa_chinensis RchiOBHm_Chr7g0190221
rosa_laevigata RLG00000004552
rosa_multiflora Rmu_sc0004886.1_g000020
rosa_rugosa Rorug06G0503000 Rorug06G0503000
rosa_samantha Rh7AG108400 Rh7BG111000 Rh7CG113400 Rh7DG111800
rosa_wichuraiana Rw7G009400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 252
AciI CCGC 3 cut(s) 259, 291, 535
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 1 cut(s) 698
AcuI CTGAAG 4 cut(s) 72, 240, 548, 602
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 2 cut(s) 461, 648
AgeI ACCGGT 1 cut(s) 364
AgsI TTSAA 2 cut(s) 344, 391
AjnI CCWGG 1 cut(s) 188
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 5 cut(s) 134, 164, 617, 718, 727
AluI AGCT 5 cut(s) 134, 164, 617, 718, 727
Alw21I GWGCWC 1 cut(s) 470
Alw26I GTCTC 5 cut(s) 85, 113, 355, 390, 582
AlwI GGATC 1 cut(s) 200
AlwNI CAGNNNCTG 1 cut(s) 50
Ama87I CYCGRG 2 cut(s) 129, 152
AoxI GGCC 2 cut(s) 156, 186
ApeKI GCWGC 3 cut(s) 41, 44, 727
ApoI RAATTY 1 cut(s) 698
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
AsiGI ACCGGT 1 cut(s) 364
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 2 cut(s) 248, 332
AsuII TTCGAA 1 cut(s) 440
AvaI CYCGRG 2 cut(s) 129, 152
AvaII GGWCC 1 cut(s) 288
BanII GRGCYC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 470
BbvI GCAGC 3 cut(s) 53, 56, 714
BccI CCATC 1 cut(s) 752
BciT130I CCWGG 1 cut(s) 190
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 5 cut(s) 85, 113, 355, 390, 582
BfaI CTAG 3 cut(s) 29, 471, 623
BfmI CTRYAG 1 cut(s) 15
BglII AGATCT 1 cut(s) 705
BisI GCNGC 3 cut(s) 42, 45, 728
BlsI GCNGC 3 cut(s) 43, 46, 729
BmcAI AGTACT 1 cut(s) 461
Bme1390I CCNGG 1 cut(s) 190
Bme18I GGWCC 1 cut(s) 288
BmeT110I CYCGRG 2 cut(s) 129, 152
BmgT120I GGNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 3 cut(s) 56, 234, 483
BoxI GACNNNNGTC 1 cut(s) 252
BplI GAGNNNNNCTC 2 cut(s) 123, 155
Bpu14I TTCGAA 1 cut(s) 440
BpuEI CTTGAG 3 cut(s) 636, 713, 740
BsaBI GATNNNNATC 1 cut(s) 660
BsaHI GRCGYC 1 cut(s) 249
BsaI GGTCTC 3 cut(s) 85, 113, 355
BsaJI CCNNGG 3 cut(s) 123, 153, 171
BsaWI WCCGGW 1 cut(s) 364
Bse118I RCCGGY 1 cut(s) 364
Bse8I GATNNNNATC 1 cut(s) 660
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 3 cut(s) 123, 153, 171
BseJI GATNNNNATC 1 cut(s) 660
BseXI GCAGC 3 cut(s) 53, 56, 714
BsgI GTGCAG 1 cut(s) 613
BshFI GGCC 2 cut(s) 158, 188
BshTI ACCGGT 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 470
BsiHKCI CYCGRG 2 cut(s) 129, 152
BsiSI CCGG 1 cut(s) 365
BsmAI GTCTC 5 cut(s) 85, 113, 355, 390, 582
BsmBI CGTCTC 2 cut(s) 390, 582
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 2 cut(s) 158, 188
Bso31I GGTCTC 3 cut(s) 85, 113, 355
BsoBI CYCGRG 2 cut(s) 129, 152
Bsp119I TTCGAA 1 cut(s) 440
Bsp1286I GDGCHC 2 cut(s) 11, 470
Bsp143I GATC 5 cut(s) 192, 313, 352, 661, 705
Bsp19I CCATGG 2 cut(s) 123, 171
BspACI CCGC 3 cut(s) 259, 291, 535
BspANI GGCC 2 cut(s) 158, 188
BspMAI CTGCAG 1 cut(s) 19
BspPI GGATC 1 cut(s) 200
BspT104I TTCGAA 1 cut(s) 440
BspTNI GGTCTC 3 cut(s) 85, 113, 355
