pycom06g13190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0014166
Physical Location & Seq
Forward (+)
18236304 .. 18238421
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g13190.2

Sequence Viewer

Length: 1020 bp
ATGTCACCATCAAAACGACGTCGTTTCCGCCTCCGGTTTTTAATTGCAGTTCACAGAAAGCTGCAAAAATTCGCAGCGCTGTCAGCTTCCGTTCTCTTCGCGGGAAGCAAAATGTCGAGCTCCGGTGACGAAACCCTAGCAGCGACACCACTAGCACCACCGCCAGCGGCAACCGAAGAAGAAGAAGCGGCGGCGGAACAGAGAGTTTCCGACACCGACAACGCCAGCGAGCAGTCCTCCCAGGAATGGGAGACCATGGCCCGAGCTTGGCTCTGCTCGTTTCCCGAGGCCAAGGCTGTCTCCATGGACGAGGTCGAAGCCTGGATCGACTCCAACTTCGATTTCATACCCCAAGGCATCAAATCCATGCCTCGGGCCGACCTCTGCCACCGCCTCATTGCCATTCAGAATTGCATGCGACTCCCCTGTCAGGAAGGAAAGGAAGAAAACCAAGGTGATGTAGATATTCCACATGCTCGATTTAAACGCACTGATCAATGGAGACCAGTTTACATTTGGTTAGAATCGTTGGATAAAGATGACGTGGTTAAGTCCAAAGATATAGCAGACTGGCTAACTGAGAACCCGGATATCCAAGCAGAGTTGTGCTCTAGGCATTCTAAGTATCATTTGATGCACTATATCAAGAAGTGCCATATGAAGATATTGAAGAGGCGGGAAAAGAAGAAGGTATTGGATACTTCTTGTTTTAGCCCAATTACCCTAGAAAATTCCAAGCGTCCGTCTGAAGATGCAGATGCTTCTTCCATATGGACCGCATCAGGTATCGTGCAGCCCGACACACCAGCCGCTCTAAAGGTTCACAAAGACGTGCAGATGAAACAAGAAGCTCCAGTGCCATCTCCACTATCTGTATGCAATGCGTTGATCAATGTACCTAAAGATAGTGATGCATATGCGATGAAACGAAAGGAAGCAATTCAGAAATACGAGATATTAGTGGAGCTGGAGAAGCTGCTTGCCCCCATCTTTTTAACGCGCGTAGATACGAATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

340

Amino Acids

38.41

Weight (kDa)

6.73

Isoelectric Point (pI)

60.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014166)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50410
fragaria_vesca FvH4_5g08300
malus_domestica MD06G1142100.v1.1 MD14G1157400.v1.1
prunus_persica Prupe.5G151300_v2.0.a1 Prupe.5G151300_v2.0.a1
pyrus_communis pycom06g13190
rosa_chinensis RchiOBHm_Chr7g0190221
rosa_laevigata RLG00000004552
rosa_multiflora Rmu_sc0004886.1_g000020
rosa_rugosa Rorug06G0503000 Rorug06G0503000
rosa_samantha Rh7AG108400 Rh7BG111000 Rh7CG113400 Rh7DG111800
rosa_wichuraiana Rw7G009400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 426
AatII GACGTC 1 cut(s) 22
AccBSI CCGCTC 1 cut(s) 812
AccII CGCG 3 cut(s) 101, 1000, 1002
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 2 cut(s) 68, 730
AcuI CTGAAG 1 cut(s) 768
AcyI GRCGYC 1 cut(s) 19
AfaI GTAC 1 cut(s) 897
AfeI AGCGCT 1 cut(s) 78
AfiI CCNNNNNNNGG 5 cut(s) 246, 247, 267, 372, 430
AgsI TTSAA 1 cut(s) 670
AjiI CACGTC 2 cut(s) 544, 832
AjnI CCWGG 2 cut(s) 240, 320
AjuI GAANNNNNNNTTGG 4 cut(s) 326, 358, 677, 709
AluBI AGCT 7 cut(s) 61, 86, 120, 266, 851, 967, 976
AluI AGCT 7 cut(s) 61, 86, 120, 266, 851, 967, 976
Alw21I GWGCWC 2 cut(s) 122, 611
Alw26I GTCTC 3 cut(s) 245, 304, 496
AlwI GGATC 1 cut(s) 332
Ama87I CYCGRG 3 cut(s) 261, 284, 372
Aor51HI AGCGCT 1 cut(s) 78
AoxI GGCC 3 cut(s) 258, 288, 375
ApeKI GCWGC 5 cut(s) 61, 74, 140, 793, 976
ApoI RAATTY 2 cut(s) 68, 730
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
Asp700I GAANNNNTTC 1 cut(s) 939
AspLEI GCGC 2 cut(s) 79, 1002
AspS9I GGNCC 3 cut(s) 259, 375, 774
AsuC2I CCSGG 1 cut(s) 587
AsuHPI GGTGA 2 cut(s) 137, 467
AvaI CYCGRG 3 cut(s) 261, 284, 372
AvaII GGWCC 1 cut(s) 774
BanII GRGCYC 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 122, 611
BbvI GCAGC 5 cut(s) 48, 86, 152, 805, 963
BccI CCATC 3 cut(s) 16, 868, 995
BciT130I CCWGG 2 cut(s) 242, 322
BciVI GTATCC 1 cut(s) 691
BclI TGATCA 2 cut(s) 493, 888
BcnI CCSGG 1 cut(s) 587
BcoDI GTCTC 3 cut(s) 245, 304, 496
BfaI CTAG 4 cut(s) 137, 152, 612, 725
BfoI RGCGCY 1 cut(s) 80
BfuI GTATCC 1 cut(s) 691
BisI GCNGC 9 cut(s) 62, 75, 141, 168, 189, 192, 794, 810, 977
BlsI GCNGC 9 cut(s) 63, 76, 142, 169, 190, 193, 795, 811, 978
Bme1390I CCNGG 3 cut(s) 242, 322, 587
Bme18I GGWCC 1 cut(s) 774
BmeT110I CYCGRG 3 cut(s) 261, 284, 372
BmgBI CACGTC 2 cut(s) 544, 832
BmgT120I GGNCC 3 cut(s) 259, 375, 774
BmrFI CCNGG 3 cut(s) 242, 322, 587
BmsI GCATC 6 cut(s) 366, 624, 742, 748, 788, 901
BplI GAGNNNNNCTC 6 cut(s) 221, 253, 255, 287, 593, 625
BpmI CTGGAG 2 cut(s) 837, 989
BpuMI CCSGG 1 cut(s) 587
BsaHI GRCGYC 1 cut(s) 19
BsaI GGTCTC 2 cut(s) 245, 496