BsrFI RCCGGY 1 cut(s) 364
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 3 cut(s) 123, 153, 171
BssMI GATC 5 cut(s) 192, 313, 352, 661, 705
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 2 cut(s) 123, 171
Bst2UI CCWGG 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 524
BstACI GRCGYC 1 cut(s) 249
BstBI TTCGAA 1 cut(s) 440
BstC8I GCNNGC 3 cut(s) 101, 628, 732
BstDEI CTNAG 1 cut(s) 709
BstDSI CCRYGG 2 cut(s) 123, 171
BstKTI GATC 5 cut(s) 195, 316, 355, 664, 708
BstMAI GTCTC 5 cut(s) 85, 113, 355, 390, 582
BstMBI GATC 5 cut(s) 192, 313, 352, 661, 705
BstMWI GCNNNNNNNGC 3 cut(s) 38, 623, 724
BstNI CCWGG 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 335
BstPAI GACNNNNGTC 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 53, 56, 714
BstX2I RGATCY 1 cut(s) 705
BstYI RGATCY 1 cut(s) 705
BsuRI GGCC 2 cut(s) 158, 188
BtgI CCRYGG 2 cut(s) 123, 171
BtgZI GCGATG 1 cut(s) 250
BtsIMutI CAGTG 2 cut(s) 348, 362
Cac8I GCNNGC 3 cut(s) 101, 628, 732
CaiI CAGNNNCTG 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 1 cut(s) 288
CseI GACGC 1 cut(s) 564
Csp6I GTAC 2 cut(s) 460, 647
CspAI ACCGGT 1 cut(s) 364
CviAII CATG 5 cut(s) 124, 172, 235, 283, 332
CviQI GTAC 2 cut(s) 460, 647
DdeI CTNAG 1 cut(s) 709
DpnI GATC 5 cut(s) 194, 315, 354, 663, 707
DpnII GATC 5 cut(s) 192, 313, 352, 661, 705
Eam1104I CTCTTC 1 cut(s) 524
EarI CTCTTC 1 cut(s) 524
EciI GGCGGA 1 cut(s) 280
Eco130I CCWWGG 2 cut(s) 123, 171
Eco147I AGGCCT 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 11
Eco31I GGTCTC 3 cut(s) 85, 113, 355
Eco47I GGWCC 1 cut(s) 288
Eco57I CTGAAG 4 cut(s) 72, 240, 548, 602
Eco88I CYCGRG 2 cut(s) 129, 152
EcoRII CCWGG 1 cut(s) 188
EcoT14I CCWWGG 2 cut(s) 123, 171
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 2 cut(s) 123, 171
Esp3I CGTCTC 2 cut(s) 390, 582
FaeI CATG 5 cut(s) 127, 175, 238, 286, 335
FatI CATG 5 cut(s) 123, 171, 234, 282, 331
FauI CCCGC 1 cut(s) 528
FauNDI CATATG 1 cut(s) 516
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 3 cut(s) 42, 45, 728
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 3 cut(s) 42, 45, 728
FspBI CTAG 3 cut(s) 29, 471, 623
GluI GCNGC 3 cut(s) 42, 45, 728
HaeIII GGCC 2 cut(s) 158, 188
HapII CCGG 1 cut(s) 365
HgaI GACGC 1 cut(s) 564
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 5 cut(s) 127, 175, 238, 286, 335
HinfI GANTC 3 cut(s) 197, 383, 523
HpaII CCGG 1 cut(s) 365
HphI GGTGA 2 cut(s) 248, 332
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 6 cut(s) 52, 85, 528, 565, 582, 705
Hpy188III TCNNGA 5 cut(s) 274, 299, 414, 505, 653
Hpy8I GTNNAC 1 cut(s) 589
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 4 cut(s) 70, 215, 541, 577
HpyCH4IV ACGT 3 cut(s) 249, 402, 740
HpyCH4V TGCA 4 cut(s) 17, 282, 496, 630
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 623, 724
HpyF3I CTNAG 1 cut(s) 709
HpySE526I ACGT 3 cut(s) 249, 402, 740
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 5 cut(s) 127, 175, 238, 286, 335