BsaJI CCNNGG 8 cut(s) 240, 255, 285, 291, 303, 352, 371, 451
BsaWI WCCGGW 2 cut(s) 33, 122
Bsc4I CCNNNNNNNGG 5 cut(s) 246, 247, 267, 372, 430
Bse1I ACTGG 3 cut(s) 506, 575, 854
Bse3DI GCAATG 2 cut(s) 396, 886
BseBI CCWGG 2 cut(s) 242, 322
BseDI CCNNGG 8 cut(s) 240, 255, 285, 291, 303, 352, 371, 451
BseLI CCNNNNNNNGG 5 cut(s) 246, 247, 267, 372, 430
BseMI GCAATG 2 cut(s) 396, 886
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 3 cut(s) 506, 575, 854
BseXI GCAGC 5 cut(s) 48, 86, 152, 805, 963
BsgI GTGCAG 2 cut(s) 812, 854
Bsh1236I CGCG 3 cut(s) 101, 1000, 1002
BshFI GGCC 3 cut(s) 260, 290, 377
BsiHKAI GWGCWC 2 cut(s) 122, 611
BsiHKCI CYCGRG 3 cut(s) 261, 284, 372
BsiSI CCGG 3 cut(s) 34, 123, 587
BslI CCNNNNNNNGG 5 cut(s) 246, 247, 267, 372, 430
BsmAI GTCTC 3 cut(s) 245, 304, 496
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 3 cut(s) 260, 290, 377
Bso31I GGTCTC 2 cut(s) 245, 496
BsoBI CYCGRG 3 cut(s) 261, 284, 372
Bsp1286I GDGCHC 2 cut(s) 122, 611
Bsp143I GATC 3 cut(s) 324, 493, 888
Bsp19I CCATGG 2 cut(s) 255, 303
BspANI GGCC 3 cut(s) 260, 290, 377
BspCNI CTCAG 1 cut(s) 571
BspFNI CGCG 3 cut(s) 101, 1000, 1002
BspPI GGATC 1 cut(s) 332
BspTNI GGTCTC 2 cut(s) 245, 496
BsrBI CCGCTC 1 cut(s) 812
BsrDI GCAATG 2 cut(s) 396, 886
BsrI ACTGG 3 cut(s) 506, 575, 854
BssECI CCNNGG 8 cut(s) 240, 255, 285, 291, 303, 352, 371, 451
BssMI GATC 3 cut(s) 324, 493, 888
BssNI GRCGYC 1 cut(s) 19
BssT1I CCWWGG 5 cut(s) 255, 291, 303, 352, 451
Bst2UI CCWGG 2 cut(s) 242, 322
Bst6I CTCTTC 2 cut(s) 101, 665
BstACI GRCGYC 1 cut(s) 19
BstC8I GCNNGC 5 cut(s) 165, 226, 230, 416, 981
BstDEI CTNAG 2 cut(s) 579, 621
BstDSI CCRYGG 2 cut(s) 255, 303
BstFNI CGCG 3 cut(s) 101, 1000, 1002
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 2 cut(s) 79, 1002
BstKTI GATC 3 cut(s) 327, 496, 891
BstMAI GTCTC 3 cut(s) 245, 304, 496
BstMBI GATC 3 cut(s) 324, 493, 888
BstMWI GCNNNNNNNGC 2 cut(s) 83, 973
BstNI CCWGG 2 cut(s) 242, 322
BstNSI RCATGY 2 cut(s) 418, 476
BstSCI CCNGG 3 cut(s) 240, 320, 585
BstUI CGCG 3 cut(s) 101, 1000, 1002
BstV1I GCAGC 5 cut(s) 48, 86, 152, 805, 963
BsuI GTATCC 1 cut(s) 691
BsuRI GGCC 3 cut(s) 260, 290, 377
BtgI CCRYGG 2 cut(s) 255, 303
BtgZI GCGATG 1 cut(s) 935
BtrI CACGTC 2 cut(s) 544, 832
BtsIMutI CAGTG 2 cut(s) 489, 861
Cac8I GCNNGC 5 cut(s) 165, 226, 230, 416, 981
CfoI GCGC 2 cut(s) 79, 1002
Cfr13I GGNCC 3 cut(s) 259, 375, 774
CseI GACGC 1 cut(s) 728
Csp6I GTAC 1 cut(s) 896
CviAII CATG 5 cut(s) 256, 304, 367, 415, 473
CviQI GTAC 1 cut(s) 896
DdeI CTNAG 2 cut(s) 579, 621
DpnI GATC 3 cut(s) 326, 495, 890
DpnII GATC 3 cut(s) 324, 493, 888
DraI TTTAAA 1 cut(s) 484
DrdI GACNNNNNNGTC 1 cut(s) 426