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 5 cut(s) 192, 313, 352, 661, 705
LmnI GCTCC 2 cut(s) 622, 715
Lsp1109I GCAGC 3 cut(s) 53, 56, 714
LweI GCATC 3 cut(s) 56, 234, 483
MaeI CTAG 3 cut(s) 29, 471, 623
MaeII ACGT 3 cut(s) 249, 402, 740
MaeIII GTNAC 1 cut(s) 254
MalI GATC 5 cut(s) 194, 315, 354, 663, 707
MboI GATC 5 cut(s) 192, 313, 352, 661, 705
MboII GAAGA 9 cut(s) 65, 68, 71, 74, 320, 323, 532, 541, 556
MflI RGATCY 1 cut(s) 705
MhlI GDGCHC 2 cut(s) 11, 470
MluCI AATT 2 cut(s) 634, 698
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 2 cut(s) 108, 225
MseI TTAA 2 cut(s) 638, 746
MslI CAYNNNNRTG 1 cut(s) 594
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 190
Mva1269I GAATGC 1 cut(s) 475
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 3 cut(s) 38, 623, 724
NcoI CCATGG 2 cut(s) 123, 171
NdeI CATATG 1 cut(s) 516
NdeII GATC 5 cut(s) 192, 313, 352, 661, 705
NlaIII CATG 5 cut(s) 127, 175, 238, 286, 335
NmuCI GTSAC 1 cut(s) 254
NspI RCATGY 1 cut(s) 335
NspV TTCGAA 1 cut(s) 440
PaeR7I CTCGAG 1 cut(s) 129
PceI AGGCCT 1 cut(s) 188
PctI GAATGC 1 cut(s) 475
PfeI GAWTC 2 cut(s) 383, 523
PflFI GACNNNGTC 1 cut(s) 179
PinAI ACCGGT 1 cut(s) 364
PkrI GCNGC 3 cut(s) 43, 46, 729
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PshAI GACNNNNGTC 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspPI GGNCC 1 cut(s) 288
PspXI VCTCGAGB 1 cut(s) 129
PstI CTGCAG 1 cut(s) 19
PstNI CAGNNNCTG 1 cut(s) 50
PsuI RGATCY 1 cut(s) 705
PsyI GACNNNGTC 1 cut(s) 179
RsaI GTAC 2 cut(s) 461, 648
RsaNI GTAC 2 cut(s) 460, 647
RseI CAYNNNNRTG 1 cut(s) 594
SaqAI TTAA 2 cut(s) 638, 746
SatI GCNGC 3 cut(s) 42, 45, 728
Sau3AI GATC 5 cut(s) 192, 313, 352, 661, 705
Sau96I GGNCC 1 cut(s) 288
ScaI AGTACT 1 cut(s) 461
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 2 cut(s) 11, 470
SfaNI GCATC 3 cut(s) 56, 234, 483
SfcI CTRYAG 1 cut(s) 15
Sfr274I CTCGAG 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 440
SinI GGWCC 1 cut(s) 288
SlaI CTCGAG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 4 cut(s) 129, 651, 692, 719
SmoI CTYRAG 4 cut(s) 129, 651, 692, 719
Sse9I AATT 2 cut(s) 634, 698
SseBI AGGCCT 1 cut(s) 188
SsiI CCGC 3 cut(s) 259, 291, 535
SspMI CTAG 3 cut(s) 29, 471, 623
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 188
StyI CCWWGG 2 cut(s) 123, 171
TaiI ACGT 3 cut(s) 252, 405, 743
TaqI TCGA 7 cut(s) 5, 130, 183, 195, 207, 337, 440
TasI AATT 2 cut(s) 634, 698
TatI WGTACW 1 cut(s) 459
TfiI GAWTC 2 cut(s) 383, 523
Tru1I TTAA 2 cut(s) 638, 746
Tru9I TTAA 2 cut(s) 638, 746
TscAI CASTG 2 cut(s) 355, 362
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 3 cut(s) 41, 44, 727
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 4 cut(s) 202, 533, 620, 689
TspRI CASTG 2 cut(s) 355, 362
Tth111I GACNNNGTC 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 288
XapI RAATTY 1 cut(s) 698
XceI RCATGY 1 cut(s) 335
XhoI CTCGAG 1 cut(s) 129
XspI CTAG 3 cut(s) 29, 471, 623
ZraI GACGTC 1 cut(s) 250
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.