DseDI GACNNNNNNGTC 1 cut(s) 426
Eam1104I CTCTTC 2 cut(s) 101, 665
EarI CTCTTC 2 cut(s) 101, 665
EciI GGCGGA 2 cut(s) 17, 209
Ecl136II GAGCTC 1 cut(s) 120
Eco130I CCWWGG 5 cut(s) 255, 291, 303, 352, 451
Eco24I GRGCYC 1 cut(s) 122
Eco31I GGTCTC 2 cut(s) 245, 496
Eco32I GATATC 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 774
Eco47III AGCGCT 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 768
Eco88I CYCGRG 3 cut(s) 261, 284, 372
EcoICRI GAGCTC 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 240, 320
EcoRV GATATC 1 cut(s) 592
EcoT14I CCWWGG 5 cut(s) 255, 291, 303, 352, 451
EcoT22I ATGCAT 1 cut(s) 916
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 5 cut(s) 255, 291, 303, 352, 451
FaeI CATG 5 cut(s) 259, 307, 370, 418, 476
FatI CATG 5 cut(s) 255, 303, 366, 414, 472
FauI CCCGC 2 cut(s) 94, 669
FauNDI CATATG 3 cut(s) 657, 770, 916
FbaI TGATCA 2 cut(s) 493, 888
Fnu4HI GCNGC 9 cut(s) 62, 75, 141, 168, 189, 192, 794, 810, 977
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 9 cut(s) 62, 75, 141, 168, 189, 192, 794, 810, 977
FspBI CTAG 4 cut(s) 137, 152, 612, 725
GlaI GCGC 2 cut(s) 78, 1001
GluI GCNGC 9 cut(s) 62, 75, 141, 168, 189, 192, 794, 810, 977
GsuI CTGGAG 2 cut(s) 837, 989
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 3 cut(s) 260, 290, 377
HapII CCGG 3 cut(s) 34, 123, 587
HgaI GACGC 1 cut(s) 728
HhaI GCGC 2 cut(s) 79, 1002
Hin1I GRCGYC 1 cut(s) 19
Hin1II CATG 5 cut(s) 259, 307, 370, 418, 476
Hin6I GCGC 2 cut(s) 77, 1000
HinP1I GCGC 2 cut(s) 77, 1000
HinfI GANTC 3 cut(s) 329, 420, 524
HpaII CCGG 3 cut(s) 34, 123, 587
HphI GGTGA 2 cut(s) 137, 467
Hpy166II GTNNAC 3 cut(s) 52, 511, 823
Hpy188I TCNGA 4 cut(s) 211, 408, 748, 945
Hpy188III TCNNGA 3 cut(s) 284, 431, 646
Hpy8I GTNNAC 3 cut(s) 52, 511, 823
Hpy99I CGWCG 2 cut(s) 21, 24
HpyAV CCTTC 2 cut(s) 428, 682
HpyCH4IV ACGT 3 cut(s) 19, 543, 831
HpyCH4V TGCA 9 cut(s) 47, 64, 414, 637, 755, 793, 835, 879, 914
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 973
HpyF3I CTNAG 2 cut(s) 579, 621
HpySE526I ACGT 3 cut(s) 19, 543, 831
Hsp92I GRCGYC 1 cut(s) 19
Hsp92II CATG 5 cut(s) 259, 307, 370, 418, 476
HspAI GCGC 2 cut(s) 77, 1000
Ksp22I TGATCA 2 cut(s) 493, 888
Kzo9I GATC 3 cut(s) 324, 493, 888
LmnI GCTCC 3 cut(s) 125, 856, 964
Lsp1109I GCAGC 5 cut(s) 48, 86, 152, 805, 963
LweI GCATC 6 cut(s) 366, 624, 742, 748, 788, 901
MaeI CTAG 4 cut(s) 137, 152, 612, 725
MaeII ACGT 3 cut(s) 19, 543, 831
MaeIII GTNAC 2 cut(s) 3, 125
MalI GATC 3 cut(s) 326, 495, 890
MbiI CCGCTC 1 cut(s) 812
MboI GATC 3 cut(s) 324, 493, 888
MhlI GDGCHC 2 cut(s) 122, 611
MluCI AATT 6 cut(s) 42, 68, 409, 717, 730, 939
MlyI GAGTC 2 cut(s) 323, 414
MmeI TCCRAC 3 cut(s) 234, 357, 510
MnlI CCTC 8 cut(s) 41, 247, 280, 304, 381, 392, 404, 666
Mph1103I ATGCAT 1 cut(s) 916
MroXI GAANNNNTTC 1 cut(s) 939
MseI TTAA 4 cut(s) 41, 483, 549, 995
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 3 cut(s) 34, 123, 587
MspR9I CCNGG 3 cut(s) 242, 322, 587
Mva1269I GAATGC 1 cut(s) 616
MvaI CCWGG 2 cut(s) 242, 322
MvnI CGCG 3 cut(s) 101, 1000, 1002
MwoI GCNNNNNNNGC 2 cut(s) 83, 973
NciI CCSGG 1 cut(s) 587
NcoI CCATGG 2 cut(s) 255, 303
NdeI CATATG 3 cut(s) 657, 770, 916
NdeII GATC 3 cut(s) 324, 493, 888
NlaIII CATG 5 cut(s) 259, 307, 370, 418, 476
NmuCI GTSAC 2 cut(s) 3, 125
NsiI ATGCAT 1 cut(s) 916
NspI RCATGY 2 cut(s) 418, 476
PaeI GCATGC 1 cut(s) 418
PcsI WCGNNNNNNNCGW 1 cut(s) 795
PctI GAATGC 1 cut(s) 616
PdmI GAANNNNTTC 1 cut(s) 939
PfeI GAWTC 1 cut(s) 524
PflFI GACNNNGTC 1 cut(s) 311
PkrI GCNGC 9 cut(s) 63, 76, 142, 169, 190, 193, 795, 811, 978
PleI GAGTC 2 cut(s) 323, 414
PpsI GAGTC 2 cut(s) 323, 414
Psp124BI GAGCTC 1 cut(s) 122
Psp6I CCWGG 2 cut(s) 240, 320
PspGI CCWGG 2 cut(s) 240, 320
PspPI GGNCC 3 cut(s) 259, 375, 774
PsyI GACNNNGTC 1 cut(s) 311
RsaI GTAC 1 cut(s) 897
RsaNI GTAC 1 cut(s) 896
SacI GAGCTC 1 cut(s) 122
SaqAI TTAA 4 cut(s) 41, 483, 549, 995
SatI GCNGC 9 cut(s) 62, 75, 141, 168, 189, 192, 794, 810, 977
Sau3AI GATC 3 cut(s) 324, 493, 888
Sau96I GGNCC 3 cut(s) 259, 375, 774
SchI GAGTC 2 cut(s) 323, 414
ScrFI CCNGG 3 cut(s) 242, 322, 587
SduI GDGCHC 2 cut(s) 122, 611
SfaNI GCATC 6 cut(s) 366, 624, 742, 748, 788, 901
SinI GGWCC 1 cut(s) 774
SphI GCATGC 1 cut(s) 418
Sse9I AATT 6 cut(s) 42, 68, 409, 717, 730, 939
SspMI CTAG 4 cut(s) 137, 152, 612, 725
SstI GAGCTC 1 cut(s) 122
StyD4I CCNGG 3 cut(s) 240, 320, 585
StyI CCWWGG 5 cut(s) 255, 291, 303, 352, 451
TaiI ACGT 3 cut(s) 22, 546, 834
TaqI TCGA 5 cut(s) 116, 315, 327, 339, 478
TasI AATT 6 cut(s) 42, 68, 409, 717, 730, 939
TauI GCSGC 4 cut(s) 170, 191, 194, 812
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 4 cut(s) 41, 483, 549, 995
Tru9I TTAA 4 cut(s) 41, 483, 549, 995
TscAI CASTG 2 cut(s) 496, 861
TseFI GTSAC 2 cut(s) 3, 125
TseI GCWGC 5 cut(s) 61, 74, 140, 793, 976
Tsp45I GTSAC 2 cut(s) 3, 125
TspDTI ATGAA 4 cut(s) 334, 674, 854, 938
TspGWI ACGGA 2 cut(s) 79, 732
TspRI CASTG 2 cut(s) 496, 861
Tth111I GACNNNGTC 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 774
XapI RAATTY 2 cut(s) 68, 730
XceI RCATGY 2 cut(s) 418, 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 513
XmnI GAANNNNTTC 1 cut(s) 939
XspI CTAG 4 cut(s) 137, 152, 612, 725
ZraI GACGTC 1 cut(s) 20
Zsp2I ATGCAT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.